mRNA_H-elongata_contig17991.4783.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: D7G3Y7_ECTSI (Bardet-Biedl syndrome 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Y7_ECTSI) HSP 1 Score: 286 bits (733), Expect = 8.720e-91 Identity = 145/201 (72.14%), Postives = 170/201 (84.58%), Query Frame = 1
Query: 10 GSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSELMD 612
G + +LNR A L K K G PPEQDIPLK+PKKTKLYVEQTQR KLQA EIH A+QKDLC LRLTAARAYVK ITDG+ GVSA+G +ASLRL+A+CQGLGP FKI+LELQNQG+ LTNLPVAF+YDR+IY ME+GQ ++SAL+PGV+S+H+I IT+IDEGGA+G VRI+VLSPSGP+PLVSAVV MPLSEL+D
Sbjct: 401 GKLTIFMLNRKADLRKPKTFGAATAGYPPEQDIPLKVPKKTKLYVEQTQRAKLQAGEIHRAFQKDLCLLRLTAARAYVKTITDGRQGVSAVGAAASLRLHAQCQGLGPNFKIKLELQNQGDRALTNLPVAFTYDRDIYAMEKGQFMVSALIPGVSSRHEIAITNIDEGGAAGSVRILVLSPSGPSPLVSAVVNMPLSELID 601
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: A0A2P4WVL1_9STRA (Bardet-Biedl syndrome 1 family protein (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WVL1_9STRA) HSP 1 Score: 176 bits (447), Expect = 3.000e-52 Identity = 99/200 (49.50%), Postives = 138/200 (69.00%), Query Frame = 1
Query: 4 RAGSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSE 603
++G+ ++ IL R+A L + SE A G PPEQDIPL IPKKT LYVEQTQRE+ A E+H +Q+DLC+LRLT ARAYVK+I DG+ VS A++RLNA+ QG+GP F+I+L +QN G +T++ +AF YD ++Y +++ ++I ++P V Q+ + + SI E GA+ V I V PLVSAVV+MPLSE
Sbjct: 30 KSGALSLKILKRTASLEAI---SEAA-GPPPEQDIPLNIPKKTTLYVEQTQRERDHATEMHRHFQRDLCKLRLTTARAYVKIIKDGQGPVS-YSTGAAIRLNAQVQGIGPFFRIKLNVQNAGTKAVTDITIAFHYDHDLYRVQQSLLLIPLVIPNVQYQYAVDVESISELGAADNVSIFVCGKESCVPLVSAVVSMPLSE 224
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: A0A067C4C7_SAPPC (BBS1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C4C7_SAPPC) HSP 1 Score: 181 bits (458), Expect = 2.460e-50 Identity = 101/202 (50.00%), Postives = 133/202 (65.84%), Query Frame = 1
Query: 1 HRAGSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSEL 606
H++G+ + IL R+A L +S G PPEQDIPL +PKKTKLYVEQTQRE+ A E+H +Q+DLC+LRLT R+YVKVI DG+ VS AS+RLNA+ QGLGP FKIQL+LQN G + ++P+A YD +Y + + + I LLPGV + I + SID GA+ + I V P+VSAVV MPLS++
Sbjct: 385 HKSGALTLKILQRNADLEGTSTSS----GPPPEQDIPLNVPKKTKLYVEQTQRERDHAIEMHRHFQRDLCKLRLTTVRSYVKVIRDGQGPVS-FATGASIRLNAKVQGLGPHFKIQLQLQNSGAKFVADIPIALHYDHGLYRIPQSLLQIPLLLPGVQYAYAIDVESIDATGAADSIYIFVCGKDSCVPIVSAVVNMPLSDV 581
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: A0A7S3EZY8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EZY8_9EUKA) HSP 1 Score: 171 bits (434), Expect = 1.900e-49 Identity = 90/199 (45.23%), Postives = 131/199 (65.83%), Query Frame = 1
Query: 7 AGSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSE 603
+G+ + +L R A L S + G PPEQD+PL IPKKTKLYVEQTQRE+ QA E+H +Q+DLC+LRL+ ARAYVK+ITDG+ G + +++RL A+ QGLGP+FK++LELQN G T+T + V SY+ +Y +++ I L+PG+ + + +DE G + +++ V S P +SA+V MP+SE
Sbjct: 96 SGALTIKMLQRLADLEN----SSHSPGPPPEQDVPLSIPKKTKLYVEQTQREREQATEMHRVFQRDLCKLRLSTARAYVKIITDGQ-GPMSYSAGSAMRLTAQVQGLGPRFKVKLELQNNGSRTVTGMAVTISYNSMLYRLKQCVFAIPVLVPGLTHRLDAAVECVDERGGTDAIKVFVCSAKSALPALSAIVNMPVSE 289
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: A0A1V9ZTA5_9STRA (Bardet-Biedl syndrome 1 family protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTA5_9STRA) HSP 1 Score: 177 bits (448), Expect = 8.900e-49 Identity = 97/203 (47.78%), Postives = 133/203 (65.52%), Query Frame = 1
Query: 1 HRAGSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSELM 609
H++G+ + IL R+A L + A+G PPEQDIPL +PKKTKLYVEQTQRE+ A E+H +Q+DLC+LRLT R+YVKVI DG+ VS AS+RLNA+ QG+GP FK+QL+LQN G ++P+ YD +Y + + + I LLPGV + I + +I + GA+ + I V PLVSAVV MPLS+++
Sbjct: 403 HKSGALTLKILQRNADLEG----TSTASGPPPEQDIPLNVPKKTKLYVEQTQRERDHAVEMHRHFQRDLCKLRLTTVRSYVKVIRDGQGPVS-YATGASIRLNAKVQGIGPLFKVQLQLQNSGAKFAADVPIVLHYDHGLYRIRQSLLQIPLLLPGVQYAYTIDVENISDTGAADSIYIFVCGKDSCVPLVSAVVNMPLSDIV 600
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: A0A7S2GD99_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GD99_9STRA) HSP 1 Score: 166 bits (421), Expect = 9.960e-49 Identity = 87/196 (44.39%), Postives = 129/196 (65.82%), Query Frame = 1
Query: 28 ILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSELMDC 615
+L RSA L +K G P EQD+ + IPKKT+LY++QT+REK QA E+H +Q DLC+LRL R+YVK+ITDG+ G+S +G S+RLN + QGLGPKFK+ +E+QN G ++N+P+ ++++++Y ER + LLPG+ + + I+ A +R+IVL+P PL+SA+V MP SE +C
Sbjct: 6 MLQRSANLGTMKCEQ----GPPKEQDMKIPIPKKTQLYLDQTEREKKQAPEMHRIFQNDLCKLRLQTTRSYVKLITDGQMGISPIG-GTSIRLNPQIQGLGPKFKLSVEIQNGGSTIMSNIPITVAHNQDLYRFERSYSALPILLPGLLCKVVFDLECINPEVAPQSIRVIVLNPMSSIPLISAIVNMPPSEAAEC 196
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: A0A0P1A9C4_PLAHL (Quinonprotein alcohol dehydrogenase-like superfamily n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A9C4_PLAHL) HSP 1 Score: 175 bits (444), Expect = 2.530e-48 Identity = 93/200 (46.50%), Postives = 134/200 (67.00%), Query Frame = 1
Query: 4 RAGSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSE 603
++G+ ++ IL R+A L + A G PPEQDIPL IPKKT LY+EQTQRE+ QA E+H +Q+DLC+LRL ARAYVK+I DG HG+ + A++RLNA+ G+GP F+I+L +QN G +T++ VAF +D +YC+++ I I L+P V + + + SI + GA+ V I V + PLVSA+++MPL E
Sbjct: 376 KSGALSLNILKRTASLDAISA----AAGPPPEQDIPLNIPKKTTLYLEQTQRERDQATEMHRHFQRDLCKLRLNTARAYVKIIKDG-HGLVSYSTGAAIRLNAQVLGIGPSFRIKLNIQNAGFKAVTSITVAFQFDHELYCVKQSLIPIPLLIPNVLYHYAVDVDSISQLGAADNVSIFVCAKESSIPLVSAIISMPLCE 570
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: W4FS53_9STRA (BBS1 domain-containing protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FS53_9STRA) HSP 1 Score: 175 bits (444), Expect = 3.220e-48 Identity = 98/203 (48.28%), Postives = 130/203 (64.04%), Query Frame = 1
Query: 1 HRAGSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSELM 609
H+ G+ + IL R+A L S A G PPEQDIPL +PKKTKLYVEQTQRE+ A E+H +Q+DLC+LRLT R+YVKVI DG+ VS A++RLNA+ QG+GP+FKIQL+LQN G + +P+A YD +Y + ++ LLPGV + + + S+ A+ + I V PLVSAVV MPLSEL+
Sbjct: 400 HKTGALTLKILQRNADLE----ASATAAGPPPEQDIPLNVPKKTKLYVEQTQRERDHATEMHRHFQRDLCKLRLTTVRSYVKVIRDGQGPVS-YATGAAIRLNAKVQGIGPRFKIQLQLQNSGTKFASEVPIALHYDHTLYRVGTSLFVVPLLLPGVPYAYTVDVESV--ASAADSIYIFVCGKDSCVPLVSAVVNMPLSELL 595
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: A0A8K1CTH1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTH1_PYTOL) HSP 1 Score: 175 bits (443), Expect = 3.690e-48 Identity = 100/201 (49.75%), Postives = 132/201 (65.67%), Query Frame = 1
Query: 4 RAGSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSEL 606
+ G+ ++ IL R+A L + SE A G PPEQDIPL IPKKTKLYVEQTQRE+ A E+H +Q+DLC+LRLT ARAYVK+I DG+ VS A++RLNA+ QGLGP F+I+L +QN G +T++ VAF YD +Y + +I ++P V + +T I + GA+ V I V PLVSAVV MPLSE+
Sbjct: 389 KGGALSLKILKRTASLEAI---SEAA-GPPPEQDIPLNIPKKTKLYVEQTQRERDHATEMHRHFQRDLCKLRLTTARAYVKIIKDGQGPVS-YSTGAAIRLNAQVQGLGPSFRIKLNVQNAGTKAVTDITVAFHYDHELYRFTKSVFVIPLVIPNVQYTYLADVTCISDAGAADSVYIFVCGKDSCIPLVSAVVNMPLSEV 584
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Match: A0A485KBD8_9STRA (Aste57867_1873 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KBD8_9STRA) HSP 1 Score: 174 bits (442), Expect = 5.370e-48 Identity = 98/201 (48.76%), Postives = 130/201 (64.68%), Query Frame = 1
Query: 1 HRAGSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQTQREKLQAKEIHHAYQKDLCRLRLTAARAYVKVITDGKHGVSALGRSASLRLNARCQGLGPKFKIQLELQNQGEHTLTNLPVAFSYDRNIYCMERGQIIISALLPGVASQHQIGITSIDEGGASGPVRIIVLSPSGPTPLVSAVVTMPLSE 603
H+ G+ + IL R+A L S A G PPEQDIPL +PKKTKLYVEQTQRE+ A E+H +Q+DLC+LRLT R+YVKVI DG+ VS AS+RLNA+ QG+GP+FKIQL+LQN G +P+A YD ++Y ++ + + LLPG+ + I + S+ GA+ + I V PLVSAVV MPL+E
Sbjct: 392 HKTGALTLKILQRNADLE----ASATAAGPPPEQDIPLNVPKKTKLYVEQTQRERDHATEMHRHFQRDLCKLRLTTVRSYVKVIRDGQGPVS-YATGASIRLNAKVQGVGPRFKIQLQLQNSGTKFAAEVPLALHYDHSLYRVDTSLLYVPLLLPGIQYAYTIDVESL--AGAADSIYIFVCGKDSCVPLVSAVVNMPLAE 585 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17991.4783.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17991.4783.1 >prot_H-elongata_contig17991.4783.1 ID=prot_H-elongata_contig17991.4783.1|Name=mRNA_H-elongata_contig17991.4783.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=206bp HRAGSPAVVILNRSAMLSKLKVTSEVATGRPPEQDIPLKIPKKTKLYVEQback to top mRNA from alignment at H-elongata_contig17991:5..1641+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17991.4783.1 ID=mRNA_H-elongata_contig17991.4783.1|Name=mRNA_H-elongata_contig17991.4783.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1637bp|location=Sequence derived from alignment at H-elongata_contig17991:5..1641+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17991:5..1641+ >mRNA_H-elongata_contig17991.4783.1 ID=mRNA_H-elongata_contig17991.4783.1|Name=mRNA_H-elongata_contig17991.4783.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1236bp|location=Sequence derived from alignment at H-elongata_contig17991:5..1641+ (Himanthalia elongata Himel1 dioecious)back to top |