mRNA_H-elongata_contig179896.4780.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179896.4780.1
Unique NamemRNA_H-elongata_contig179896.4780.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig179896.4780.1 vs. uniprot
Match: D8LDR6_ECTSI (1,3-beta-glucan-binding protein, family GH16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDR6_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.960e-25
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    1 RWYVDDILYCDRNYWYSSPSSGEEDYPFPAPFDTGFYLIINVAVGGTFTGGLID 162
            RWY+D +LYCDR+YWYS P  GEEDYPFPAPFDT FYLI+NVAVGG FTGGLID
Sbjct:  336 RWYLDGVLYCDRHYWYSRPGPGEEDYPFPAPFDTSFYLIMNVAVGGDFTGGLID 389
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BLAST of mRNA_H-elongata_contig179896.4780.1 vs. uniprot
Match: A0A6H5L3A1_9PHAE (GH16 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A1_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 5.070e-25
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 1 
Query:    1 RWYVDDILYCDRNYWYSSPSSGEEDYPFPAPFDTGFYLIINVAVGGTFTGGLID 162
            RWY+D +LYCDR+YWYS P  GEEDYPFPAPFDT FYLI+NVAVGG FTGGLID
Sbjct:  331 RWYLDGVLYCDRHYWYSRPGPGEEDYPFPAPFDTSFYLIMNVAVGGDFTGGLID 384
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BLAST of mRNA_H-elongata_contig179896.4780.1 vs. uniprot
Match: UPI000780E20A (glycoside hydrolase family 16 protein n=1 Tax=Bacillus niameyensis TaxID=1522308 RepID=UPI000780E20A)

HSP 1 Score: 73.6 bits (179), Expect = 2.280e-14
Identity = 30/50 (60.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:    1 RWYVDDILYCDRNYWYSSPSSGEEDYPFPAPFDTGFYLIINVAVGGTFTG 150
            RW+V+DILYC +N W+SS  +G+E+ PFPAPFD  FYL +N+AVGG + G
Sbjct:  189 RWFVNDILYCKQNTWFSSRENGKENVPFPAPFDRSFYLQLNLAVGGNWPG 238
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BLAST of mRNA_H-elongata_contig179896.4780.1 vs. uniprot
Match: A0A1V2YGN1_9FIRM (Uncharacterized protein n=1 Tax=Epulopiscium sp. Nuni2H_MBin001 TaxID=1884656 RepID=A0A1V2YGN1_9FIRM)

HSP 1 Score: 68.9 bits (167), Expect = 2.700e-12
Identity = 29/52 (55.77%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    1 RWYVDDILYCDRNYWYSSPSSGEEDYPFPAPFDTGFYLIINVAVGGTFTGGL 156
             WYVDD+LY   N WYS   +   +Y FPAPFD  FY+I+N+AVGGT+ G L
Sbjct:  875 NWYVDDVLYHTENNWYSKDPNESFEYAFPAPFDQEFYIILNLAVGGTYDGNL 926
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BLAST of mRNA_H-elongata_contig179896.4780.1 vs. uniprot
Match: UPI00073103B8 (carbohydrate binding domain-containing protein n=1 Tax=Defluviitalea phaphyphila TaxID=1473580 RepID=UPI00073103B8)

HSP 1 Score: 68.6 bits (166), Expect = 3.670e-12
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 1 
Query:    1 RWYVDDILYCDRNYWYSSPSSGEEDYPFPAPFDTGFYLIINVAVGGTFTGGLI 159
            RWYVDD LY   N WYS   +    Y FPAPF+  FY+I+N+A+GG F GGL+
Sbjct:  240 RWYVDDNLYLTLNNWYSENENNAAKYSFPAPFNQEFYIILNLAIGGNFDGGLL 292
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BLAST of mRNA_H-elongata_contig179896.4780.1 vs. uniprot
Match: A0A3B8SH54_9FIRM (GH16 domain-containing protein (Fragment) n=1 Tax=Lachnospiraceae bacterium TaxID=1898203 RepID=A0A3B8SH54_9FIRM)

HSP 1 Score: 66.6 bits (161), Expect = 1.750e-11
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 RWYVDDILYCDRNYWYSSPSSGEEDYPFPAPFDTGFYLIINVAVGGTFTGGLI 159
            RWYVD  LY   N WYS       D+ +PAPFD  FY+I+N+AVGGT+ G LI
Sbjct:  811 RWYVDGELYYTENNWYSLSDENPVDFAYPAPFDQEFYIILNLAVGGTYDGNLI 863
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BLAST of mRNA_H-elongata_contig179896.4780.1 vs. uniprot
Match: A0A1M7JHC6_9FIRM (Carbohydrate binding domain-containing protein n=1 Tax=Anaerosporobacter mobilis DSM 15930 TaxID=1120996 RepID=A0A1M7JHC6_9FIRM)

HSP 1 Score: 66.6 bits (161), Expect = 1.760e-11
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 RWYVDDILYCDRNYWYSSPSSGEEDYPFPAPFDTGFYLIINVAVGGTFTGGLI 159
            RWYVD  LY   N WYS       D+ +PAPFD  FY+I+N+AVGGT+ G LI
Sbjct:  801 RWYVDGELYYTENNWYSLSDENPVDFAYPAPFDQEFYIILNLAVGGTYDGNLI 853
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BLAST of mRNA_H-elongata_contig179896.4780.1 vs. uniprot
Match: UPI001FD59ACF (glycoside hydrolase family 16 protein n=1 Tax=Lederbergia sp. NSJ-179 TaxID=2931402 RepID=UPI001FD59ACF)

HSP 1 Score: 63.5 bits (153), Expect = 1.290e-10
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 RWYVDDILYCDRNYWYSSPSSGEEDYPFPAPFDTGFYLIINVAVGGTFTG 150
            RW+VDD LY  ++ W++S   GEE  PFPAPF+  FYL +N+AVGG + G
Sbjct:  188 RWFVDDKLYSKQSTWFTSHKKGEEQEPFPAPFNRPFYLQLNLAVGGNWPG 237
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BLAST of mRNA_H-elongata_contig179896.4780.1 vs. uniprot
Match: A0A7W5FQ11_9BACL (Beta-glucanase (GH16 family) n=2 Tax=Paenibacillus phyllosphaerae TaxID=274593 RepID=A0A7W5FQ11_9BACL)

HSP 1 Score: 63.9 bits (154), Expect = 1.570e-10
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 1 
Query:    1 RWYVDDILYCDRNYWYSSPSSGEEDYPFPAPFDTGFYLIINVAVGGTFTGGLI 159
            RWYVD  L+   N W S  +   + Y FPAPFD  FY+I+N+AVGG F GGLI
Sbjct:  883 RWYVDGKLFNTMNNWNSQGAGQPDKYAFPAPFDKEFYMILNLAVGGNFDGGLI 935
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BLAST of mRNA_H-elongata_contig179896.4780.1 vs. uniprot
Match: UPI001C5A2267 (carbohydrate binding domain-containing protein n=1 Tax=Paenibacillus sp. S150 TaxID=2749826 RepID=UPI001C5A2267)

HSP 1 Score: 62.4 bits (150), Expect = 5.470e-10
Identity = 29/52 (55.77%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    1 RWYVDDILYCDRNYWYSSPSSGEEDYPFPAPFDTGFYLIINVAVGGTFTGGL 156
            RWYVD  LY     WYS  S   E   FPAPFD  FY+I+N+AVGG + GGL
Sbjct:  666 RWYVDGRLYFTETDWYSWSSGQPEKNAFPAPFDQPFYMILNLAVGGNYDGGL 717
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179896.4780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDR6_ECTSI1.960e-2581.481,3-beta-glucan-binding protein, family GH16 n=1 T... [more]
A0A6H5L3A1_9PHAE5.070e-2581.48GH16 domain-containing protein n=1 Tax=Ectocarpus ... [more]
UPI000780E20A2.280e-1460.00glycoside hydrolase family 16 protein n=1 Tax=Baci... [more]
A0A1V2YGN1_9FIRM2.700e-1255.77Uncharacterized protein n=1 Tax=Epulopiscium sp. N... [more]
UPI00073103B83.670e-1254.72carbohydrate binding domain-containing protein n=1... [more]
A0A3B8SH54_9FIRM1.750e-1154.72GH16 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A1M7JHC6_9FIRM1.760e-1154.72Carbohydrate binding domain-containing protein n=1... [more]
UPI001FD59ACF1.290e-1054.00glycoside hydrolase family 16 protein n=1 Tax=Lede... [more]
A0A7W5FQ11_9BACL1.570e-1054.72Beta-glucanase (GH16 family) n=2 Tax=Paenibacillus... [more]
UPI001C5A22675.470e-1055.77carbohydrate binding domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179896contigH-elongata_contig179896:476..637 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.1
Seed ortholog evalue1e-20
Seed eggNOG ortholog2880.D8LDR6
EggNOG free text desc.Glycosyl hydrolases family 16
EggNOG OGs2S1W9@2759,COG2273@1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_001705.1
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930037.6458094-CDS-H-elongata_contig179896:475..6371622930037.6458094-CDS-H-elongata_contig179896:475..637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179896 476..637 -
1691679256.6465752-CDS-H-elongata_contig179896:475..6371691679256.6465752-CDS-H-elongata_contig179896:475..637Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179896 476..637 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179896.4780.1prot_H-elongata_contig179896.4780.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179896 476..637 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179896.4780.1

>prot_H-elongata_contig179896.4780.1 ID=prot_H-elongata_contig179896.4780.1|Name=mRNA_H-elongata_contig179896.4780.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=54bp
RWYVDDILYCDRNYWYSSPSSGEEDYPFPAPFDTGFYLIINVAVGGTFTG
GLID
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mRNA from alignment at H-elongata_contig179896:476..637-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179896.4780.1 ID=mRNA_H-elongata_contig179896.4780.1|Name=mRNA_H-elongata_contig179896.4780.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=162bp|location=Sequence derived from alignment at H-elongata_contig179896:476..637- (Himanthalia elongata Himel1 dioecious)
AGGTGGTACGTGGACGACATCTTGTACTGCGATAGGAACTACTGGTATTC
GAGTCCCTCGTCCGGAGAGGAAGACTACCCGTTCCCCGCCCCGTTCGACA
CGGGTTTTTACCTGATCATCAACGTTGCTGTGGGGGGAACGTTCACCGGG
GGTCTCATCGAC
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Coding sequence (CDS) from alignment at H-elongata_contig179896:476..637-

>mRNA_H-elongata_contig179896.4780.1 ID=mRNA_H-elongata_contig179896.4780.1|Name=mRNA_H-elongata_contig179896.4780.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=324bp|location=Sequence derived from alignment at H-elongata_contig179896:476..637- (Himanthalia elongata Himel1 dioecious)
AGGTGGTACGTGGACGACATCTTGTACTGCGATAGGAACTACTGGTATTC
GAGTCCCTCGTCCGGAGAGGAAGACTACCCGTTCCCCGCCCCGTTCGACA
CGGGTTTTTACCTGATCATCAACGTTGCTGTGGGGGGAACGTTCACCGGG
GGTCTCATCGACAGGTGGTACGTGGACGACATCTTGTACTGCGATAGGAA
CTACTGGTATTCGAGTCCCTCGTCCGGAGAGGAAGACTACCCGTTCCCCG
CCCCGTTCGACACGGGTTTTTACCTGATCATCAACGTTGCTGTGGGGGGA
ACGTTCACCGGGGGTCTCATCGAC
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