mRNA_H-elongata_contig179807.4777.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179807.4777.1
Unique NamemRNA_H-elongata_contig179807.4777.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig179807.4777.1 vs. uniprot
Match: D8LBI6_ECTSI (CS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI6_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 7.220e-40
Identity = 69/97 (71.13%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    1 ELSRSDVKVDVTAHMLKLSLRNQTVISGPLFEQVDPEGCTWQIDNSSTGQPKEITITLLKARPATSKEQWWRVPLKGLESRAPVGRPSQPADPELVR 291
            ++SRSDVKV+VT  MLKLSLRNQ VI+G LF+ VDPEGCTWQIDN   GQPKE+TITLLKA PA S+E WWR PLKGLE+R P  +P   ADPE+VR
Sbjct:   99 DVSRSDVKVEVTGSMLKLSLRNQPVIAGNLFKPVDPEGCTWQIDNPGPGQPKEVTITLLKAEPAKSREAWWRAPLKGLETRRPAPKP---ADPEMVR 192
[Close]
BLAST of mRNA_H-elongata_contig179807.4777.1 vs. uniprot
Match: A0A6H5JLQ0_9PHAE (CS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLQ0_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.430e-37
Identity = 67/97 (69.07%), Postives = 79/97 (81.44%), Query Frame = 1 
Query:    1 ELSRSDVKVDVTAHMLKLSLRNQTVISGPLFEQVDPEGCTWQIDNSSTGQPKEITITLLKARPATSKEQWWRVPLKGLESRAPVGRPSQPADPELVR 291
            +++RSDVKV+VT  MLKLSLRNQ VI+G LF+ VDPEGCTWQID+   GQPKE+TITLLKA PA S+E WWR PLKGLE+R P  +P   ADPE+VR
Sbjct:  201 KVARSDVKVEVTGTMLKLSLRNQPVIAGNLFKPVDPEGCTWQIDDPGPGQPKEVTITLLKAEPAKSREAWWRAPLKGLETRRPAPKP---ADPEMVR 294
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179807.4777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LBI6_ECTSI7.220e-4071.13CS domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JLQ0_9PHAE1.430e-3769.07CS domain-containing protein n=1 Tax=Ectocarpus sp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179807contigH-elongata_contig179807:274..1228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCS domain
Ec32 orthologEc-27_003850.1
Exons3
Model size297
Cds size297
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179807.4777.1prot_H-elongata_contig179807.4777.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179807 274..1228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930037.3843038-CDS-H-elongata_contig179807:273..3541622930037.3843038-CDS-H-elongata_contig179807:273..354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179807 274..354 +
1691679256.5589814-CDS-H-elongata_contig179807:273..3541691679256.5589814-CDS-H-elongata_contig179807:273..354Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179807 274..354 +
1622930037.4094594-CDS-H-elongata_contig179807:636..6851622930037.4094594-CDS-H-elongata_contig179807:636..685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179807 637..685 +
1691679256.570818-CDS-H-elongata_contig179807:636..6851691679256.570818-CDS-H-elongata_contig179807:636..685Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179807 637..685 +
1622930037.4444678-CDS-H-elongata_contig179807:1061..12281622930037.4444678-CDS-H-elongata_contig179807:1061..1228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179807 1062..1228 +
1691679256.578644-CDS-H-elongata_contig179807:1061..12281691679256.578644-CDS-H-elongata_contig179807:1061..1228Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179807 1062..1228 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179807.4777.1

>prot_H-elongata_contig179807.4777.1 ID=prot_H-elongata_contig179807.4777.1|Name=mRNA_H-elongata_contig179807.4777.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
ELSRSDVKVDVTAHMLKLSLRNQTVISGPLFEQVDPEGCTWQIDNSSTGQ
PKEITITLLKARPATSKEQWWRVPLKGLESRAPVGRPSQPADPELVRA*
back to top

mRNA from alignment at H-elongata_contig179807:274..1228+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179807.4777.1 ID=mRNA_H-elongata_contig179807.4777.1|Name=mRNA_H-elongata_contig179807.4777.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=955bp|location=Sequence derived from alignment at H-elongata_contig179807:274..1228+ (Himanthalia elongata Himel1 dioecious)
GAGCTTTCGCGATCAGACGTTAAGGTGGATGTGACGGCCCACATGCTCAA
GCTCAGTCTGCGCAACCAGACGGTCATCTCGGTGAGCAGTCCAGCAGGGC
GCTGGAAACTTCTGCTGCTACTGTTGTAGCGGCGACGGCGACCAATTGTT
TCCCCCATATTTTAGTTATACTCTTATTGAATACAAAACACTTATTTATT
TTAATATATTATGCTTGAGCGCCGTCGATCTGATTGGCCGGTATCACAGG
TCGAAAAAGGTGTAGTTGGGGGCTGCGGTCTGTGGGAGACTTTTAACTAC
TGCTTTCTCTGCCCCCCTTCCCTCGACCCCTATTGGACCTCGCTCGCGTT
GCTATCTCGGCAGGGCCCCCTGTTCGAGCAGGTCGACCCAGAGGGATGCA
CCTGGCAGATCGGTGAGCGCGCGTTTTGGGGTACACCCTTTAATGCTGCG
ACCGGCGCGGTCTTGACCCCGCCGCGTAAAATAATTTGGGCAGAGAGCGA
GAAAAAAAGAACGCCCTAACGAGGCAGGCTTTGTCGGAGAGGACTAGAGG
CAGAACAGTACAGTAAAATTAGTAACTCTACATCTCGCAGGGAAAATAAC
ATACTGTGGTATCATAAGGCGCGGGCTGCAGGACCGATTCACAGGCGCGC
GGAACCATGAATCGTCGGTTGGCCTTGCGAGTTTATTTGGAAGTATTGCT
CAGACAAAAAGGTCGATCAACCCATCGCCCCACTCCCGCCCTCAATGGTT
GTTTTTTTCACCTGCGGGCACTCTGATGCCGCTTGCAGATAACTCGTCAA
CGGGTCAGCCGAAAGAGATTACGATCACTCTCCTCAAGGCTCGTCCAGCC
ACCAGCAAGGAACAGTGGTGGAGAGTACCGTTGAAAGGCTTGGAAAGCCG
AGCGCCTGTTGGTCGGCCTTCACAACCGGCGGATCCGGAATTGGTGAGAG
CGTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig179807:274..1228+

>mRNA_H-elongata_contig179807.4777.1 ID=mRNA_H-elongata_contig179807.4777.1|Name=mRNA_H-elongata_contig179807.4777.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig179807:274..1228+ (Himanthalia elongata Himel1 dioecious)
GAGCTTTCGCGATCAGACGTTAAGGTGGATGTGACGGCCCACATGCTCAA
GCTCAGTCTGCGCAACCAGACGGTCATCTCGGAGCTTTCGCGATCAGACG
TTAAGGTGGATGTGACGGCCCACATGCTCAAGCTCAGTCTGCGCAACCAG
ACGGTCATCTCGGGCCCCCTGTTCGAGCAGGTCGACCCAGAGGGATGCAC
CTGGCAGATCGGGCCCCCTGTTCGAGCAGGTCGACCCAGAGGGATGCACC
TGGCAGATCGATAACTCGTCAACGGGTCAGCCGAAAGAGATTACGATCAC
TCTCCTCAAGGCTCGTCCAGCCACCAGCAAGGAACAGTGGTGGAGAGTAC
CGTTGAAAGGCTTGGAAAGCCGAGCGCCTGTTGGTCGGCCTTCACAACCG
GCGGATCCGGAATTGGTGAGAGCGTGAATAACTCGTCAACGGGTCAGCCG
AAAGAGATTACGATCACTCTCCTCAAGGCTCGTCCAGCCACCAGCAAGGA
ACAGTGGTGGAGAGTACCGTTGAAAGGCTTGGAAAGCCGAGCGCCTGTTG
GTCGGCCTTCACAACCGGCGGATCCGGAATTGGTGAGAGCGTGA
back to top