mRNA_H-elongata_contig17957.4762.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17957.4762.1
Unique NamemRNA_H-elongata_contig17957.4762.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17957.4762.1 vs. uniprot
Match: A0A7S4KEG3_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KEG3_9EUKA)

HSP 1 Score: 56.6 bits (135), Expect = 8.560e-8
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1
Query:   28 VIRLQQDVVTGLGFIHRCGIVHMDLKLENVFLKH-RQNGSYTPVIGDFGLA 177
            ++ L  D+V GL ++H  GI+H DLK +N+FL   +Q GSYT VIGDF  A
Sbjct:  222 IVSLFSDLVDGLEYLHSHGIMHRDLKSDNIFLNFGKQGGSYTAVIGDFDTA 272          
BLAST of mRNA_H-elongata_contig17957.4762.1 vs. uniprot
Match: A0A8J8L0W4_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Geothrix sp. TaxID=1962974 RepID=A0A8J8L0W4_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 1.640e-7
Identity = 20/50 (40.00%), Postives = 34/50 (68.00%), Query Frame = 1
Query:   34 RLQQDVVTGLGFIHRCGIVHMDLKLENVFLKHRQNGSYTPVIGDFGLADG 183
            R+ +D+  G+   H+ G++H+DLKL NV ++  ++G + PVI DFG+  G
Sbjct:  184 RIIRDIAQGIHVAHQKGLIHLDLKLNNVLMERHEDGIFHPVISDFGMVSG 233          
BLAST of mRNA_H-elongata_contig17957.4762.1 vs. uniprot
Match: A0A4S5BVT4_9ACTN (Non-specific serine/threonine protein kinase (Fragment) n=2 Tax=Candidatus Frankia alpina TaxID=2699483 RepID=A0A4S5BVT4_9ACTN)

HSP 1 Score: 54.7 bits (130), Expect = 3.020e-7
Identity = 25/44 (56.82%), Postives = 30/44 (68.18%), Query Frame = 1
Query:   46 DVVTGLGFIHRCGIVHMDLKLENVFLKHRQNGSYTPVIGDFGLA 177
            D++TGLG  H  GI+H DLK ENV L  R +G Y P I DFG+A
Sbjct:  114 DILTGLGAAHELGIIHHDLKPENVLLD-RHDGGYQPKISDFGIA 156          
BLAST of mRNA_H-elongata_contig17957.4762.1 vs. uniprot
Match: A0A058ZDG5_FONAL (Serine/threonine protein kinase n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZDG5_FONAL)

HSP 1 Score: 55.1 bits (131), Expect = 3.100e-7
Identity = 26/61 (42.62%), Postives = 35/61 (57.38%), Query Frame = 1
Query:    1 WLHRCIIYAVIRLQQDVVTGLGFIHRCGIVHMDLKLENVFLKH--RQNGSYTPVIGDFGLA 177
            W  R      +++  D+  G+ FIH  G+VH DLK EN+FL+      G   PVIGDFG+A
Sbjct: 2537 WPSRLSPAQTLQMAADIAAGMAFIHSRGVVHKDLKPENIFLRPDPADPGRLQPVIGDFGVA 2597          
BLAST of mRNA_H-elongata_contig17957.4762.1 vs. uniprot
Match: A0A058ZAU8_FONAL (Serine/threonine protein kinase n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZAU8_FONAL)

HSP 1 Score: 55.1 bits (131), Expect = 3.100e-7
Identity = 27/61 (44.26%), Postives = 35/61 (57.38%), Query Frame = 1
Query:    1 WLHRCIIYAVIRLQQDVVTGLGFIHRCGIVHMDLKLENVFLKH--RQNGSYTPVIGDFGLA 177
            W  R      +++  D+  GL FIH  G+VH DLK EN+FL+      G   PVIGDFG+A
Sbjct: 2706 WPSRLGPVQTLQMAADIAAGLAFIHSRGVVHKDLKPENIFLRPDPAAPGRLQPVIGDFGVA 2766          
BLAST of mRNA_H-elongata_contig17957.4762.1 vs. uniprot
Match: W0RH02_9BACT (Non-specific serine/threonine protein kinase n=1 Tax=Gemmatirosa kalamazoonesis TaxID=861299 RepID=W0RH02_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 4.170e-7
Identity = 22/55 (40.00%), Postives = 32/55 (58.18%), Query Frame = 1
Query:   31 IRLQQDVVTGLGFIHRCGIVHMDLKLENVFLK------HRQNGSYTPVIGDFGLA 177
            +R+ +DV   LGF H CG++H D+K EN+ L        R  G   P++ DFG+A
Sbjct:  122 VRITRDVAEALGFAHECGVIHRDVKPENILLAGHSPDGRRHTGGVRPLVADFGIA 176          
BLAST of mRNA_H-elongata_contig17957.4762.1 vs. uniprot
Match: UPI001FAED77C (serine/threonine protein kinase n=1 Tax=unclassified Geothrix TaxID=2647902 RepID=UPI001FAED77C)

HSP 1 Score: 54.7 bits (130), Expect = 4.200e-7
Identity = 21/47 (44.68%), Postives = 34/47 (72.34%), Query Frame = 1
Query:   37 LQQDVVTGLGFIHRCGIVHMDLKLENVFLKHRQNGSYTPVIGDFGLA 177
            L +++  G+   H  G+VH+DLKL NV L+ R++G++ PV+GDFG+ 
Sbjct:  166 LVRELALGVHAAHARGLVHLDLKLGNVLLQRREDGTFRPVVGDFGMV 212          
BLAST of mRNA_H-elongata_contig17957.4762.1 vs. uniprot
Match: D8S7C8_SELML (Protein kinase domain-containing protein n=14 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8S7C8_SELML)

HSP 1 Score: 54.3 bits (129), Expect = 4.420e-7
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1
Query:   28 VIRLQQDVVTGLGFIHRCGIVHMDLKLENVFLKHRQNGSYTPVIGDFGLA 177
            V  + +++   L  +H  GIVH DLKLENVF K +   + TPVIGDFG+A
Sbjct:   67 VAEIVKELAETLKGVHSSGIVHRDLKLENVFTKLQDASTITPVIGDFGVA 116          
BLAST of mRNA_H-elongata_contig17957.4762.1 vs. uniprot
Match: A0A094DT42_9PEZI (Protein kinase domain-containing protein n=1 Tax=Pseudogymnoascus sp. VKM F-4515 (FW-2607) TaxID=1420909 RepID=A0A094DT42_9PEZI)

HSP 1 Score: 53.5 bits (127), Expect = 1.070e-6
Identity = 21/47 (44.68%), Postives = 32/47 (68.09%), Query Frame = 1
Query:   37 LQQDVVTGLGFIHRCGIVHMDLKLENVFLKHRQNGSYTPVIGDFGLA 177
            + +DV +GL  +H CGIVH DLK EN+ +  + +G++   + DFGLA
Sbjct:   18 IAKDVSSGLSALHACGIVHGDLKFENILIFKQADGTFLAKVSDFGLA 64          
BLAST of mRNA_H-elongata_contig17957.4762.1 vs. uniprot
Match: UPI0011B24441 (serine/threonine protein kinase n=1 Tax=Haliangium sp. UPWRP_2 TaxID=1931276 RepID=UPI0011B24441)

HSP 1 Score: 53.1 bits (126), Expect = 1.410e-6
Identity = 21/49 (42.86%), Postives = 32/49 (65.31%), Query Frame = 1
Query:   31 IRLQQDVVTGLGFIHRCGIVHMDLKLENVFLKHRQNGSYTPVIGDFGLA 177
            ++L QD+   L   HR GI+H D+K +NV ++ + +G   PV+ DFGLA
Sbjct:   69 VKLMQDIAEALHAAHRIGIIHRDMKPQNVLVEQKADGRLRPVVMDFGLA 117          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17957.4762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4KEG3_9EUKA8.560e-850.98Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A8J8L0W4_9BACT1.640e-740.00Non-specific serine/threonine protein kinase n=1 T... [more]
A0A4S5BVT4_9ACTN3.020e-756.82Non-specific serine/threonine protein kinase (Frag... [more]
A0A058ZDG5_FONAL3.100e-742.62Serine/threonine protein kinase n=1 Tax=Fonticula ... [more]
A0A058ZAU8_FONAL3.100e-744.26Serine/threonine protein kinase n=1 Tax=Fonticula ... [more]
W0RH02_9BACT4.170e-740.00Non-specific serine/threonine protein kinase n=1 T... [more]
UPI001FAED77C4.200e-744.68serine/threonine protein kinase n=1 Tax=unclassifi... [more]
D8S7C8_SELML4.420e-750.00Protein kinase domain-containing protein n=14 Tax=... [more]
A0A094DT42_9PEZI1.070e-644.68Protein kinase domain-containing protein n=1 Tax=P... [more]
UPI0011B244411.410e-642.86serine/threonine protein kinase n=1 Tax=Haliangium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17957contigH-elongata_contig17957:175..363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930036.049195-CDS-H-elongata_contig17957:174..3631622930036.049195-CDS-H-elongata_contig17957:174..363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17957 175..363 +
1691679256.0911396-CDS-H-elongata_contig17957:174..3631691679256.0911396-CDS-H-elongata_contig17957:174..363Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17957 175..363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17957.4762.1prot_H-elongata_contig17957.4762.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17957 175..363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17957.4762.1

>prot_H-elongata_contig17957.4762.1 ID=prot_H-elongata_contig17957.4762.1|Name=mRNA_H-elongata_contig17957.4762.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
WLHRCIIYAVIRLQQDVVTGLGFIHRCGIVHMDLKLENVFLKHRQNGSYT
PVIGDFGLADGE*
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mRNA from alignment at H-elongata_contig17957:175..363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17957.4762.1 ID=mRNA_H-elongata_contig17957.4762.1|Name=mRNA_H-elongata_contig17957.4762.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig17957:175..363+ (Himanthalia elongata Himel1 dioecious)
TGGCTCCATCGATGTATTATATATGCCGTCATCAGGCTCCAGCAGGATGT CGTTACGGGGCTGGGATTTATACACCGCTGTGGTATCGTCCACATGGACT TGAAGTTGGAAAATGTTTTTCTAAAACACCGCCAGAACGGAAGCTACACG CCGGTGATCGGTGACTTTGGACTAGCAGATGGTGAGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig17957:175..363+

>mRNA_H-elongata_contig17957.4762.1 ID=mRNA_H-elongata_contig17957.4762.1|Name=mRNA_H-elongata_contig17957.4762.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig17957:175..363+ (Himanthalia elongata Himel1 dioecious)
TGGCTCCATCGATGTATTATATATGCCGTCATCAGGCTCCAGCAGGATGT
CGTTACGGGGCTGGGATTTATACACCGCTGTGGTATCGTCCACATGGACT
TGAAGTTGGAAAATGTTTTTCTAAAACACCGCCAGAACGGAAGCTACACG
CCGGTGATCGGTGACTTTGGACTAGCAGATGGTGAGTGATGGCTCCATCG
ATGTATTATATATGCCGTCATCAGGCTCCAGCAGGATGTCGTTACGGGGC
TGGGATTTATACACCGCTGTGGTATCGTCCACATGGACTTGAAGTTGGAA
AATGTTTTTCTAAAACACCGCCAGAACGGAAGCTACACGCCGGTGATCGG
TGACTTTGGACTAGCAGATGGTGAGTGA
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