mRNA_H-elongata_contig179865.4779.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179865.4779.1
Unique NamemRNA_H-elongata_contig179865.4779.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig179865.4779.1 vs. uniprot
Match: A0A6H5JYX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX4_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.100e-14
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    4 ATSVQISFEDVGNWYNTGGFEVIPWLELLDLRKW 105
            AT  +ISFEDVGNWYNTGGFEVIPWLELLDLRKW
Sbjct:  197 ATEAEISFEDVGNWYNTGGFEVIPWLELLDLRKW 230
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BLAST of mRNA_H-elongata_contig179865.4779.1 vs. uniprot
Match: D7FUX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX5_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.100e-14
Identity = 31/34 (91.18%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    4 ATSVQISFEDVGNWYNTGGFEVIPWLELLDLRKW 105
            AT  +ISFEDVGNWYNTGGFEVIPWLELLDLRKW
Sbjct:  208 ATEAEISFEDVGNWYNTGGFEVIPWLELLDLRKW 241
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BLAST of mRNA_H-elongata_contig179865.4779.1 vs. uniprot
Match: A0A7S3UWA7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWA7_HETAK)

HSP 1 Score: 64.3 bits (155), Expect = 2.700e-11
Identity = 24/30 (80.00%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:   16 QISFEDVGNWYNTGGFEVIPWLELLDLRKW 105
            ++SFED G WYN+GGFEV+PWLELLDLRKW
Sbjct:  191 RVSFEDFGGWYNSGGFEVVPWLELLDLRKW 220
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BLAST of mRNA_H-elongata_contig179865.4779.1 vs. uniprot
Match: A0A7S1G6W4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G6W4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.530e-10
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:   16 QISFEDVGNWYNTGGFEVIPWLELLDLRKW 105
            +IS+E+ G WYN GGFEVIPWLELLDLRKW
Sbjct:  466 RISYEEFGQWYNEGGFEVIPWLELLDLRKW 495
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BLAST of mRNA_H-elongata_contig179865.4779.1 vs. uniprot
Match: A0A7S4DHJ8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHJ8_HETAK)

HSP 1 Score: 58.9 bits (141), Expect = 1.510e-9
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:   10 SVQISFEDVGNWYNTGGFEVIPWLELLDLRKW 105
            S +I FE+ GNWYN GGF+ IPWLELLDL KW
Sbjct:  136 SQRIGFEEFGNWYNNGGFQQIPWLELLDLTKW 167
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BLAST of mRNA_H-elongata_contig179865.4779.1 vs. uniprot
Match: A0A7S4MMA1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MMA1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.140e-9
Identity = 22/35 (62.86%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 EATSVQISFEDVGNWYNTGGFEVIPWLELLDLRKW 105
            E  SV+++FE  G+WYN+GGF ++PWLELLDL KW
Sbjct:  613 EGRSVEVTFEVFGDWYNSGGFSLVPWLELLDLAKW 647
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BLAST of mRNA_H-elongata_contig179865.4779.1 vs. uniprot
Match: A0A7S2K268_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K268_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.360e-9
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    7 TSVQISFEDVGNWYNTGGFEVIPWLELLDLRKW 105
            T  +ISFE  G+WYN+GG+E++PWLELLDL KW
Sbjct:  114 TKDKISFEVFGDWYNSGGYELVPWLELLDLAKW 146
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BLAST of mRNA_H-elongata_contig179865.4779.1 vs. uniprot
Match: K0RHW0_THAOC (EF-hand domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RHW0_THAOC)

HSP 1 Score: 58.9 bits (141), Expect = 4.020e-9
Identity = 21/35 (60.00%), Postives = 29/35 (82.86%), Query Frame = 1 
Query:    1 EATSVQISFEDVGNWYNTGGFEVIPWLELLDLRKW 105
            E ++V++SF+  G WYN+GGF ++PWLELLDL KW
Sbjct:   71 EESAVRVSFDTFGRWYNSGGFSLVPWLELLDLSKW 105
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BLAST of mRNA_H-elongata_contig179865.4779.1 vs. uniprot
Match: A0A7S1VLD0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VLD0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.710e-9
Identity = 20/32 (62.50%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:   10 SVQISFEDVGNWYNTGGFEVIPWLELLDLRKW 105
            S  I+FE  G+WYN+GG++++PWLELLDL KW
Sbjct:   52 STLITFEAFGDWYNSGGYQIVPWLELLDLAKW 83
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BLAST of mRNA_H-elongata_contig179865.4779.1 vs. uniprot
Match: A0A7S3QCH9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QCH9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.910e-8
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:   16 QISFEDVGNWYNTGGFEVIPWLELLDLRKW 105
            +I+F++ G+WYN GGFEV PWLELLDL KW
Sbjct: 1075 RINFDEFGDWYNEGGFEVAPWLELLDLNKW 1104
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179865.4779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYX4_9PHAE1.100e-1491.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUX5_ECTSI1.100e-1491.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S3UWA7_HETAK2.700e-1180.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1G6W4_9STRA4.530e-1080.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S4DHJ8_HETAK1.510e-971.88Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4MMA1_9STRA2.140e-962.86Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S2K268_9STRA2.360e-966.67Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
K0RHW0_THAOC4.020e-960.00EF-hand domain-containing protein (Fragment) n=1 T... [more]
A0A7S1VLD0_9STRA4.710e-962.50Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S3QCH9_9STRA1.910e-870.00Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179865contigH-elongata_contig179865:719..826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue7.5e-12
Seed eggNOG ortholog2880.D7FUX5
EggNOG OGs2CU92@1,2RK0N@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930037.5832746-CDS-H-elongata_contig179865:718..8261622930037.5832746-CDS-H-elongata_contig179865:718..826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179865 719..826 -
1691679256.6344955-CDS-H-elongata_contig179865:718..8261691679256.6344955-CDS-H-elongata_contig179865:718..826Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179865 719..826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179865.4779.1prot_H-elongata_contig179865.4779.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179865 719..826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179865.4779.1

>prot_H-elongata_contig179865.4779.1 ID=prot_H-elongata_contig179865.4779.1|Name=mRNA_H-elongata_contig179865.4779.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=36bp
EATSVQISFEDVGNWYNTGGFEVIPWLELLDLRKW*
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mRNA from alignment at H-elongata_contig179865:719..826-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179865.4779.1 ID=mRNA_H-elongata_contig179865.4779.1|Name=mRNA_H-elongata_contig179865.4779.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=108bp|location=Sequence derived from alignment at H-elongata_contig179865:719..826- (Himanthalia elongata Himel1 dioecious)
GAGGCAACCTCTGTGCAGATATCGTTCGAGGACGTGGGCAACTGGTACAA
CACGGGCGGTTTCGAGGTCATTCCTTGGCTGGAGCTCCTGGATCTACGCA
AGTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig179865:719..826-

>mRNA_H-elongata_contig179865.4779.1 ID=mRNA_H-elongata_contig179865.4779.1|Name=mRNA_H-elongata_contig179865.4779.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=216bp|location=Sequence derived from alignment at H-elongata_contig179865:719..826- (Himanthalia elongata Himel1 dioecious)
GAGGCAACCTCTGTGCAGATATCGTTCGAGGACGTGGGCAACTGGTACAA
CACGGGCGGTTTCGAGGTCATTCCTTGGCTGGAGCTCCTGGATCTACGCA
AGTGGTGAGAGGCAACCTCTGTGCAGATATCGTTCGAGGACGTGGGCAAC
TGGTACAACACGGGCGGTTTCGAGGTCATTCCTTGGCTGGAGCTCCTGGA
TCTACGCAAGTGGTGA
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