mRNA_H-elongata_contig179673.4770.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179673.4770.1
Unique NamemRNA_H-elongata_contig179673.4770.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig179673.4770.1 vs. uniprot
Match: A0A6H5KIQ7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ7_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 3.850e-40
Identity = 90/204 (44.12%), Postives = 116/204 (56.86%), Query Frame = 1 
Query:    1 DVNLARERYADILNASQRHVRCGKYCLRNGSCRFGFPQSLEETSRVEYHPLIRKPR-RPEDWQVRVIPA----RNDGH---------VNRHCILQLLGWGANVDASFIVDAGAARAYMVKYASKGETRSREAQEMLISAVEDASNLLEGAIALGGNTHDIPTVRSILRRVMLKAAAHRDMGVQECMHYLMQESCVDHNLEFVRI 570
            DV     RY +++NA  RH R G YCL NG CRFGFP+  +E+  +E HPL   P    +DWQ+   P     R +G          VNRH + QLLGWG+NVD S IVD G A  YMVKY +KGE+RSR+ Q  L + V  A+ L         +  D  T+ SI+R+V+  A   RDMGVQE  H  +Q   V HN+E+VR+
Sbjct:  271 DVGECERRYKNLVNACMRHTRHGGYCLVNGRCRFGFPKPRQESLGLEAHPLTTPPTDNVDDWQLIATPQNALPRREGEEGEGVFDPCVNRHVVAQLLGWGSNVDFSPIVDMGMAGRYMVKYTTKGESRSRDVQTTLATLVRHAATL-------DADDDDRLTLPSIMRKVLNMATTRRDMGVQEVQHLNLQTHNVLHNVEYVRV 467
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BLAST of mRNA_H-elongata_contig179673.4770.1 vs. uniprot
Match: A0A6H5KFJ0_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ0_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 4.110e-40
Identity = 90/204 (44.12%), Postives = 116/204 (56.86%), Query Frame = 1 
Query:    1 DVNLARERYADILNASQRHVRCGKYCLRNGSCRFGFPQSLEETSRVEYHPLIRKPR-RPEDWQVRVIPA----RNDGH---------VNRHCILQLLGWGANVDASFIVDAGAARAYMVKYASKGETRSREAQEMLISAVEDASNLLEGAIALGGNTHDIPTVRSILRRVMLKAAAHRDMGVQECMHYLMQESCVDHNLEFVRI 570
            DV     RY +++NA  RH R G YCL NG CRFGFP+  +E+  +E HPL   P    +DWQ+   P     R +G          VNRH + QLLGWG+NVD S IVD G A  YMVKY +KGE+RSR+ Q  L + V  A+ L         +  D  T+ SI+R+V+  A   RDMGVQE  H  +Q   V HN+E+VR+
Sbjct:  583 DVGECERRYKNLVNACMRHTRHGGYCLVNGRCRFGFPKPRQESLGLEAHPLTTPPTDNVDDWQLIATPQNALPRREGEEGEGVFDPCVNRHVVAQLLGWGSNVDFSPIVDMGMAGRYMVKYTTKGESRSRDVQTTLATLVRHAATL-------DADDDDRLTLPSIMRKVLNMATTRRDMGVQEVQHLNLQTHNVLHNVEYVRV 779
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BLAST of mRNA_H-elongata_contig179673.4770.1 vs. uniprot
Match: UPI000C71B89A (uncharacterized protein LOC106656353 n=1 Tax=Trichogramma pretiosum TaxID=7493 RepID=UPI000C71B89A)

HSP 1 Score: 85.5 bits (210), Expect = 5.220e-16
Identity = 55/194 (28.35%), Postives = 92/194 (47.42%), Query Frame = 1 
Query:   31 DILNASQRHVRCGKYCLRNGS----CRFGFPQSLEETSRVE----YHPLIRKPRRPEDWQVRVIPARNDGHVNRHCILQLLGWGANVDASFIVDAGAARAYMVKYASKGETRSREAQEMLISAVEDASNLLEGAIALGGNTHDIPTVRSILRRVMLKAAAHRDMGVQECMHYLMQESCVDHNLEFVRIDLDSES 588
            +++NA QRH +CG +C R G+    CRF FP+ ++E+S ++    YH                 P RND +V R   +    W AN D + I+D  A   Y+VKY +K ET S     ++ S  +              +++D+ + +S + ++++ +   RD   QE +H LM  S +     FV + L  E+
Sbjct:   52 ELINAFQRHTKCGTHCYRRGNANTHCRFKFPKDVQESSSIDDKHGYHEFF--------------PRRNDPYVQRFNNVVTQIWRANTDFTPILDINAVVKYIVKYTTKSETVSLSYMNVINSLCK--------------HSNDVSSAKSCVMKLIISSVCERDYSAQEVVHLLMGWSLMKSTRHFVSLILYEEN 217
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BLAST of mRNA_H-elongata_contig179673.4770.1 vs. uniprot
Match: A0A7J7NTS8_9MAGN (Helitron_like_N domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7NTS8_9MAGN)

HSP 1 Score: 77.0 bits (188), Expect = 5.800e-13
Identity = 54/182 (29.67%), Postives = 81/182 (44.51%), Query Frame = 1 
Query:    1 DVNLARERYADILNASQRHVRCGKYCLRNGS------CRFGFPQSLEETSRVEYHPLIRKPRRPEDWQVRVIPARNDGHVNRHCILQLLGWGANVDASFIVDAGAARAYMVKYASKGETRSREAQEMLISAVEDASNLLEGAIALGGNTHDIPTVRSILRRVMLKAAAHRDMGVQECMHYLM 528
            ++N+  + Y+ ++N   RH +C  YCLR         CRF +P  +   S +   P       P     R +  RND  V  H  + L  W AN+D S ++   A   Y+ KYA K E+ S    + L   VED     +             TVRS ++R+++K  + RD+  QE  H LM
Sbjct:  856 NMNIDDDDYSKLINWIMRHSKCESYCLRLHKTTKQLLCRFRYPFDVLPRSEIIEEP-------PNSNMFRFVGCRNDPLVCSHNRMVLQAWRANIDWSLVLSVQAVVNYIGKYAVKLESASIFFTDTLREIVEDLRRPCQ-------------TVRSAIKRLLMKTVSERDISAQEVCHLLM 1017
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179673.4770.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KIQ7_9PHAE3.850e-4044.12ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KFJ0_9PHAE4.110e-4044.12ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
UPI000C71B89A5.220e-1628.35uncharacterized protein LOC106656353 n=1 Tax=Trich... [more]
A0A7J7NTS8_9MAGN5.800e-1329.67Helitron_like_N domain-containing protein n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179673contigH-elongata_contig179673:186..773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score71.2
Seed ortholog evalue5.9e-10
Seed eggNOG ortholog5217.XP_007007387.1
EggNOG free text desc.Belongs to the helicase family
EggNOG OGs39JTG@33154,3Q45F@4751,COG0507@1,KOG0987@2759
COG Functional cat.L
Best tax levelFungi
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size588
Cds size588
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930036.658656-CDS-H-elongata_contig179673:185..7731622930036.658656-CDS-H-elongata_contig179673:185..773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179673 186..773 -
1691679256.318387-CDS-H-elongata_contig179673:185..7731691679256.318387-CDS-H-elongata_contig179673:185..773Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179673 186..773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179673.4770.1prot_H-elongata_contig179673.4770.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179673 186..773 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179673.4770.1

>prot_H-elongata_contig179673.4770.1 ID=prot_H-elongata_contig179673.4770.1|Name=mRNA_H-elongata_contig179673.4770.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=196bp
DVNLARERYADILNASQRHVRCGKYCLRNGSCRFGFPQSLEETSRVEYHP
LIRKPRRPEDWQVRVIPARNDGHVNRHCILQLLGWGANVDASFIVDAGAA
RAYMVKYASKGETRSREAQEMLISAVEDASNLLEGAIALGGNTHDIPTVR
SILRRVMLKAAAHRDMGVQECMHYLMQESCVDHNLEFVRIDLDSES
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mRNA from alignment at H-elongata_contig179673:186..773-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179673.4770.1 ID=mRNA_H-elongata_contig179673.4770.1|Name=mRNA_H-elongata_contig179673.4770.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=588bp|location=Sequence derived from alignment at H-elongata_contig179673:186..773- (Himanthalia elongata Himel1 dioecious)
GACGTCAACCTCGCACGGGAGCGTTATGCAGATATTTTGAACGCTTCACA
ACGACACGTTCGATGTGGGAAATATTGTTTGCGAAACGGGTCGTGTAGGT
TTGGGTTTCCGCAGTCTCTGGAAGAGACTTCAAGAGTGGAGTACCATCCC
CTCATCCGTAAACCAAGGAGGCCGGAGGATTGGCAAGTGCGGGTCATACC
TGCGCGTAATGACGGTCATGTCAATCGTCATTGTATTTTACAGCTTCTGG
GGTGGGGTGCTAATGTTGATGCTTCTTTCATAGTTGACGCTGGCGCGGCT
AGGGCGTACATGGTAAAATATGCCTCGAAGGGAGAGACAAGATCTAGAGA
GGCCCAAGAAATGTTAATCTCTGCCGTGGAAGACGCTTCTAACTTACTTG
AAGGAGCTATCGCTTTAGGTGGCAACACCCACGATATTCCGACAGTTCGG
AGTATATTACGGAGAGTCATGCTTAAGGCTGCCGCGCATCGAGACATGGG
AGTACAGGAGTGTATGCATTATCTCATGCAGGAATCTTGTGTTGATCACA
ATCTAGAGTTCGTGAGGATTGACCTTGACTCGGAAAGC
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Coding sequence (CDS) from alignment at H-elongata_contig179673:186..773-

>mRNA_H-elongata_contig179673.4770.1 ID=mRNA_H-elongata_contig179673.4770.1|Name=mRNA_H-elongata_contig179673.4770.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1176bp|location=Sequence derived from alignment at H-elongata_contig179673:186..773- (Himanthalia elongata Himel1 dioecious)
GACGTCAACCTCGCACGGGAGCGTTATGCAGATATTTTGAACGCTTCACA
ACGACACGTTCGATGTGGGAAATATTGTTTGCGAAACGGGTCGTGTAGGT
TTGGGTTTCCGCAGTCTCTGGAAGAGACTTCAAGAGTGGAGTACCATCCC
CTCATCCGTAAACCAAGGAGGCCGGAGGATTGGCAAGTGCGGGTCATACC
TGCGCGTAATGACGGTCATGTCAATCGTCATTGTATTTTACAGCTTCTGG
GGTGGGGTGCTAATGTTGATGCTTCTTTCATAGTTGACGCTGGCGCGGCT
AGGGCGTACATGGTAAAATATGCCTCGAAGGGAGAGACAAGATCTAGAGA
GGCCCAAGAAATGTTAATCTCTGCCGTGGAAGACGCTTCTAACTTACTTG
AAGGAGCTATCGCTTTAGGTGGCAACACCCACGATATTCCGACAGTTCGG
AGTATATTACGGAGAGTCATGCTTAAGGCTGCCGCGCATCGAGACATGGG
AGTACAGGAGTGTATGCATTATCTCATGCAGGAATCTTGTGTTGATCACA
ATCTAGAGTTCGTGAGGATTGACCTTGACTCGGAAAGCGACGTCAACCTC
GCACGGGAGCGTTATGCAGATATTTTGAACGCTTCACAACGACACGTTCG
ATGTGGGAAATATTGTTTGCGAAACGGGTCGTGTAGGTTTGGGTTTCCGC
AGTCTCTGGAAGAGACTTCAAGAGTGGAGTACCATCCCCTCATCCGTAAA
CCAAGGAGGCCGGAGGATTGGCAAGTGCGGGTCATACCTGCGCGTAATGA
CGGTCATGTCAATCGTCATTGTATTTTACAGCTTCTGGGGTGGGGTGCTA
ATGTTGATGCTTCTTTCATAGTTGACGCTGGCGCGGCTAGGGCGTACATG
GTAAAATATGCCTCGAAGGGAGAGACAAGATCTAGAGAGGCCCAAGAAAT
GTTAATCTCTGCCGTGGAAGACGCTTCTAACTTACTTGAAGGAGCTATCG
CTTTAGGTGGCAACACCCACGATATTCCGACAGTTCGGAGTATATTACGG
AGAGTCATGCTTAAGGCTGCCGCGCATCGAGACATGGGAGTACAGGAGTG
TATGCATTATCTCATGCAGGAATCTTGTGTTGATCACAATCTAGAGTTCG
TGAGGATTGACCTTGACTCGGAAAGC
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