mRNA_H-elongata_contig179770.4775.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179770.4775.1
Unique NamemRNA_H-elongata_contig179770.4775.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig179770.4775.1 vs. uniprot
Match: D8LCD1_ECTSI (Ribosomal protein L34 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCD1_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.610e-24
Identity = 50/57 (87.72%), Postives = 55/57 (96.49%), Query Frame = 3 
Query:    3 RPKQYKNLKKREKTVSRAYGGSCCAKCLRQRVVRAFLVEEQKIVKQVLLEKQKKKKA 173
            RPK+YKNLKKR+KTVSRAYGGS CA C+RQRVVRAFL+EEQKIVK+VLLEKQKKKKA
Sbjct:   81 RPKEYKNLKKRQKTVSRAYGGSLCAPCVRQRVVRAFLIEEQKIVKKVLLEKQKKKKA 137
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BLAST of mRNA_H-elongata_contig179770.4775.1 vs. uniprot
Match: A0A6V2RVW8_HETAK (Hypothetical protein n=2 Tax=Sar TaxID=2698737 RepID=A0A6V2RVW8_HETAK)

HSP 1 Score: 92.4 bits (228), Expect = 9.000e-23
Identity = 46/57 (80.70%), Postives = 53/57 (92.98%), Query Frame = 3 
Query:    3 RPKQYKNLKKREKTVSRAYGGSCCAKCLRQRVVRAFLVEEQKIVKQVLLEKQKKKKA 173
            RPKQYKNLKKREKTVSRAYGGS CA C+RQR+VRAFL+EEQKIVK++++EK KK KA
Sbjct:   60 RPKQYKNLKKREKTVSRAYGGSACAGCVRQRIVRAFLIEEQKIVKKMIMEKMKKAKA 116
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BLAST of mRNA_H-elongata_contig179770.4775.1 vs. uniprot
Match: K3WQZ0_GLOUD (Uncharacterized protein n=4 Tax=Pythiaceae TaxID=4782 RepID=K3WQZ0_GLOUD)

HSP 1 Score: 84.7 bits (208), Expect = 9.310e-20
Identity = 42/56 (75.00%), Postives = 50/56 (89.29%), Query Frame = 3 
Query:    6 PKQYKNLKKREKTVSRAYGGSCCAKCLRQRVVRAFLVEEQKIVKQVLLEKQKKKKA 173
            PK+YKN+ K ++TVSRAYGGS CA C+RQR+VRAFL+EEQKIVK+VLLEK KKK A
Sbjct:   61 PKEYKNVSKTQRTVSRAYGGSRCANCVRQRIVRAFLIEEQKIVKKVLLEKMKKKSA 116
[Close]
BLAST of mRNA_H-elongata_contig179770.4775.1 vs. uniprot
Match: A0A835ZPJ0_9STRA (Ribosomal protein L34e-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPJ0_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 9.310e-20
Identity = 44/55 (80.00%), Postives = 50/55 (90.91%), Query Frame = 3 
Query:    3 RPKQYKNLKKREKTVSRAYGGSCCAKCLRQRVVRAFLVEEQKIVKQVLLEKQKKK 167
            RPK+YKNLK+REKTVSRAYGGS CA C+RQRVVRAFL+EEQKIVK++L EK K K
Sbjct:   60 RPKEYKNLKRREKTVSRAYGGSRCAACVRQRVVRAFLIEEQKIVKKLLAEKIKGK 114
[Close]
BLAST of mRNA_H-elongata_contig179770.4775.1 vs. uniprot
Match: M4B9F0_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B9F0_HYAAE)

HSP 1 Score: 81.6 bits (200), Expect = 8.720e-19
Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = 3 
Query:    3 RPKQYKNLKKREKTVSRAYGGSCCAKCLRQRVVRAFLVEEQKIVKQVLLEKQKKKKA 173
            +PK+YKN+ K  +TVSRAYGGS CA C+RQR+VRAFL+EEQKIVK+VLLEK KK K+
Sbjct:   38 KPKEYKNVSKTHRTVSRAYGGSRCALCVRQRIVRAFLIEEQKIVKKVLLEKLKKNKS 94
[Close]
BLAST of mRNA_H-elongata_contig179770.4775.1 vs. uniprot
Match: F0W7S6_9STRA (Ribosomal protein L34 putative n=2 Tax=Albugo TaxID=65356 RepID=F0W7S6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.490e-18
Identity = 42/55 (76.36%), Postives = 48/55 (87.27%), Query Frame = 3 
Query:    3 RPKQYKNLKKREKTVSRAYGGSCCAKCLRQRVVRAFLVEEQKIVKQVLLEKQKKK 167
            RPK YK L K ++TVSRAYGGS CAKC+R R+VRAFLVEEQKIVK+VLLEK K+K
Sbjct:   60 RPKVYKTLSKTQRTVSRAYGGSRCAKCVRNRIVRAFLVEEQKIVKKVLLEKMKRK 114
[Close]
BLAST of mRNA_H-elongata_contig179770.4775.1 vs. uniprot
Match: A0A7S2TCS5_PROMC (Hypothetical protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2TCS5_PROMC)

HSP 1 Score: 81.6 bits (200), Expect = 1.520e-18
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 3 
Query:    3 RPKQYKNLKKREKTVSRAYGGSCCAKCLRQRVVRAFLVEEQKIVKQVLLEKQKKKK 170
            RPKQYKNL KREK+VSRAYGG+ CA C+R+R+VRAFL+EEQK+VK++L +K KK K
Sbjct:   60 RPKQYKNLHKREKSVSRAYGGNRCAGCVRERIVRAFLIEEQKVVKRLLAQKAKKSK 115
[Close]
BLAST of mRNA_H-elongata_contig179770.4775.1 vs. uniprot
Match: A0A7S3K4R2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4R2_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 2.220e-18
Identity = 39/50 (78.00%), Postives = 47/50 (94.00%), Query Frame = 3 
Query:    6 PKQYKNLKKREKTVSRAYGGSCCAKCLRQRVVRAFLVEEQKIVKQVLLEK 155
            P QYKN+ KRE+TVSRAYGGS CAKC+RQR++RAFL+EEQKIVKQ++LEK
Sbjct:   61 PFQYKNVHKRERTVSRAYGGSRCAKCVRQRIIRAFLIEEQKIVKQMMLEK 110
[Close]
BLAST of mRNA_H-elongata_contig179770.4775.1 vs. uniprot
Match: A0A7S2UXI2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXI2_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.230e-18
Identity = 40/56 (71.43%), Postives = 50/56 (89.29%), Query Frame = 3 
Query:    3 RPKQYKNLKKREKTVSRAYGGSCCAKCLRQRVVRAFLVEEQKIVKQVLLEKQKKKK 170
            RP +YKN+KKREKTV+RAYGGS C KC++ R+VRAFL+EEQKIVK+++ EK KKKK
Sbjct:   60 RPIKYKNMKKREKTVTRAYGGSECGKCVKDRIVRAFLIEEQKIVKKMVAEKLKKKK 115
[Close]
BLAST of mRNA_H-elongata_contig179770.4775.1 vs. uniprot
Match: M4B9E9_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B9E9_HYAAE)

HSP 1 Score: 81.6 bits (200), Expect = 4.790e-18
Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = 3 
Query:    3 RPKQYKNLKKREKTVSRAYGGSCCAKCLRQRVVRAFLVEEQKIVKQVLLEKQKKKKA 173
            +PK+YKN+ K  +TVSRAYGGS CA C+RQR+VRAFL+EEQKIVK+VLLEK KK K+
Sbjct:  105 KPKEYKNVSKTHRTVSRAYGGSRCALCVRQRIVRAFLIEEQKIVKKVLLEKLKKNKS 161
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179770.4775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCD1_ECTSI1.610e-2487.72Ribosomal protein L34 n=1 Tax=Ectocarpus siliculos... [more]
A0A6V2RVW8_HETAK9.000e-2380.70Hypothetical protein n=2 Tax=Sar TaxID=2698737 Rep... [more]
K3WQZ0_GLOUD9.310e-2075.00Uncharacterized protein n=4 Tax=Pythiaceae TaxID=4... [more]
A0A835ZPJ0_9STRA9.310e-2080.00Ribosomal protein L34e-domain-containing protein n... [more]
M4B9F0_HYAAE8.720e-1971.93Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
F0W7S6_9STRA1.490e-1876.36Ribosomal protein L34 putative n=2 Tax=Albugo TaxI... [more]
A0A7S2TCS5_PROMC1.520e-1871.43Hypothetical protein n=1 Tax=Prorocentrum micans T... [more]
A0A7S3K4R2_9STRA2.220e-1878.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2UXI2_9STRA3.230e-1871.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
M4B9E9_HYAAE4.790e-1871.93Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179770contigH-elongata_contig179770:759..1280 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size199
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930037.2265384-CDS-H-elongata_contig179770:758..8621622930037.2265384-CDS-H-elongata_contig179770:758..862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179770 759..862 -
1691679256.5080912-CDS-H-elongata_contig179770:758..8621691679256.5080912-CDS-H-elongata_contig179770:758..862Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179770 759..862 -
1622930037.2579803-CDS-H-elongata_contig179770:1186..12801622930037.2579803-CDS-H-elongata_contig179770:1186..1280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179770 1187..1280 -
1691679256.5153725-CDS-H-elongata_contig179770:1186..12801691679256.5153725-CDS-H-elongata_contig179770:1186..1280Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179770 1187..1280 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179770.4775.1prot_H-elongata_contig179770.4775.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179770 759..1280 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179770.4775.1

>prot_H-elongata_contig179770.4775.1 ID=prot_H-elongata_contig179770.4775.1|Name=mRNA_H-elongata_contig179770.4775.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
CAPSSTRILRNARKPFPALTGGRVARSACDSEWCVLSWSRSRRSSSKCSW
RSRRRKRPKSDLNPD*
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mRNA from alignment at H-elongata_contig179770:759..1280-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179770.4775.1 ID=mRNA_H-elongata_contig179770.4775.1|Name=mRNA_H-elongata_contig179770.4775.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=522bp|location=Sequence derived from alignment at H-elongata_contig179770:759..1280- (Himanthalia elongata Himel1 dioecious)
TGCGCCCCAAGCAGTACAAGAATCTTAAGAAACGCGAGAAAACCGTTTCC
CGCGCTTACGGGGGGTCGTGTTGCGCGAAGTGCCTGCGACAGCGGTGAGT
GGGCTCCATCGAGAGACGCAGGTTGTCTTGCCGGATTTGGCAACTCTTGT
AGGTGTTGAAAGGGATGGCTTTTTGTTGCGAGGAGTGAAATGGACAAAGT
TTGATGATTCTTTCGTCTTTCGTATGACGCCCACCCGACCGCGAGGAGCG
TTTTATATCTGTGTATCTTGGACGCTCGTCGAAACTTCCATTTGTATTCC
ATGTTCATCGTCAACGTGGACATCGGATCACCAATCCACTTTCTTTCGTG
GAGATTCTCTTATCATGAATCGATGTTTGCTTTTACATGTGCCTCCTCCC
GTCCCTCCTTTTTGTTAGAGTGGTGCGTGCTTTCTTGGTCGAGGAGCAGA
AGATCGTCAAGCAAGTGCTCTTGGAGAAGCAGAAGAAGAAAAAGGCCTAA
ATCCGACTTGAATCCGGATTAA
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Coding sequence (CDS) from alignment at H-elongata_contig179770:759..1280-

>mRNA_H-elongata_contig179770.4775.1 ID=mRNA_H-elongata_contig179770.4775.1|Name=mRNA_H-elongata_contig179770.4775.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig179770:759..1280- (Himanthalia elongata Himel1 dioecious)
TGCGCCCCAAGCAGTACAAGAATCTTAAGAAACGCGAGAAAACCGTTTCC
CGCGCTTACGGGGGGTCGTGTTGCGCGAAGTGCCTGCGACAGCGTGCGCC
CCAAGCAGTACAAGAATCTTAAGAAACGCGAGAAAACCGTTTCCCGCGCT
TACGGGGGGTCGTGTTGCGCGAAGTGCCTGCGACAGCGAGTGGTGCGTGC
TTTCTTGGTCGAGGAGCAGAAGATCGTCAAGCAAGTGCTCTTGGAGAAGC
AGAAGAAGAAAAAGGCCTAAATCCGACTTGAATCCGGATTAAAGTGGTGC
GTGCTTTCTTGGTCGAGGAGCAGAAGATCGTCAAGCAAGTGCTCTTGGAG
AAGCAGAAGAAGAAAAAGGCCTAAATCCGACTTGAATCCGGATTAA
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