mRNA_H-elongata_contig17969.4772.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17969.4772.1 vs. uniprot
Match: D8LRZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRZ0_ECTSI) HSP 1 Score: 179 bits (453), Expect = 1.680e-48 Identity = 86/128 (67.19%), Postives = 107/128 (83.59%), Query Frame = 1
Query: 1 RGQGHLLSNDFRKASKDLQRSVDLCTTMPISWAALGVALFKLGITHEQSFSSSVSECLEIMEDALERFPENSEVLLFFAEILVSMGNYARGLDLLKRSASLDPECPLPYVNAARAYLGMNDLVAARRQ 384
RGQGHLL+NDFRKA+ DL+RSV+LC TMPIS AA GVALFKL E SS+S+C++++E++ E FPEN EVL FFAE+L+SMG++ +GL+ L+ +ASLDPECP+PYVNAARAYLGMND AARRQ
Sbjct: 713 RGQGHLLANDFRKATADLRRSVELCPTMPISRAAWGVALFKLATAAELPSPSSLSKCVQVLEESRELFPENPEVLFFFAEVLISMGDFKKGLEFLQTAASLDPECPVPYVNAARAYLGMNDTKAARRQ 840
BLAST of mRNA_H-elongata_contig17969.4772.1 vs. uniprot
Match: A0A835YUV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV6_9STRA) HSP 1 Score: 134 bits (338), Expect = 5.500e-33 Identity = 83/246 (33.74%), Postives = 123/246 (50.00%), Query Frame = 1
Query: 1 RGQGHLLSNDFRKASKDLQRSVDLCTTMPISWAALGVALFKLGITHEQSFSSS-----------------------------------------VSECLEIMEDALERFPENSEVLLFFAEILVSMGNYARGLDLLKRSASLDPECPLPYVNAARAYLGMNDLVAARRQGHLEHGQALDSTYP----------GTFMDMGQLLMQEGFPAEAMSMYARGVEMARFPSEIHDAMACLDVAKCHLEAQ 585
RGQ HLL+N+ + AS DLQR+ ++ A+ G++LFK + S + + L I++DA P++ EV LF +E+L +G++A L LL +A+ DP CPLPYVNA RA+ GM DL +ARR HL + + P G ++D GQ+ + G EAM +Y +GV +R+ SE+HDA+ACL +A+ HLEA+
Sbjct: 823 RGQYHLLTNNPKAASFDLQRAAGFAEAPAVAQASYGISLFKRAAAPQGSLRRRTEVMRSPPINGALILITVAAARRRDARRRGLQLGMSQEPYRMDQALRILKDASWTHPDSVEVALFHSEVLTHLGDFAGALALLAAAAAKDPSCPLPYVNAGRAFTGMGDLPSARR--HLARAMQVRARAPSQEDVDPLCSGAYLDFGQVETRAGHVQEAMRLYEQGVHCSRYLSELHDALACLTIARTHLEAK 1066
BLAST of mRNA_H-elongata_contig17969.4772.1 vs. uniprot
Match: A0A7S2WSB2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSB2_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 8.810e-16 Identity = 59/185 (31.89%), Postives = 88/185 (47.57%), Query Frame = 1
Query: 100 ALGVALFKLGITHEQ--SFSSSVS-----ECLEIMEDALERFPENSEVLLFFAEILVSMGNYARGLDLLKRSASLDPE-------------CPLPYVNAARAYLGMNDLVAARRQGHLEHGQALDSTYPGTFMDMGQLLMQEGFPAEAMSMYARGVEMARFPSEIHDAMACLDVAKCHLEAQELL 594
+L VA FKL + + SVS + ++ A+ + P+ E+LL E++ G++ L+ +A E CPLPYVNA RAYL MN+ V A R HLE + +D +D+GQL +Q G A+ + +R E+HDAMAC VA H +A + +
Sbjct: 404 SLAVAYFKLDLLSGGGGALGFSVSSRFTFQMQRLLRKAVSKHPDQGELLLLHGELVAQGGDFLGALEKFAAAAQGSDEAEVGHVPTALPRGCPLPYVNAGRAYLQMNEPVLAER--HLERAKEVDPFCAACHLDLGQLWVQRGDVVRALESFKFARSYSRTFPELHDAMACEQVALAHQQALDAI 586
BLAST of mRNA_H-elongata_contig17969.4772.1 vs. uniprot
Match: A0A6S9M461_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9M461_HETAK) HSP 1 Score: 79.7 bits (195), Expect = 1.080e-14 Identity = 53/161 (32.92%), Postives = 79/161 (49.07%), Query Frame = 1
Query: 1 RGQGHLLSNDFRKASKDLQRSVDLCTTMP--------ISWAALGVALFKLGITHEQSFSSSVSECLEIMEDALERFPENSEVLLFFAEILVSMGNYARGLDLLKRSASLDPECPLPYVNAARAYLGMNDLVAARRQGHLEHGQALDSTYPGTFMDMGQLLM 459
R Q +L+ N+ R A+ DL+R P + A LG+A FK+ + L +E A P+N EVLLF+ E+L +G++ + L L +R+A + P CPLP+VNA RAYL +ND A ++D+GQLL+
Sbjct: 79 RAQLYLMKNENRLAANDLRRCEARHEAGPGGEEGVPALVRATLGIACFKMDMGSPLR--------LRQIERAHRLHPDNVEVLLFYGEMLTQVGDFKKALALFRRAAEVSPRCPLPFVNAGRAYLSLNDHAAXXXXXXXXXXXXXXXXX--AYLDLGQLLL 229
BLAST of mRNA_H-elongata_contig17969.4772.1 vs. uniprot
Match: A0A7S2CEM9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CEM9_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 3.840e-13 Identity = 39/99 (39.39%), Postives = 55/99 (55.56%), Query Frame = 1
Query: 292 SASLDPECPLPYVNAARAYLGMNDLVAARRQGHLEHGQALDSTYPGTFMDMGQLLMQEGFPAEAMSMYARGVEMARFPSEIHDAMACLDVAKCHLEAQE 588
+ +L CPLPYVNA RAYL MN+ V A HL H +D + +D+GQL +Q G +A+ + + +R E+HDA+AC VA H A +
Sbjct: 31 ATALPAGCPLPYVNAGRAYLQMNEPVLAEL--HLNHALEVDDSCAACHLDLGQLWLQRGDMEKALGHFECALSCSRSFPELHDALACRRVALAHQAAMD 127
BLAST of mRNA_H-elongata_contig17969.4772.1 vs. uniprot
Match: A0A7S2GV91_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GV91_9STRA) HSP 1 Score: 62.4 bits (150), Expect = 4.220e-9 Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 1
Query: 298 SLDPECPLPYVNAARAYLGMND---LVAARRQGHLEHGQALDSTYPGTFMDMGQLLMQEGFPAEAMSMYARGVEMARFPSEIHDAMACLDVAKCHLEAQELL 594
+L CPLP VNA RAY+ MN+ VA R LE +D T +D+GQL ++ G + A+S + +E +R E+HD+M C VA H A + L
Sbjct: 20 ALPRSCPLPQVNAGRAYMQMNESEHAVACFRAA-LE----MDPTCAAGLLDLGQLSLKRGETSSALSYFDSAIESSRSFPEMHDSMTCKRVALAHKRALDTL 116
BLAST of mRNA_H-elongata_contig17969.4772.1 vs. uniprot
Match: A0A4Y2B419_ARAVE (Mitochondrial import receptor subunit TOM70 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2B419_ARAVE) HSP 1 Score: 62.4 bits (150), Expect = 5.770e-8 Identity = 48/196 (24.49%), Postives = 85/196 (43.37%), Query Frame = 1
Query: 1 RGQGHLLSNDFRKASKDLQRSVDLCTTMPISWAALGVALFKLGITHEQSFSSSVSECLEIMEDALERFPENSEVLLFFAEILVSMGNYARGLDLLKRSASLDPECPLPYVNAARAYLGMNDLVAARRQGHLEHGQALDSTYPGTFMDMGQLLMQEGFPAEAMSMYARGVEMARFPSEIHDAMACLDVAKCHLEAQE 588
RGQ +LL F KD+++S L P + A ++ GI S + L+ E+ + FP SE L +A++L G Y + KR+ LD + P YV+ L + V + +L ++D + +G + +Q+G + ++ + V+ A +E+ + L AK +A E
Sbjct: 370 RGQVYLLMERFNDCLKDMEKSCSLNPNFPSARAQKCYIQYRCGIQFNDENQKSAA--LKGFEEIEKNFPNCSESLFLYAQVLSECGEYQKAETYFKRAGELDAKDPNVYVHLGILALQWKEDVNLAIE-YLNKAISMDEKCQFGYETLGSIEIQKGNLQRGLELFQKAVDAAHTETELAHLYSLLLAAKAQAKAAE 562
BLAST of mRNA_H-elongata_contig17969.4772.1 vs. uniprot
Match: A0A7X1P611_9PROT (PEP-CTERM system TPR-repeat protein PrsT n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A7X1P611_9PROT) HSP 1 Score: 55.1 bits (131), Expect = 1.990e-5 Identity = 49/184 (26.63%), Postives = 80/184 (43.48%), Query Frame = 1
Query: 4 GQGHLLSNDFRKASKDLQRSVDLCTTMPISWAALGVALFKLGITHEQSFSSSVSECLEIMEDALERFPENSEVLLFFAEILVSMGNYARGLDLLKRSASLDPECPLPYVNAARAYLGMNDLVAARRQGHLEHGQALDSTYPGTFMDMGQLLMQEGFPAEAMSMYARGVEMARFPSEIHDAMACL 555
G+ H+ ND+ +A K +++ L LG++ G ++ +E AL+ +++VLL + YA+ L + S P P+ Y A AY+G ND+ AARR LE AL Y +++ QL +QEG A A + + R + + A+A L
Sbjct: 383 GEVHMQLNDYERAKKFFEQAAALDPKNAAMRTGLGLSQLAAG-----DVDAATAELQSA--SALDGDRYHADVLLISTHL--QRRQYAQALKAARALESKQPSNPMTYNLLAAAYIGSNDIPAARRS--LEKSLALQPGYTPAALNLAQLDLQEGNKAAARKRFEDMIARDRSNVQAYIALASL 555 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17969.4772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17969.4772.1 >prot_H-elongata_contig17969.4772.1 ID=prot_H-elongata_contig17969.4772.1|Name=mRNA_H-elongata_contig17969.4772.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=198bp RGQGHLLSNDFRKASKDLQRSVDLCTTMPISWAALGVALFKLGITHEQSFback to top mRNA from alignment at H-elongata_contig17969:5193..6848- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17969.4772.1 ID=mRNA_H-elongata_contig17969.4772.1|Name=mRNA_H-elongata_contig17969.4772.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1656bp|location=Sequence derived from alignment at H-elongata_contig17969:5193..6848- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17969:5193..6848- >mRNA_H-elongata_contig17969.4772.1 ID=mRNA_H-elongata_contig17969.4772.1|Name=mRNA_H-elongata_contig17969.4772.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1188bp|location=Sequence derived from alignment at H-elongata_contig17969:5193..6848- (Himanthalia elongata Himel1 dioecious)back to top |