mRNA_H-elongata_contig18011.4789.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig18011.4789.1
Unique NamemRNA_H-elongata_contig18011.4789.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig18011.4789.1 vs. uniprot
Match: D7G6P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P9_ECTSI)

HSP 1 Score: 296 bits (759), Expect = 1.900e-97
Identity = 165/254 (64.96%), Postives = 179/254 (70.47%), Query Frame = 1 
Query:    1 QSTKFSDFAKLEHLEEFSGLLNKGHSHIGSEHTVISVCAPGQRPHHAIPDAAFPRCKARNPDQQKLVFETVRHFTIVSLVEVPKKLCLQFIRLMITRKVEASRGLKLSPCPPPPPSTP*YLCFTKNQCRSRTLTKTLGVWNDRFADGTGPIMLVASDKDGVRCQLLKDFTSSVTSEMFAEFDLLDATTSMHGVAQCFDLK----RLCTRNIFKRGVKILAGSLPLNCDSFPQLFRWYD*KPKKTERTLLNPDDR 750
            +STKF     L++LE+ SG LN+GHSHIGSEHTVIS CA G  PHHAIP  AF  CKARNP QQ+LVFETVRH  IVSLVEVP KLCLQ I LMITRKVEASRG+                               L VWNDRFA    PI+LVASD DGVR +LL +FTSSVTSE FAEFDLLDA TS +GV QCFDLK    RL TR+I KRGVKI A +LPLNCDSFPQLFRWYD KP +T RTLLNPDDR
Sbjct:  101 KSTKFD----LDNLEDLSGRLNEGHSHIGSEHTVISACALGDTPHHAIPVVAFASCKARNPGQQQLVFETVRHCIIVSLVEVPGKLCLQLIWLMITRKVEASRGI-------------------------------LEVWNDRFAPTIDPIVLVASDGDGVRRRLLYNFTSSVTSEKFAEFDLLDAMTSEYGVVQCFDLKHNLKRLRTRDISKRGVKISASALPLNCDSFPQLFRWYDCKPNETYRTLLNPDDR 319
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BLAST of mRNA_H-elongata_contig18011.4789.1 vs. uniprot
Match: D7G0J3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J3_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 7.040e-54
Identity = 111/239 (46.44%), Postives = 127/239 (53.14%), Query Frame = 1 
Query:   40 LEEFSGLLNKGHSHIGSEHTVISVCAPGQRPHHAIPDAAFPRCKARNPDQQKLVFETVRHFTIVSLVEVPKKLCLQFIRLMITRKVEASRGLKLSPCPPPPPSTP*YLCFTKNQCRSRTLTKTLGVWNDRFADGTGPIMLVASDKDGVRCQLLKDFTSSVTSEMFAEFDLLDATTSMHGVAQCFDLK----RLCTRNIFKRGVKILAGSLPLNCDSFPQLFRWYD*KPKKTERTLLNPD 744
            L+ F     +G   +G+      +    +  HHAIP  A   CKARNP QQ++VFET+                                                                 LGVWNDRFA   GPI+LVASD DGVR +LL +FTSSVTSE FAEFDLLDATTS HGV QCFDLK    RL TR+I KRGVKI AG+LPL CDSFPQLF+WYD KP +T RTLLNPD
Sbjct:   49 LKTFPAGSTRGTRTVGANTPSSPLALFEKNSHHAIPVVASASCKARNPGQQQVVFETI-----------------------------------------------------------------LGVWNDRFAPTIGPIVLVASDGDGVRRRLLYNFTSSVTSEKFAEFDLLDATTSEHGVVQCFDLKHNLKRLRTRDISKRGVKIPAGALPLYCDSFPQLFQWYDCKPNETYRTLLNPD 222
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BLAST of mRNA_H-elongata_contig18011.4789.1 vs. uniprot
Match: D7FQM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM1_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 9.340e-24
Identity = 60/136 (44.12%), Postives = 84/136 (61.76%), Query Frame = 1 
Query:  361 LCFTKNQCRSRTLTKT-LGVWNDR--FADGTGPIMLVASDKDGVRCQLLKDFTSSVTSEMFAEFDLLDATTSMHGVAQCFDLK----RLCTRNIFKRGVKILAGSLPLNCDSFPQLFRWYD*KPKKTERTLLNPDD 747
            +C   N  + +   +T L VWN    F +  GPI+LV SD D VR ++L D TS  TS++   F L+D TTS+ G+ QCFDLK    R  T++I K+GV++ +G L LN D++P+LFR +D  P+ T   L NPDD
Sbjct:  152 VCNEPNPLQQQLALRTILDVWNSNPAFGNTLGPIVLVCSDGDAVRRKVLHDLTSGGTSDVLNVFKLMDKTTSVEGLMQCFDLKHCAKRYRTKDISKKGVRV-SGGLALNRDTYPELFRVHDGNPEATYDALFNPDD 286
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig18011.4789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G6P9_ECTSI1.900e-9764.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0J3_ECTSI7.040e-5446.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FQM1_ECTSI9.340e-2444.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig18011contigH-elongata_contig18011:6565..7314 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_005090.1
Exons1
Model size750
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig18011.4789.1prot_H-elongata_contig18011.4789.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig18011 6610..6861 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930038.6398478-UTR-H-elongata_contig18011:6564..66091622930038.6398478-UTR-H-elongata_contig18011:6564..6609Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18011 6565..6609 -
1691679257.0954928-UTR-H-elongata_contig18011:6564..66091691679257.0954928-UTR-H-elongata_contig18011:6564..6609Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18011 6565..6609 -
1622930038.681546-UTR-H-elongata_contig18011:6861..73141622930038.681546-UTR-H-elongata_contig18011:6861..7314Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18011 6862..7314 -
1691679257.1112442-UTR-H-elongata_contig18011:6861..73141691679257.1112442-UTR-H-elongata_contig18011:6861..7314Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig18011 6862..7314 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930038.6585114-CDS-H-elongata_contig18011:6609..68611622930038.6585114-CDS-H-elongata_contig18011:6609..6861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18011 6610..6861 -
1691679257.1034288-CDS-H-elongata_contig18011:6609..68611691679257.1034288-CDS-H-elongata_contig18011:6609..6861Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig18011 6610..6861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig18011.4789.1

>prot_H-elongata_contig18011.4789.1 ID=prot_H-elongata_contig18011.4789.1|Name=mRNA_H-elongata_contig18011.4789.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MLVASDKDGVRCQLLKDFTSSVTSEMFAEFDLLDATTSMHGVAQCFDLKR
LCTRNIFKRGVKILAGSLPLNCDSFPQLFRWYD*
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mRNA from alignment at H-elongata_contig18011:6565..7314-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig18011.4789.1 ID=mRNA_H-elongata_contig18011.4789.1|Name=mRNA_H-elongata_contig18011.4789.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=750bp|location=Sequence derived from alignment at H-elongata_contig18011:6565..7314- (Himanthalia elongata Himel1 dioecious)
CAGAGTACAAAGTTCAGCGACTTTGCGAAACTTGAGCACCTTGAAGAATT
TTCCGGCCTACTCAACAAGGGTCACTCCCACATTGGGAGCGAACACACCG
TCATCTCCGTTTGCGCTCCTGGACAACGTCCGCACCACGCCATACCAGAC
GCGGCGTTCCCCCGCTGTAAGGCGCGTAACCCAGACCAGCAGAAACTCGT
GTTCGAAACGGTAAGACACTTTACCATTGTCTCCCTTGTGGAGGTACCTA
AGAAACTGTGCCTCCAGTTTATAAGGTTGATGATAACGCGAAAGGTTGAG
GCAAGCCGAGGATTGAAGCTCTCTCCATGCCCCCCTCCACCCCCTTCTAC
TCCATGATATCTGTGTTTTACCAAAAACCAATGCCGGTCTCGCACATTGA
CGAAAACACTGGGTGTGTGGAACGATCGATTCGCTGACGGCACAGGCCCC
ATCATGCTCGTGGCTTCGGATAAGGACGGCGTGAGGTGCCAGTTGCTCAA
AGACTTCACCAGCAGTGTCACGTCCGAGATGTTCGCTGAGTTCGACCTCC
TTGACGCCACGACTAGTATGCACGGCGTGGCACAGTGCTTTGATCTGAAA
CGGCTTTGCACGAGGAACATTTTTAAGAGAGGGGTGAAGATATTAGCGGG
TTCACTTCCGCTTAACTGCGACAGTTTTCCACAGCTATTTCGTTGGTACG
ACTGAAAACCGAAAAAGACAGAGAGGACCTTGCTCAACCCGGACGACAGG
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Coding sequence (CDS) from alignment at H-elongata_contig18011:6565..7314-

>mRNA_H-elongata_contig18011.4789.1 ID=mRNA_H-elongata_contig18011.4789.1|Name=mRNA_H-elongata_contig18011.4789.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig18011:6565..7314- (Himanthalia elongata Himel1 dioecious)
ATGCTCGTGGCTTCGGATAAGGACGGCGTGAGGTGCCAGTTGCTCAAAGA
CTTCACCAGCAGTGTCACGTCCGAGATGTTCGCTGAGTTCGACCTCCTTG
ACGCCACGACTAGTATGCACGGCGTGGCACAGTGCTTTGATCTGAAACGG
CTTTGCACGAGGAACATTTTTAAGAGAGGGGTGAAGATATTAGCGGGTTC
ACTTCCGCTTAACTGCGACAGTTTTCCACAGCTATTTCGTTGGTACGACT
GAATGCTCGTGGCTTCGGATAAGGACGGCGTGAGGTGCCAGTTGCTCAAA
GACTTCACCAGCAGTGTCACGTCCGAGATGTTCGCTGAGTTCGACCTCCT
TGACGCCACGACTAGTATGCACGGCGTGGCACAGTGCTTTGATCTGAAAC
GGCTTTGCACGAGGAACATTTTTAAGAGAGGGGTGAAGATATTAGCGGGT
TCACTTCCGCTTAACTGCGACAGTTTTCCACAGCTATTTCGTTGGTACGA
CTGA
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