mRNA_H-elongata_contig17976.4773.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17976.4773.1
Unique NamemRNA_H-elongata_contig17976.4773.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 3.220e-29
Identity = 54/87 (62.07%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    1 CTAQYRIIAWTLNSPGSQNDRTAFKFSGFHRIFDQLSESYYVLGDAANLASDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFGI 261
            C AQYRI+AW +N PGSQNDRTAF FSGF ++   L E ++V+GDAA  AS+R++VP+PG  L  SQDA NYY SQ R AIE T+GI
Sbjct:  143 CDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYMSQCRMAIEQTYGI 229          
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.970e-28
Identity = 54/87 (62.07%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    1 CTAQYRIIAWTLNSPGSQNDRTAFKFSGFHRIFDQLSESYYVLGDAANLASDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFGI 261
            C AQYRI+AW +N PGSQNDRTAF FSGF ++   L E ++V+GDAA  AS+R++VP+PG  L  SQDA NYY SQ R AIE T+GI
Sbjct:  214 CDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGI 300          
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 2.330e-28
Identity = 52/87 (59.77%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    1 CTAQYRIIAWTLNSPGSQNDRTAFKFSGFHRIFDQLSESYYVLGDAANLASDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFGI 261
            C AQYRI+AWT++ PGSQNDRTAF F+ F ++   L E ++V+GDAA  AS+R++VP+PG  L  SQDA NYY SQ R AIE T+GI
Sbjct:   62 CDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDACNYYVSQCRMAIEQTYGI 148          
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.290e-27
Identity = 51/86 (59.30%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 CTAQYRIIAWTLNSPGSQNDRTAFKFSGFHRIFDQLSESYYVLGDAANLASDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFG 258
            C A+Y+I AWT+N PGS NDRTAFK SGF R+   L +  Y++GD A  ASD++LVPYPG  L  SQD+YN+YQSQ R  IE  FG
Sbjct:  155 CNARYKITAWTMNCPGSCNDRTAFKHSGFERVLKTLPKGAYIVGDGAYPASDQVLVPYPGTTLTPSQDSYNFYQSQARIFIEQAFG 240          
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 7.600e-27
Identity = 53/87 (60.92%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 CTAQYRIIAWTLNSPGSQNDRTAFKFSGFHRIFDQLSESYYVLGDAANLASDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFGI 261
            C A+Y IIAWT+N PGS NDRTAFK S F  +   L    Y++GDAA  ASD++LVPYPG  L  SQDAYN+YQSQ R +IE  FGI
Sbjct:  221 CNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPYPGTSLTRSQDAYNFYQSQARISIEQAFGI 307          
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 5.910e-26
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 1
Query:    1 CTAQYRIIAWTLNSPGSQNDRTAFKFSGFHRIFDQLSESYYVLGDAANLASDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFGI 261
            C A Y II WT+N PGSQNDRTAFK SGF  +  ++    +++GDAA  AS+R+LVP PG  L  SQDAYN+YQSQ R +IE  FGI
Sbjct:  225 CNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVPDPGTALTLSQDAYNFYQSQARISIEQAFGI 311          
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: A0A6H5JA67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA67_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 4.330e-11
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 1
Query:  106 LSESYYVLGDAANLASDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFGI 261
            L   YYV+GD+A  A+D++L PYPG DL   QDA+N++QSQ R  IE TFGI
Sbjct:   15 LHRDYYVVGDSAYGATDKMLAPYPGCDLNADQDAFNFFQSQGRICIEQTFGI 66          
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.320e-8
Identity = 27/51 (52.94%), Postives = 37/51 (72.55%), Query Frame = 1
Query:   49 SQNDRTAFKFSGFHRIFDQLSESYYVLGDAANLASDRLLVPYPGLDLPDSQ 201
            SQNDRTAF FSGF ++   L E ++V+G+AA  AS+R++VP+PG   P  Q
Sbjct:  225 SQNDRTAFNFSGFDKLLAGLPEGHFVVGNAAYGASERVVVPFPGTSPPXEQ 275          
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 5.820e-8
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 1
Query:  124 VLGDAANLASDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFGI 261
            V+GDAA  AS+R++VP+PG  L  SQDA N Y SQYR AIE T+GI
Sbjct:  204 VVGDAAYGASERVVVPFPGTSLSASQDACNNYVSQYRMAIEQTYGI 249          
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Match: UPI001D0758E3 (protein ALP1-like n=2 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D0758E3)

HSP 1 Score: 54.7 bits (130), Expect = 1.050e-6
Identity = 37/103 (35.92%), Postives = 49/103 (47.57%), Query Frame = 1
Query:    1 CTAQYRIIAWTLNSPGSQNDRTAFKFSGFHRIFDQLS----------------ESYYVLGDAANLASDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFGI 261
            C A YR     + S GSQ+D   F+ S F +  D  S                 S++V GD A      LL PYPG +L +S++ YNY  S+ R  IE+ FGI
Sbjct:  237 CDASYRFTLVDIGSFGSQSDWGVFRESAFGKALDSGSLKLPPEKSLPGSDVNFPSFFV-GDEAFPLKPYLLRPYPGRNLEESKNVYNYRLSRARRTIENAFGI 338          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17976.4773.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5K540_9PHAE3.220e-2962.07DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE1.970e-2862.07DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KNF2_9PHAE2.330e-2859.77DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5KCG0_9PHAE2.290e-2759.30DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K3F2_9PHAE7.600e-2760.92DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE5.910e-2658.62DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JA67_9PHAE4.330e-1157.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJA1_9PHAE3.320e-852.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS8_9PHAE5.820e-863.04DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
UPI001D0758E31.050e-635.92protein ALP1-like n=2 Tax=Coccinella septempunctat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17976contigH-elongata_contig17976:4404..4664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930037.1231031-CDS-H-elongata_contig17976:4403..46641622930037.1231031-CDS-H-elongata_contig17976:4403..4664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17976 4404..4664 +
1691679256.4863663-CDS-H-elongata_contig17976:4403..46641691679256.4863663-CDS-H-elongata_contig17976:4403..4664Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17976 4404..4664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17976.4773.1prot_H-elongata_contig17976.4773.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17976 4404..4664 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17976.4773.1

>prot_H-elongata_contig17976.4773.1 ID=prot_H-elongata_contig17976.4773.1|Name=mRNA_H-elongata_contig17976.4773.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=87bp
CTAQYRIIAWTLNSPGSQNDRTAFKFSGFHRIFDQLSESYYVLGDAANLA
SDRLLVPYPGLDLPDSQDAYNYYQSQYRTAIEHTFGI
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mRNA from alignment at H-elongata_contig17976:4404..4664+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17976.4773.1 ID=mRNA_H-elongata_contig17976.4773.1|Name=mRNA_H-elongata_contig17976.4773.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=261bp|location=Sequence derived from alignment at H-elongata_contig17976:4404..4664+ (Himanthalia elongata Himel1 dioecious)
TGTACTGCGCAGTACAGGATAATCGCTTGGACCTTGAACTCCCCCGGGAG CCAGAACGACCGGACAGCGTTCAAGTTCTCTGGTTTCCACAGGATTTTTG ACCAGCTATCTGAAAGCTACTACGTCCTTGGTGACGCAGCGAATTTGGCT TCCGACCGTTTGCTCGTGCCGTACCCTGGCTTGGACCTGCCCGACAGCCA GGATGCATACAACTACTACCAGTCTCAATACAGGACGGCCATTGAACATA CGTTCGGAATA
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Coding sequence (CDS) from alignment at H-elongata_contig17976:4404..4664+

>mRNA_H-elongata_contig17976.4773.1 ID=mRNA_H-elongata_contig17976.4773.1|Name=mRNA_H-elongata_contig17976.4773.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=522bp|location=Sequence derived from alignment at H-elongata_contig17976:4404..4664+ (Himanthalia elongata Himel1 dioecious)
TGTACTGCGCAGTACAGGATAATCGCTTGGACCTTGAACTCCCCCGGGAG
CCAGAACGACCGGACAGCGTTCAAGTTCTCTGGTTTCCACAGGATTTTTG
ACCAGCTATCTGAAAGCTACTACGTCCTTGGTGACGCAGCGAATTTGGCT
TCCGACCGTTTGCTCGTGCCGTACCCTGGCTTGGACCTGCCCGACAGCCA
GGATGCATACAACTACTACCAGTCTCAATACAGGACGGCCATTGAACATA
CGTTCGGAATATGTACTGCGCAGTACAGGATAATCGCTTGGACCTTGAAC
TCCCCCGGGAGCCAGAACGACCGGACAGCGTTCAAGTTCTCTGGTTTCCA
CAGGATTTTTGACCAGCTATCTGAAAGCTACTACGTCCTTGGTGACGCAG
CGAATTTGGCTTCCGACCGTTTGCTCGTGCCGTACCCTGGCTTGGACCTG
CCCGACAGCCAGGATGCATACAACTACTACCAGTCTCAATACAGGACGGC
CATTGAACATACGTTCGGAATA
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