mRNA_H-elongata_contig17982.4778.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17982.4778.1
Unique NamemRNA_H-elongata_contig17982.4778.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17982.4778.1 vs. uniprot
Match: D7FJY9_ECTSI (Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJY9_ECTSI)

HSP 1 Score: 179 bits (455), Expect = 8.420e-52
Identity = 92/160 (57.50%), Postives = 110/160 (68.75%), Query Frame = 1 
Query:    1 QSYMLTLFYVCISSGAMLYVLWGKSEGGHEDS------------LGWMRLMETLGFIVDWLLLASIFCSVSYLLLWHGYLVASNVTTIEYFKWKRSMRDPGQYALAPGASIRLTDYDRGLLANLHEALGHEIYLWLWPGFGEGCGNRYCVVDRGVSETGE 444
            ++Y+LTL Y C+SSGAML +LW +   G                +GW+   E  G  VD L+L  +FCSVSYLL+WHGYLVA NVTTIEYFKWKRSMRDPGQYAL+PGASIRL++YD GLL+NL EA G  ++LW WPG G+GC NR     RG S  GE
Sbjct:  159 KAYLLTLLYACLSSGAMLVILWRRWRMGRAPESGSAAATSGGVVVGWV---EMAGVAVDGLVLGFVFCSVSYLLIWHGYLVAGNVTTIEYFKWKRSMRDPGQYALSPGASIRLSEYDSGLLSNLKEAFGQRLWLWPWPGLGDGCCNR----SRGASVRGE 311
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17982.4778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJY9_ECTSI8.420e-5257.50Palmitoyltransferase n=2 Tax=Ectocarpus TaxID=2879... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17982contigH-elongata_contig17982:177..1641 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.5
Seed ortholog evalue1.3e-42
Seed eggNOG ortholog2880.D7FJY9
KEGG rclassRC01904
KEGG koko:K14423,ko:K20028
KEGG ReactionR07482
KEGG Pathwayko00100,ko01100,ko01110,map00100,map01100,map01110
GOsGO:0000138,GO:0000254,GO:0003674,GO:0003824,GO:0004497,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005783,GO:0005789,GO:0005794,GO:0005795,GO:0005802,GO:0006629,GO:0006694,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008202,GO:0008610,GO:0009058,GO:0010150,GO:0012505,GO:0016020,GO:0016125,GO:0016126,GO:0016417,GO:0016491,GO:0016705,GO:0016709,GO:0016740,GO:0016746,GO:0016747,GO:0019222,GO:0019707,GO:0031323,GO:0031410,GO:0031982,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0048366,GO:0048367,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051239,GO:0055114,GO:0065007,GO:0071704,GO:0090693,GO:0097708,GO:0098791,GO:0098827,GO:0099402,GO:0140096,GO:1900055,GO:1901360,GO:1901362,GO:1901576,GO:1901615,GO:1901617,GO:2000024,GO:2000026,GO:2000377
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1315@2759
EC2.3.1.225
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionZinc finger, DHHC-type, palmitoyltransferase
Ec32 orthologEc-18_003140.1
Exons3
Model size498
Cds size489
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17982.4778.1prot_H-elongata_contig17982.4778.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17982 186..1641 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930037.4852564-UTR-H-elongata_contig17982:176..1851622930037.4852564-UTR-H-elongata_contig17982:176..185Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17982 177..185 +
1691679256.5869877-UTR-H-elongata_contig17982:176..1851691679256.5869877-UTR-H-elongata_contig17982:176..185Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17982 177..185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930037.499324-CDS-H-elongata_contig17982:185..3191622930037.499324-CDS-H-elongata_contig17982:185..319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17982 186..319 +
1691679256.6011498-CDS-H-elongata_contig17982:185..3191691679256.6011498-CDS-H-elongata_contig17982:185..319Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17982 186..319 +
1622930037.515295-CDS-H-elongata_contig17982:772..8691622930037.515295-CDS-H-elongata_contig17982:772..869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17982 773..869 +
1691679256.6146784-CDS-H-elongata_contig17982:772..8691691679256.6146784-CDS-H-elongata_contig17982:772..869Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17982 773..869 +
1622930037.5341609-CDS-H-elongata_contig17982:1383..16411622930037.5341609-CDS-H-elongata_contig17982:1383..1641Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17982 1384..1641 +
1691679256.6241589-CDS-H-elongata_contig17982:1383..16411691679256.6241589-CDS-H-elongata_contig17982:1383..1641Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17982 1384..1641 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17982.4778.1

>prot_H-elongata_contig17982.4778.1 ID=prot_H-elongata_contig17982.4778.1|Name=mRNA_H-elongata_contig17982.4778.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp
MLTLFYVCISSGAMLYVLWGKSEGGHEDSLGWMRLMETLGFIVDWLLLAS
IFCSVSYLLLWHGYLVASNVTTIEYFKWKRSMRDPGQYALAPGASIRLTD
YDRGLLANLHEALGHEIYLWLWPGFGEGCGNRYCVVDRGVSETGEGDGDG
EGGGTIAGGWWAG
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mRNA from alignment at H-elongata_contig17982:177..1641+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17982.4778.1 ID=mRNA_H-elongata_contig17982.4778.1|Name=mRNA_H-elongata_contig17982.4778.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1465bp|location=Sequence derived from alignment at H-elongata_contig17982:177..1641+ (Himanthalia elongata Himel1 dioecious)
CAGTCATACATGCTGACGTTATTCTACGTCTGCATCAGCTCGGGAGCAAT
GCTGTACGTTCTATGGGGGAAATCAGAGGGGGGGCATGAGGACTCGCTGG
GCTGGATGCGTTTGATGGAGACACTTGGGTTTATTGTGGACTGGTGAGCG
TCAGCAGGAGACGGGAGGTGGGGGGGAGAGGGGATAGGGTGATAAAATTT
ACAATCGTCGAAACATTATCTTGTATTTTTGTCTCTTCTTGATATATGTT
GACAAGCGGCTCTTCGTTCCAAAAAAAGAGTGCGAAATCGTGGAATCCCC
CCCCCCCCCCTACCCTACTATAATAGTAACGAATAAAAGCAGTGGGAGGC
TGAATCAAAAGCTTTATAACTGCGTATGATTCATCAAACTGTCGTGCAAT
AACCGAATTTCGGCGGTGATCTCTCAGGCAAAATGACTAATGAGTTGTGC
GGAATGGACTACGAATGCCAAGGCGGGCGGCAACCGTGGCGTTATCTCTC
GACACAGGACTGGATTCACGACACCCTCCCTCCCCTTCCCCCCCTAAACG
TAACGTTTACTGTTGCTTTCGCCTCATCGGTTCGAACTCCCTCAAGGCTG
CTGCTGGCGTCCATCTTCTGCTCGGTGTCGTACCTGCTTCTCTGGCATGG
GTACCTCGTGGCAAGCAACGTGACTACCATCGAGTACTTTAAGGTGAAGA
CAAAACACGCCGCCAGAGGGTGTGTCGACGTTGTACCGAGAGCTGCGTGC
GCTGCATTGCACTCTCTATGTAGTAATAGTACAGTACATTGGGTTTTATA
ATTAGTGTAGTTAGTATAGTATTAGTAGTACAATTTCCCGGAATCTATCG
ACACGATTCCATGTTCCTGCCCAGGTATACTCGTCCGGTATTGTTTTTTT
CCTTTGATGAGAAAATATTTTCAGGTAGAATTACTGTGCTATACTGTACT
TTGATCCGCGAGCGCGCGTGTGGGGGGTAAGGGGCGGTAGGGCGGCAGGA
AATTTTTCTATTGTAAGCCACCGTGTGCGGTTTAGGGACGACGGAAGTCT
TACATCCCGCTCACTTGTCGACATTTCTTATGCAACCCCCACCCCCGTAC
GCGAAGTAGGAGATCCTCTCGCGGCGGTCGCGATCTTCTCCCAGTATTTG
CTTTCTCCATTTTTTTAATGTTTTTTTCCGCTCGCGCAAACACACAACAC
AACGCAGTGGAAGCGGAGCATGCGAGATCCAGGGCAGTACGCCCTAGCGC
CGGGGGCATCGATACGACTGACTGACTACGATCGTGGCCTGCTCGCGAAC
CTTCACGAGGCGCTCGGGCACGAAATCTACCTGTGGTTGTGGCCGGGGTT
CGGGGAGGGGTGCGGAAATCGTTATTGTGTCGTAGATCGAGGCGTTTCTG
AGACGGGAGAGGGGGACGGAGACGGGGAAGGAGGAGGAACAATTGCCGGC
GGGTGGTGGGCAGGT
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Coding sequence (CDS) from alignment at H-elongata_contig17982:177..1641+

>mRNA_H-elongata_contig17982.4778.1 ID=mRNA_H-elongata_contig17982.4778.1|Name=mRNA_H-elongata_contig17982.4778.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig17982:177..1641+ (Himanthalia elongata Himel1 dioecious)
ATGCTGACGTTATTCTACGTCTGCATCAGCTCGGGAGCAATGCTGTACGT
TCTATGGGGGAAATCAGAGGGGGGGCATGAGGACTCGCTGGGCTGGATGC
GTTTGATGGAGACACTTGGGTTTATTGTGGACTGATGCTGACGTTATTCT
ACGTCTGCATCAGCTCGGGAGCAATGCTGTACGTTCTATGGGGGAAATCA
GAGGGGGGGCATGAGGACTCGCTGGGCTGGATGCGTTTGATGGAGACACT
TGGGTTTATTGTGGACTGGCTGCTGCTGGCGTCCATCTTCTGCTCGGTGT
CGTACCTGCTTCTCTGGCATGGGTACCTCGTGGCAAGCAACGTGACTACC
ATCGAGTACTTTAAGGCTGCTGCTGGCGTCCATCTTCTGCTCGGTGTCGT
ACCTGCTTCTCTGGCATGGGTACCTCGTGGCAAGCAACGTGACTACCATC
GAGTACTTTAAGTGGAAGCGGAGCATGCGAGATCCAGGGCAGTACGCCCT
AGCGCCGGGGGCATCGATACGACTGACTGACTACGATCGTGGCCTGCTCG
CGAACCTTCACGAGGCGCTCGGGCACGAAATCTACCTGTGGTTGTGGCCG
GGGTTCGGGGAGGGGTGCGGAAATCGTTATTGTGTCGTAGATCGAGGCGT
TTCTGAGACGGGAGAGGGGGACGGAGACGGGGAAGGAGGAGGAACAATTG
CCGGCGGGTGGTGGGCAGGTTGGAAGCGGAGCATGCGAGATCCAGGGCAG
TACGCCCTAGCGCCGGGGGCATCGATACGACTGACTGACTACGATCGTGG
CCTGCTCGCGAACCTTCACGAGGCGCTCGGGCACGAAATCTACCTGTGGT
TGTGGCCGGGGTTCGGGGAGGGGTGCGGAAATCGTTATTGTGTCGTAGAT
CGAGGCGTTTCTGAGACGGGAGAGGGGGACGGAGACGGGGAAGGAGGAGG
AACAATTGCCGGCGGGTGGTGGGCAGGT
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