mRNA_H-elongata_contig179656.4768.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179656.4768.1
Unique NamemRNA_H-elongata_contig179656.4768.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig179656.4768.1 vs. uniprot
Match: D7FKX3_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKX3_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 2.520e-28
Identity = 58/108 (53.70%), Postives = 78/108 (72.22%), Query Frame = 1 
Query:   34 MSSSNEGRIHIINALFSTVKIPDALFR----DLDMAGARPCSLLLQRAIRHQQDHEWERCEEVAFKAREFAWEQLHSGSSWQAVAQVHRDAYGMAGLLLAAAMFLTDD 345
            M S  E R  +I+ L S  +I  ALF+    +L+  G+RPCSLL+QRAI+H ++  W RC EVA KARE+AWEQLHSG SWQ VA+VHRDAYG++G L+A A +++ +
Sbjct:   11 MESDTEKRSRVIDELLSDRQISTALFQCIALELEEVGSRPCSLLVQRAIQHLEEGRWTRCHEVALKAREYAWEQLHSGKSWQTVAKVHRDAYGVSGTLVAIATYISGE 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179656.4768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKX3_ECTSI2.520e-2853.70JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179656contigH-elongata_contig179656:193..1161 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue2.6e-25
Seed eggNOG ortholog2880.D7FKX3
KEGG rclassRC00002
KEGG koko:K01001,ko:K10277,ko:K17970
KEGG ReactionR05969
KEGG Pathwayko00510,ko01100,map00510,map01100
KEGG ModuleM00055
GOsGO:0000086,GO:0000278,GO:0003674,GO:0003682,GO:0003700,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006464,GO:0006479,GO:0006482,GO:0006807,GO:0006996,GO:0007049,GO:0007623,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008214,GO:0008276,GO:0008757,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010452,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016278,GO:0016279,GO:0016491,GO:0016569,GO:0016570,GO:0016571,GO:0016577,GO:0016705,GO:0016706,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0022402,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032451,GO:0032452,GO:0034968,GO:0036211,GO:0042054,GO:0042752,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044839,GO:0045893,GO:0045935,GO:0046975,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051213,GO:0051252,GO:0051254,GO:0051276,GO:0051864,GO:0055114,GO:0060255,GO:0065007,GO:0070013,GO:0070076,GO:0070544,GO:0070988,GO:0071704,GO:0071840,GO:0080090,GO:0140096,GO:0140110,GO:1901564,GO:1902680,GO:1903047,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.tRNAPhe (7-(3-amino-3-carboxypropyl)wyosine37-C2)-hydroxylase activity
EggNOG OGsKOG2132@1,KOG2132@2759
EC1.14.11.27,2.7.8.15
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03029,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size347
Cds size312
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179656.4768.1prot_H-elongata_contig179656.4768.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179656 226..1161 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930036.5367298-UTR-H-elongata_contig179656:192..2251622930036.5367298-UTR-H-elongata_contig179656:192..225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig179656 193..225 +
1691679256.2776055-UTR-H-elongata_contig179656:192..2251691679256.2776055-UTR-H-elongata_contig179656:192..225Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig179656 193..225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930036.5520098-CDS-H-elongata_contig179656:225..4431622930036.5520098-CDS-H-elongata_contig179656:225..443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179656 226..443 +
1691679256.2871377-CDS-H-elongata_contig179656:225..4431691679256.2871377-CDS-H-elongata_contig179656:225..443Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179656 226..443 +
1622930036.5674314-CDS-H-elongata_contig179656:1067..11611622930036.5674314-CDS-H-elongata_contig179656:1067..1161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179656 1068..1161 +
1691679256.2942665-CDS-H-elongata_contig179656:1067..11611691679256.2942665-CDS-H-elongata_contig179656:1067..1161Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179656 1068..1161 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179656.4768.1

>prot_H-elongata_contig179656.4768.1 ID=prot_H-elongata_contig179656.4768.1|Name=mRNA_H-elongata_contig179656.4768.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MSSSNEGRIHIINALFSTVKIPDALFRDLDMAGARPCSLLLQRAIRHQQD
HEWERCEEVAFKAREFAWEQLHSGSSWQAVAQVHRDAYGMAGLLLAAAMF
LTDD
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mRNA from alignment at H-elongata_contig179656:193..1161+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179656.4768.1 ID=mRNA_H-elongata_contig179656.4768.1|Name=mRNA_H-elongata_contig179656.4768.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=969bp|location=Sequence derived from alignment at H-elongata_contig179656:193..1161+ (Himanthalia elongata Himel1 dioecious)
AGGCTTCGTCGTCTCAATACCTCGTTTTGAGATATGTCGAGCAGCAATGA
GGGAAGGATTCACATTATAAACGCACTATTTTCAACGGTGAAAATCCCTG
ATGCGCTCTTCCGAGATCTTGACATGGCGGGCGCTAGGCCATGCTCTCTG
CTCTTGCAGAGAGCGATTCGACACCAACAAGATCATGAGTGGGAGCGCTG
CGAGGAGGTCGCCTTCAAAGCCCGAGAATTTGCGTGGGAACAACTGCATA
GGTGTAAAATATGTTGCAAGATGCGGGAGATAGTGCATGCCAATTCTTCG
GCTGCAAATGCAGGATCATGAGCTTAGACCGCAAAGTGCCGGAACCGACG
TTTAAGGCATCAGTTCCGCCGCAATTGTGTTCGGAGTTCGAAGCCCAAAT
TCGTCCCTTGTTGGATTGAGACCGCCAGAAGCGGTCCGCATCCTTTCGAG
TATTTCCAGGCTGTGCATAACGTACATATTTGTGCCGATGGGGCAGAATA
TAGCACATAGCCCCGTGCATGGAGCGCATGCAGTAAAATTGGTATGTGTA
GGCTCTATGCGATCCACACACGTTGTTACTGGTAGGAACAAACAAGGTAA
TTGTCCTCTAATAGAAGCATATAAAATATTAGAAGTTAGCTAGAGTATAC
AGCATATTAATACCGGTGGTAGTAGGTTAGTGTAATGGACAGAAAAATGA
CGTGGGGAGCGAGCTTCTTCCCGTCGATGACTGTCTGCGATCCTGGTATG
GGTACGTAAACGCATTATCATGGAGCGGTAAGTTTGCATTGGACAAATAC
TATTCCAAAACGCACCCGGATAATTATGACATTAATCCTTTGTCATCTCG
GGTTTCCCTCAAATCCCTGACTCAGCGGCTCATCTTGGCAAGCTGTAGCG
CAAGTTCATCGGGATGCTTACGGGATGGCCGGACTTTTACTCGCCGCGGC
GATGTTTCTCACGGACGAC
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Coding sequence (CDS) from alignment at H-elongata_contig179656:193..1161+

>mRNA_H-elongata_contig179656.4768.1 ID=mRNA_H-elongata_contig179656.4768.1|Name=mRNA_H-elongata_contig179656.4768.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig179656:193..1161+ (Himanthalia elongata Himel1 dioecious)
ATGTCGAGCAGCAATGAGGGAAGGATTCACATTATAAACGCACTATTTTC
AACGGTGAAAATCCCTGATGCGCTCTTCCGAGATCTTGACATGGCGGGCG
CTAGGCCATGCTCTCTGCTCTTGCAGAGAGCGATTCGACACCAACAAGAT
CATGAGTGGGAGCGCTGCGAGGAGGTCGCCTTCAAAGCCCGAGAATTTGC
GTGGGAACAACTGCATAGATGTCGAGCAGCAATGAGGGAAGGATTCACAT
TATAAACGCACTATTTTCAACGGTGAAAATCCCTGATGCGCTCTTCCGAG
ATCTTGACATGGCGGGCGCTAGGCCATGCTCTCTGCTCTTGCAGAGAGCG
ATTCGACACCAACAAGATCATGAGTGGGAGCGCTGCGAGGAGGTCGCCTT
CAAAGCCCGAGAATTTGCGTGGGAACAACTGCATAGCGGCTCATCTTGGC
AAGCTGTAGCGCAAGTTCATCGGGATGCTTACGGGATGGCCGGACTTTTA
CTCGCCGCGGCGATGTTTCTCACGGACGACCGGCTCATCTTGGCAAGCTG
TAGCGCAAGTTCATCGGGATGCTTACGGGATGGCCGGACTTTTACTCGCC
GCGGCGATGTTTCTCACGGACGAC
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