mRNA_H-elongata_contig179579.4763.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179579.4763.1
Unique NamemRNA_H-elongata_contig179579.4763.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig179579.4763.1 vs. uniprot
Match: A0A6G0W780_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W780_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.020e-21
Identity = 61/170 (35.88%), Postives = 89/170 (52.35%), Query Frame = 1
Query:   13 QHQYIKTVAERFGVTKTSIIPS-VAGEKALSKSDSPRMDAEVEEMRQIPYRKIVGALMWAVTMTRPDISFA--------------------NALQYLWRTRDLGIIYGGEPGEAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYVAL 459
            Q +Y +TV ERF +  ++ + +     K LSKS       ++  M   PYR +VG+LM+    TRPD++F                      AL+YL  TR  G++ GG        LSA+VDADY  CPDTRR VSG  ++  G  ISW ++ Q +   +++E+E+VAL
Sbjct: 1726 QTRYCETVVERFDMASSNPVHTPFESSKTLSKSQCATTPEDISFMASKPYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLDNPDPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLAKKQNIVTLSTTEAEFVAL 1895          
BLAST of mRNA_H-elongata_contig179579.4763.1 vs. uniprot
Match: A0A146HBL6_MYCCL (Uncharacterized protein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146HBL6_MYCCL)

HSP 1 Score: 95.5 bits (236), Expect = 6.480e-21
Identity = 61/174 (35.06%), Postives = 97/174 (55.75%), Query Frame = 1
Query:    1 MTFDQHQYIKTVAERFGVTKTSIIP-SVAGEKALSKSDSPRMDAEVEEMRQIPYRKIVGALMWAVTMTRPDISFANA--------------------LQYLWRTRDLGIIYGGEPGEAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYVAL 459
            +T  Q  Y+  + E+FG+T    I   +A ++ LS    P  DA   +M+++PYR+++GAL+W  T TRPD++F  A                    LQYL  TR LG+ +GG   + G  L+ + DAD G   + R+++SG    + G AISW SR Q++TA + +E+EY+++
Sbjct:   12 LTLTQSTYVDALMEKFGMTDAKPISVPLAPDQNLSVEQCPTDDATKLQMKKLPYRELIGALVWLSTATRPDLAFTVAVLSRFVSNPGRAHWDAAKRTLQYLKGTRTLGLTFGGSETKFG--LNIFADAD-GMSMENRKAISGYVFTLNGAAISWSSRQQEITALSMTEAEYISI 182          
BLAST of mRNA_H-elongata_contig179579.4763.1 vs. uniprot
Match: A0A7S0RGU7_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RGU7_9CHLO)

HSP 1 Score: 97.8 bits (242), Expect = 9.340e-21
Identity = 63/170 (37.06%), Postives = 93/170 (54.71%), Query Frame = 1
Query:   13 QHQYIKTVAERFGVT--KTSIIPSVAGEKALSKSDSPRMDAEVEEMRQIPYRKIVGALMWAVTMTRPDISFA--------------------NALQYLWRTRDLGIIYGGEPGEAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYVA 456
            Q +YIK V  RFG+   K + +P   G    S +D+P+ + E  EMR +PYR +VG+L++    TRPDI+ A                    + L+YL  T +LGI Y    GE    L+A+ DAD+G CPDT +S SG    +  G +SW S++Q+  A +++E+EY A
Sbjct: 1201 QTKYIKDVLARFGMQDCKPASVPLDPG-SVFSTADAPQSEGERAEMRGLPYRGLVGSLLYCAVATRPDIAVAVSKISHVMSNPGPTHYRRALHVLRYLKGTMELGIRY--SKGEVNNVLTAYSDADHGGCPDTGKSHSGYVCFLNNGPVSWMSKLQQPVAVSTTEAEYYA 1367          
BLAST of mRNA_H-elongata_contig179579.4763.1 vs. uniprot
Match: A0A146H327_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H327_MYCCL)

HSP 1 Score: 97.4 bits (241), Expect = 1.080e-20
Identity = 60/174 (34.48%), Postives = 96/174 (55.17%), Query Frame = 1
Query:    1 MTFDQHQYIKTVAERFGVTKTSIIP-SVAGEKALSKSDSPRMDAEVEEMRQIPYRKIVGALMWAVTMTRPDISFA--------------------NALQYLWRTRDLGIIYGGEPGEAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYVAL 459
            +T  Q  YI  + E+FG+T T  +   +     LS    P  D E ++M+++PYR+++G L+W  T TRPD++F+                      LQYL  TR LG+ YGG   + G  L+ + DAD G   + R++VSG    + GG++SW S+ Q +TA +++E+EY++L
Sbjct:  294 LTLTQSTYIDALIEKFGMTNTKPLSVPLDPNHQLSIDQCPTSDIEKQDMKKVPYRELIGGLVWLWTATRPDLAFSVTILSRFVSNPGRPHWDAAKRVLQYLKGTRTLGLTYGGSAEQLG--LNIFADAD-GMSIEDRKAVSGYVFTLNGGSVSWSSKQQAITALSTTEAEYISL 464          
BLAST of mRNA_H-elongata_contig179579.4763.1 vs. uniprot
Match: A0A6G0W6P6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6P6_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 1.650e-20
Identity = 60/170 (35.29%), Postives = 88/170 (51.76%), Query Frame = 1
Query:   13 QHQYIKTVAERFGVTKTSIIPS-VAGEKALSKSDSPRMDAEVEEMRQIPYRKIVGALMWAVTMTRPDISFA--------------------NALQYLWRTRDLGIIYGGEPGEAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYVAL 459
            Q +Y +TV ERF +  ++ + +     K LSKS       ++  M   PYR +VG+ M+    TRPD++F                      AL+YL  TR  G++ GG        LSA+VDADY  CPDTRR VSG  ++  G  ISW ++ Q +   +++E+E+VAL
Sbjct:  582 QTRYCETVVERFDMASSNPVHTPFESSKTLSKSQCATTPEDISFMASKPYRSLVGSPMYLAMGTRPDLAFPLQQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSGYVLLFLGSPISWLTKKQNIVTLSTTEAEFVAL 751          
BLAST of mRNA_H-elongata_contig179579.4763.1 vs. uniprot
Match: A0A438CFA8_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CFA8_VITVI)

HSP 1 Score: 97.1 bits (240), Expect = 1.720e-20
Identity = 61/155 (39.35%), Postives = 93/155 (60.00%), Query Frame = 1
Query:    1 MTFDQHQYIKTVAERFGV--TKTSIIPSVAGEKALSKSDSPRMDAEVEEMRQIPYRKIVGALMWAVTMTRPDISFANALQYLWRTRDLGIIYGGEPGEAGTKLSAWV-DADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYVA 456
            +   Q  YI+ + +RF +   K++  P V G+K  SK+  P+ D E EEM+ IPY  +VG+LM+A   TRPDI+F   +   + +       G +  +A  K+ +WV DAD+  C D ++S +G   MMAGGA+SW S  Q +TA+++ E+EYVA
Sbjct: 1035 LKLSQRAYIEKILKRFNMHNCKSTKAPIVKGDK-FSKAQCPQNDDEREEMKTIPYSSVVGSLMYAQVCTRPDIAFVVGMLGRYLSNP-----GSQHWKAAKKVLSWVCDADFAGCIDDKKSTTGYIFMMAGGAVSWKSVKQTLTASSTMEAEYVA 1183          
BLAST of mRNA_H-elongata_contig179579.4763.1 vs. uniprot
Match: W2WEK3_PHYPR (Integrase catalytic domain-containing protein n=1 Tax=Phytophthora parasitica CJ01A1 TaxID=1317063 RepID=W2WEK3_PHYPR)

HSP 1 Score: 96.3 bits (238), Expect = 3.170e-20
Identity = 63/171 (36.84%), Postives = 96/171 (56.14%), Query Frame = 1
Query:   13 QHQYIKTVAERFGVTKTSII--PSVAGEKALSKSDSPRMDAEVEEMRQIPYRKIVGALMWAVTMTRPDISFA--------------------NALQYLWRTRDLGIIYGGEPGEAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYVAL 459
            Q +YI  V ERF      ++  P  +G K L+ + SP   AE  EM++  YR ++G L++  T TRPD+++                       L+YL  TR+LGI+Y G    +G KL+A+ DAD+G+ PD RRSVSG  V ++G  + + S+ Q+  A +S+E+EY+AL
Sbjct:  953 QTRYIDDVVERFKQKDAKVVVNPCESGLK-LTSAQSPTAQAERMEMQRKLYRALIGCLLYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKGTRELGIVYSGT--SSGVKLTAYTDADWGSNPDDRRSVSGTMVTISGAPVIFKSKYQRTVALSSAEAEYMAL 1120          
BLAST of mRNA_H-elongata_contig179579.4763.1 vs. uniprot
Match: A0A2N9IDU9_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IDU9_FAGSY)

HSP 1 Score: 95.5 bits (236), Expect = 5.450e-20
Identity = 67/170 (39.41%), Postives = 90/170 (52.94%), Query Frame = 1
Query:   13 QHQYIKTVAERFGVTKTSI--IPSVAGEKALSKSDSPRMDAEVEEMRQIPYRKIVGALMWAVTMTRPDISFA--------------------NALQYLWRTRDLGIIYGGEPGEAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYVA 456
            Q  YI  V ERF ++  S    P V G+K LSK   P+ D E  EM++IPY   VG+LM+A   TRPDI+FA                      L+YL RT+D  + Y         ++  + DADY  C D  +S SG   M+AGGAISW S  Q +TA+++ ++EYVA
Sbjct:  422 QKSYINRVLERFNMSTCSAGDAPVVKGDK-LSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYRRSDL---LEVIGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTASSTMQAEYVA 587          
BLAST of mRNA_H-elongata_contig179579.4763.1 vs. uniprot
Match: A0A4S4L7S0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4L7S0_9AGAM)

HSP 1 Score: 93.6 bits (231), Expect = 5.710e-20
Identity = 59/172 (34.30%), Postives = 93/172 (54.07%), Query Frame = 1
Query:    1 MTFDQHQYIKTVAERFGVTK-TSIIPSVAGEKALSKSDSPRMDAEVEEMRQIPYRKIVGALMWAVTMTRPDISFA--------------------NALQYLWRTRDLGIIYGGEPGEAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYV 453
            ++  Q QYI  + ERF ++  T++   +     LSK+ +P+   E+  M+ +PYR++VGALM+    TRPDIS+A                    +  +YL  T+D+ + Y  +P  A    + + DAD+G   D RRS SG  V M  GAISW SR+Q +   +++E+EY+
Sbjct:   47 LSLSQRQYIIDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDP-HAPELFTTFSDADHGGDEDNRRSTSGMVVKMGTGAISWASRLQTIVTLSTTEAEYI 217          
BLAST of mRNA_H-elongata_contig179579.4763.1 vs. uniprot
Match: A0A2N9HDZ1_FAGSY (RNase H type-1 domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HDZ1_FAGSY)

HSP 1 Score: 95.5 bits (236), Expect = 6.000e-20
Identity = 67/170 (39.41%), Postives = 90/170 (52.94%), Query Frame = 1
Query:   13 QHQYIKTVAERFGVTKTSI--IPSVAGEKALSKSDSPRMDAEVEEMRQIPYRKIVGALMWAVTMTRPDISFA--------------------NALQYLWRTRDLGIIYGGEPGEAGTKLSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEYVA 456
            Q  YI  V ERF ++  S    P V G+K LSK   P+ D E  EM++IPY   VG+LM+A   TRPDI+FA                      L+YL RT+D  + Y         ++  + DADY  C D  +S SG   M+AGGAISW S  Q +TA+++ ++EYVA
Sbjct:  730 QKSYISRVLERFNMSTCSAGDAPVVKGDK-LSKLQCPQNDLERNEMKKIPYASAVGSLMYAQVCTRPDIAFAISVLGRFQSDPGMDHWRAAKKVLRYLQRTKDFMLTYRRSDL---LEVIGYADADYAGCADDLKSTSGYVFMLAGGAISWKSVKQTLTASSTMQAEYVA 895          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179579.4763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G0W780_9STRA2.020e-2135.88Integrase catalytic domain-containing protein n=3 ... [more]
A0A146HBL6_MYCCL6.480e-2135.06Uncharacterized protein n=1 Tax=Mycena chlorophos ... [more]
A0A7S0RGU7_9CHLO9.340e-2137.06Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A146H327_MYCCL1.080e-2034.48Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473... [more]
A0A6G0W6P6_9STRA1.650e-2035.29Integrase catalytic domain-containing protein n=1 ... [more]
A0A438CFA8_VITVI1.720e-2039.35Retrovirus-related Pol polyprotein from transposon... [more]
W2WEK3_PHYPR3.170e-2036.84Integrase catalytic domain-containing protein n=1 ... [more]
A0A2N9IDU9_FAGSY5.450e-2039.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A4S4L7S0_9AGAM5.710e-2034.30Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9HDZ1_FAGSY6.000e-2039.41RNase H type-1 domain-containing protein n=1 Tax=F... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179579contigH-elongata_contig179579:10..528 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue1.2e-18
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size459
Cds size459
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930036.1006558-CDS-H-elongata_contig179579:9..2461622930036.1006558-CDS-H-elongata_contig179579:9..246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179579 10..246 -
1691679256.0994306-CDS-H-elongata_contig179579:9..2461691679256.0994306-CDS-H-elongata_contig179579:9..246Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179579 10..246 -
1622930036.1159434-CDS-H-elongata_contig179579:306..5281622930036.1159434-CDS-H-elongata_contig179579:306..528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179579 307..528 -
1691679256.1089528-CDS-H-elongata_contig179579:306..5281691679256.1089528-CDS-H-elongata_contig179579:306..528Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179579 307..528 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179579.4763.1prot_H-elongata_contig179579.4763.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179579 10..528 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179579.4763.1

>prot_H-elongata_contig179579.4763.1 ID=prot_H-elongata_contig179579.4763.1|Name=mRNA_H-elongata_contig179579.4763.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=153bp
MTFDQHQYIKTVAERFGVTKTSIIPSVAGEKALSKSDSPRMDAEVEEMRQ
IPYRKIVGALMWAVTMTRPDISFANALQYLWRTRDLGIIYGGEPGEAGTK
LSAWVDADYGTCPDTRRSVSGGAVMMAGGAISWFSRVQKVTAAASSESEY
VAL
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mRNA from alignment at H-elongata_contig179579:10..528-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179579.4763.1 ID=mRNA_H-elongata_contig179579.4763.1|Name=mRNA_H-elongata_contig179579.4763.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=519bp|location=Sequence derived from alignment at H-elongata_contig179579:10..528- (Himanthalia elongata Himel1 dioecious)
ATGACGTTCGATCAGCATCAGTATATAAAAACTGTGGCGGAACGTTTTGG CGTGACGAAGACCAGCATCATCCCGTCCGTGGCAGGAGAAAAAGCCCTTT CAAAATCAGACAGCCCGCGAATGGACGCCGAGGTTGAAGAAATGCGCCAG ATTCCCTACCGAAAAATCGTTGGGGCCCTAATGTGGGCAGTGACGATGAC CAGGCCCGACATTTCATTCGCTGTGCACCAACTGGTGAAATTCAACGACA ACCCGGGACCGACACACTAGAGGGCAGCCCAGAATGCGCTGCAATATTTA TGGCGCACTCGGGACCTCGGGATCATCTACGGAGGGGAACCGGGGGAGGC AGGGACCAAGTTATCAGCGTGGGTCGACGCAGACTACGGCACCTGCCCGG ACACGCGTCGCTCAGTGTCTGGGGGGGCAGTGATGATGGCTGGCGGGGCC ATTAGTTGGTTCTCACGAGTGCAAAAGGTAACGGCGGCGGCGTCGTCCGA ATCGGAATACGTCGCGCTG
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Coding sequence (CDS) from alignment at H-elongata_contig179579:10..528-

>mRNA_H-elongata_contig179579.4763.1 ID=mRNA_H-elongata_contig179579.4763.1|Name=mRNA_H-elongata_contig179579.4763.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=918bp|location=Sequence derived from alignment at H-elongata_contig179579:10..528- (Himanthalia elongata Himel1 dioecious)
ATGACGTTCGATCAGCATCAGTATATAAAAACTGTGGCGGAACGTTTTGG
CGTGACGAAGACCAGCATCATCCCGTCCGTGGCAGGAGAAAAAGCCCTTT
CAAAATCAGACAGCCCGCGAATGGACGCCGAGGTTGAAGAAATGCGCCAG
ATTCCCTACCGAAAAATCGTTGGGGCCCTAATGTGGGCAGTGACGATGAC
CAGGCCCGACATTTCATTCGCTATGACGTTCGATCAGCATCAGTATATAA
AAACTGTGGCGGAACGTTTTGGCGTGACGAAGACCAGCATCATCCCGTCC
GTGGCAGGAGAAAAAGCCCTTTCAAAATCAGACAGCCCGCGAATGGACGC
CGAGGTTGAAGAAATGCGCCAGATTCCCTACCGAAAAATCGTTGGGGCCC
TAATGTGGGCAGTGACGATGACCAGGCCCGACATTTCATTCGCTAATGCG
CTGCAATATTTATGGCGCACTCGGGACCTCGGGATCATCTACGGAGGGGA
ACCGGGGGAGGCAGGGACCAAGTTATCAGCGTGGGTCGACGCAGACTACG
GCACCTGCCCGGACACGCGTCGCTCAGTGTCTGGGGGGGCAGTGATGATG
GCTGGCGGGGCCATTAGTTGGTTCTCACGAGTGCAAAAGGTAACGGCGGC
GGCGTCGTCCGAATCGGAATACGTCGCGCTGAATGCGCTGCAATATTTAT
GGCGCACTCGGGACCTCGGGATCATCTACGGAGGGGAACCGGGGGAGGCA
GGGACCAAGTTATCAGCGTGGGTCGACGCAGACTACGGCACCTGCCCGGA
CACGCGTCGCTCAGTGTCTGGGGGGGCAGTGATGATGGCTGGCGGGGCCA
TTAGTTGGTTCTCACGAGTGCAAAAGGTAACGGCGGCGGCGTCGTCCGAA
TCGGAATACGTCGCGCTG
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