mRNA_H-elongata_contig180310.4797.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig180310.4797.1
Unique NamemRNA_H-elongata_contig180310.4797.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: D8LB06_ECTSI (WD repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB06_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 2.740e-26
Identity = 47/50 (94.00%), Postives = 49/50 (98.00%), Query Frame = 1 
Query:   31 KQVWNTATGDELLTLDGHRNVVYAIAFNNPWGNKIITGSFDKTCKLWNAE 180
            +QVWNT TGDELLTLDGHRNVVYAIAFNNPWG+KIITGSFDKTCKLWNAE
Sbjct:  125 EQVWNTTTGDELLTLDGHRNVVYAIAFNNPWGDKIITGSFDKTCKLWNAE 174
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BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: A0A812TQF9_SYMMI (DAW1 protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TQF9_SYMMI)

HSP 1 Score: 96.7 bits (239), Expect = 8.730e-23
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:   40 WNTATGDELLTLDGHRNVVYAIAFNNPWGNKIITGSFDKTCKLWNAE 180
            WNT TGDELLTL+GHRNVVYAIAFNNP+G+KIITGSFDKTCKLW+AE
Sbjct:    1 WNTITGDELLTLEGHRNVVYAIAFNNPYGDKIITGSFDKTCKLWSAE 47
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BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: Q9D4T2_MOUSE (Uncharacterized protein n=1 Tax=Mus musculus TaxID=10090 RepID=Q9D4T2_MOUSE)

HSP 1 Score: 87.8 bits (216), Expect = 2.160e-19
Identity = 37/47 (78.72%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:   40 WNTATGDELLTLDGHRNVVYAIAFNNPWGNKIITGSFDKTCKLWNAE 180
            W+TA+G+EL TL+GH+NVVYAIAFNNP+G+KI TGSFDKTCKLW+AE
Sbjct:    8 WDTASGEELHTLEGHKNVVYAIAFNNPYGDKIATGSFDKTCKLWSAE 54
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BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: A0A669DGY0_ORENI (Uncharacterized protein n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A669DGY0_ORENI)

HSP 1 Score: 85.9 bits (211), Expect = 1.180e-18
Identity = 38/48 (79.17%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:   37 VWNTATGDELLTLDGHRNVVYAIAFNNPWGNKIITGSFDKTCKLWNAE 180
            VW+TA+G EL  L+GHRNVVYAIAFNNP+G+KI TGSFDKTCKLW AE
Sbjct:    9 VWDTASGTELHVLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWCAE 56
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BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: A0A2K6F3V9_PROCO (Dynein assembly factor with WD repeats 1 n=1 Tax=Propithecus coquereli TaxID=379532 RepID=A0A2K6F3V9_PROCO)

HSP 1 Score: 85.9 bits (211), Expect = 1.310e-18
Identity = 36/47 (76.60%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:   37 VWNTATGDELLTLDGHRNVVYAIAFNNPWGNKIITGSFDKTCKLWNA 177
            +W+TA+G+EL TL+GHRNVVYAIAFNNP+G+KI TGSFDKTCKLW+ 
Sbjct:    5 LWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSV 51
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BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: A0A812AXW2_SEPPH (DAW1 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812AXW2_SEPPH)

HSP 1 Score: 81.3 bits (199), Expect = 5.800e-17
Identity = 35/48 (72.92%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:   37 VWNTATGDELLTLDGHRNVVYAIAFNNPWGNKIITGSFDKTCKLWNAE 180
            +WNTA+G+EL T +GH NVVYAIAFNNP+G+KI TGSFDKT KLW+A+
Sbjct:    1 MWNTASGEELHTFNGHTNVVYAIAFNNPFGDKIATGSFDKTYKLWSAD 48
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BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: A0A8C6LUL5_NOTFU (Dynein assembly factor with WD repeats 1 n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6LUL5_NOTFU)

HSP 1 Score: 80.9 bits (198), Expect = 8.640e-17
Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:   40 WNTATGDELLTLDGHRNVVYAIAFNNPWGNKIITGSFDKTCKLWNAE 180
            W+TA+G EL  L+GHRNVVYA+ FNNP+G+KI TGSFDKTC+LW AE
Sbjct:    8 WDTASGKELHILEGHRNVVYAVTFNNPYGDKIATGSFDKTCRLWCAE 54
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BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: A0A672R9L4_SINGR (Uncharacterized protein n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672R9L4_SINGR)

HSP 1 Score: 80.5 bits (197), Expect = 1.410e-16
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:   22 NRLKQVWNTATGDELLTLDGHRNVVYAIAFNNPWGN--------------KIITGSFDKTCKLWNAE 180
            +R  ++W+TA+G+EL TL+GHRNVVYAIAFNNP+G               K+ TGSFDKTCKLW+AE
Sbjct:  113 DRTCKIWDTASGEELHTLEGHRNVVYAIAFNNPYGMAYPSSFPCFFGNWYKVATGSFDKTCKLWSAE 179
[Close]
BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: A0A672R8A6_SINGR (Uncharacterized protein n=1 Tax=Sinocyclocheilus grahami TaxID=75366 RepID=A0A672R8A6_SINGR)

HSP 1 Score: 80.5 bits (197), Expect = 1.900e-16
Identity = 38/67 (56.72%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:   22 NRLKQVWNTATGDELLTLDGHRNVVYAIAFNNPWGN--------------KIITGSFDKTCKLWNAE 180
            +R  ++W+TA+G+EL TL+GHRNVVYAIAFNNP+G               K+ TGSFDKTCKLW+AE
Sbjct:  104 DRTCKIWDTASGEELHTLEGHRNVVYAIAFNNPYGMAYPSSFPCFFGNWYKVATGSFDKTCKLWSAE 170
[Close]
BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Match: A0A674JMV1_TERCA (Dynein assembly factor with WD repeats 1 n=3 Tax=Testudines TaxID=8459 RepID=A0A674JMV1_TERCA)

HSP 1 Score: 75.5 bits (184), Expect = 9.890e-15
Identity = 32/42 (76.19%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:   34 QVWNTATGDELLTLDGHRNVVYAIAFNNPWGNKIITGSFDKT 159
            ++W+TA+G+EL TL+GHRNVVYAIAFNNP+G+KI TGSFDKT
Sbjct:    6 KIWDTASGEELRTLEGHRNVVYAIAFNNPYGDKIATGSFDKT 47
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig180310.4797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LB06_ECTSI2.740e-2694.00WD repeat protein n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A812TQF9_SYMMI8.730e-2389.36DAW1 protein (Fragment) n=1 Tax=Symbiodinium micro... [more]
Q9D4T2_MOUSE2.160e-1978.72Uncharacterized protein n=1 Tax=Mus musculus TaxID... [more]
A0A669DGY0_ORENI1.180e-1879.17Uncharacterized protein n=4 Tax=Percomorphaceae Ta... [more]
A0A2K6F3V9_PROCO1.310e-1876.60Dynein assembly factor with WD repeats 1 n=1 Tax=P... [more]
A0A812AXW2_SEPPH5.800e-1772.92DAW1 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0... [more]
A0A8C6LUL5_NOTFU8.640e-1772.34Dynein assembly factor with WD repeats 1 n=1 Tax=N... [more]
A0A672R9L4_SINGR1.410e-1656.72Uncharacterized protein n=1 Tax=Sinocyclocheilus g... [more]
A0A672R8A6_SINGR1.900e-1656.72Uncharacterized protein n=1 Tax=Sinocyclocheilus g... [more]
A0A674JMV1_TERCA9.890e-1576.19Dynein assembly factor with WD repeats 1 n=3 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig180310contigH-elongata_contig180310:990..1169 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue1.3e-21
Seed eggNOG ortholog2880.D8LB06
Preferred nameDAW1
KEGG koko:K12662,ko:K19760
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
GOsGO:0000226,GO:0000375,GO:0000377,GO:0000398,GO:0001539,GO:0001578,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007275,GO:0007368,GO:0007389,GO:0008150,GO:0008152,GO:0008380,GO:0009799,GO:0009855,GO:0009987,GO:0010467,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0017069,GO:0017070,GO:0022607,GO:0030030,GO:0030031,GO:0030532,GO:0030621,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034622,GO:0034641,GO:0035082,GO:0040011,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044782,GO:0046483,GO:0046540,GO:0048856,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0065003,GO:0070013,GO:0070286,GO:0070925,GO:0071001,GO:0071005,GO:0071011,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120031,GO:0120036,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.U4 snRNA binding
EggNOG OGsKOG0272@1,KOG0272@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041,ko04812
Hectar predicted targeting categoryother localisation
Exons1
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930040.5138667-CDS-H-elongata_contig180310:989..11691622930040.5138667-CDS-H-elongata_contig180310:989..1169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180310 990..1169 +
1691679257.6629417-CDS-H-elongata_contig180310:989..11691691679257.6629417-CDS-H-elongata_contig180310:989..1169Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig180310 990..1169 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig180310.4797.1prot_H-elongata_contig180310.4797.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig180310 990..1169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig180310.4797.1

>prot_H-elongata_contig180310.4797.1 ID=prot_H-elongata_contig180310.4797.1|Name=mRNA_H-elongata_contig180310.4797.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
HAIHPPSNRLKQVWNTATGDELLTLDGHRNVVYAIAFNNPWGNKIITGSF
DKTCKLWNAE
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mRNA from alignment at H-elongata_contig180310:990..1169+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig180310.4797.1 ID=mRNA_H-elongata_contig180310.4797.1|Name=mRNA_H-elongata_contig180310.4797.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=180bp|location=Sequence derived from alignment at H-elongata_contig180310:990..1169+ (Himanthalia elongata Himel1 dioecious)
CACGCGATCCACCCTCCCTCCAACCGCCTGAAACAGGTTTGGAACACCGC
CACGGGGGATGAGTTGCTAACTCTCGATGGGCACCGCAACGTCGTGTATG
CGATCGCGTTCAACAACCCTTGGGGAAACAAGATCATCACCGGATCTTTC
GACAAGACCTGCAAGCTTTGGAACGCCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig180310:990..1169+

>mRNA_H-elongata_contig180310.4797.1 ID=mRNA_H-elongata_contig180310.4797.1|Name=mRNA_H-elongata_contig180310.4797.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig180310:990..1169+ (Himanthalia elongata Himel1 dioecious)
CACGCGATCCACCCTCCCTCCAACCGCCTGAAACAGGTTTGGAACACCGC
CACGGGGGATGAGTTGCTAACTCTCGATGGGCACCGCAACGTCGTGTATG
CGATCGCGTTCAACAACCCTTGGGGAAACAAGATCATCACCGGATCTTTC
GACAAGACCTGCAAGCTTTGGAACGCCGAGCACGCGATCCACCCTCCCTC
CAACCGCCTGAAACAGGTTTGGAACACCGCCACGGGGGATGAGTTGCTAA
CTCTCGATGGGCACCGCAACGTCGTGTATGCGATCGCGTTCAACAACCCT
TGGGGAAACAAGATCATCACCGGATCTTTCGACAAGACCTGCAAGCTTTG
GAACGCCGAG
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