prot_H-elongata_contig179557.4761.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig179557.4761.1
Unique Nameprot_H-elongata_contig179557.4761.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length184
Homology
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5KMK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK0_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 1.070e-75
Identity = 115/181 (63.54%), Postives = 141/181 (77.90%), Query Frame = 0
Query:    3 TVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTKYLSKHRHRNLIKLINEFNA 183
            T K  LRYLAG+ DFSITYK+GGF+LA FSD+NW NNP N +STSSY+ MLANAP+SF+  LQGLTA STMEAELVA+AL MKEAVFCSNM+ ELGF + F  +P+Y  N + LH  GNR++S R KHIALR+FF++ELV EGKISIH     D LA +GTK+ +KHR ++L+  IN F+ 
Sbjct:   32 TAKQTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYAPTEDNLAHIGTKHFNKHRFKHLMDRINNFDV 212          
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 4.760e-75
Identity = 118/183 (64.48%), Postives = 143/183 (78.14%), Query Frame = 0
Query:    1 MRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTKYLSKHRHRNLIKLINEFNA 183
            M   KH LRYLAG+ DFSITYK+GGF+LA FSD+NW NNP N +STSSY+ MLANAP+SF+  LQGLTA STMEAELVA+AL MKEAVFCSNM+ ELGF + F  +P+Y  N + LH  GNR++S R KHIALR+FF++ELV EGKISIH     D LAD+GTK+ +KHR  +L+ LIN F+ 
Sbjct:  255 MVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNKHRFEHLMDLINNFDV 437          
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 238 bits (607), Expect = 7.280e-72
Identity = 117/183 (63.93%), Postives = 143/183 (78.14%), Query Frame = 0
Query:    1 MRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTKYLSKHRHRNLIKLINEFNA 183
            M   KH LRYLAG+ DFSITYK+GGF+LA FSD+NW NNP N +STSSY+ MLANAP+SF+  LQGLTA STMEAELVA+AL MKEAVFCSNM+ ELG  + F  +P+Y  N + LH  GNR++S R KHIALR+FF++ELV EGKISIH V   D LAD+GTK+ +KHR ++L+ LIN  + 
Sbjct:  476 MVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNLDV 658          
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 1.340e-71
Identity = 118/183 (64.48%), Postives = 145/183 (79.23%), Query Frame = 0
Query:    1 MRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTKYLSKHRHRNLIKLINEFNA 183
            M   KH LRYLAG+ DFSITYK+GGF+LA FSD+NW NNP N +STSSY+ MLANAP+SF+  LQGLTA STMEAELVA+AL MKEAVFCSNM+ ELGF + F  +P+Y  N + LH  GNR++S R KHIALR+FF++ELV EGKISIH V+  D LAD+GTK+ + HR ++L+ LIN F+ 
Sbjct:  815 MVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKHFNNHRFKHLMDLINNFDV 997          
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 1.570e-68
Identity = 116/183 (63.39%), Postives = 143/183 (78.14%), Query Frame = 0
Query:    1 MRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTKYLSKHRHRNLIKLINEFNA 183
            M   KH LRYLAG+ DFSITYK+GGF+LA FSD+NW NNP N +STSSY+ +LANAP+SF+  LQGLTA STMEAELVA+AL M EAVF SNM+ ELGF + F  +P+Y  N + LH  GNR++S R KHIALR+FF++ELV EGKISIH V   D LAD+GTK+ +KHR ++L+ LIN F+ 
Sbjct: 1484 MVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNKHRFKHLMDLINNFDV 1666          
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 224 bits (570), Expect = 9.560e-65
Identity = 111/180 (61.67%), Postives = 139/180 (77.22%), Query Frame = 0
Query:    1 MRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTKYLSKHRHRNLIKLINE 180
            M   KHLLRYL+GS DFSITYK+GGF L A SD NWGNNP N +S SSYI+M++ AP+SFK  LQ LTA ST+EAELVA AL MKE +FC+NM+ ELGF   F S PLYI N + LHV GN+T+S R KH+ALR+F+++E+V+EG+ISIH +   D LAD+GTK+L+K RH+ LI  I +
Sbjct:  509 MGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNKQRHQCLIDKIKK 687          
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5KCX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCX7_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 7.990e-64
Identity = 120/260 (46.15%), Postives = 148/260 (56.92%), Query Frame = 0
Query:    1 MRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLY---------IGNMS-------------------------------------------------------------------ALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTK-YLSKHRHRNLIKLINEFNA 183
            M   KH LRYLAG+ DFSITYK+GGF+LA FSD+NW NNP N +STSSY+ MLANAP+SF+  LQGLTA STMEAELVA+AL MKEAVFCSNM+ ELGF + F  +P+Y         +GN S                                                                    LH  GNR++S R KHIALR+FF++ELV EGKISIH V   D LAD+GTK +++KHR ++L+ L+N F+ 
Sbjct:    1 MVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFINKHRFKHLMDLVNNFDV 260          
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 5.750e-60
Identity = 103/183 (56.28%), Postives = 132/183 (72.13%), Query Frame = 0
Query:    1 MRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTKYLSKHRHRNLIKLINEFNA 183
            M   K   RYLAG+T F I YK+GGF+L AF+D+NWGNNP N +STSS++ ML +AP++FK  LQ LT +STME ELVA AL +KEAVFCSN++ ELGF +    VPLY  N + LH  GNR+YS   KHIALR+FF++ELV EG+I+IH V      AD+GTK+L+K R + L+ +I  FN 
Sbjct:  538 MGAAKRTFRYLAGTTYFKIPYKRGGFKLTAFTDSNWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTKHLNKDRFQLLLNIIKNFNV 720          
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 1.620e-58
Identity = 102/181 (56.35%), Postives = 135/181 (74.59%), Query Frame = 0
Query:    1 MRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTKYLSKHRHRNLIKLINEF 181
            M   KHLLRYL+GS DFSITYK+GGF L A S+ N G+N  N +S SSYI+M++ AP S K  LQ LTA ST+EAELVA+AL MKE +FC+NM+ ELGF   F S PL+I + + L+V GN+T+S   KH+ALR+F+++++V+EG+ISIH +   D LAD+GT+YL+K RH+ LI  I  F
Sbjct:  596 MGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNKQRHQYLIDKIKNF 776          
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 1.210e-55
Identity = 101/180 (56.11%), Postives = 127/180 (70.56%), Query Frame = 0
Query:    4 VKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYIVMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFDESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIHCVKIADQLADLGTKYLSKHRHRNLIKLINEFNA 183
            +  +LRY     D  ITYK  GF+L  FSDTNW NNP N +STS Y  ML +AP+S K  +QG  A STMEAEL+A+AL MKEAVFCSNM+ ELGF + F  VPLY  N + LH  GNR++S R  HIALR+F+++ELV EG+ISIH V     LAD+GTKYL+KH  ++L+ +I+ FN 
Sbjct: 1021 IAQVLRY-----DIIITYKSEGFKLGTFSDTNWANNPDNGKSTSCYWTMLEHAPVSLKSGIQGPAAISTMEAELIASALAMKEAVFCSNMLTELGFGKEFAQVPLYCDNTATLHALGNRSFSSRENHIALRFFYIRELVLEGRISIHYVPTDSNLADIGTKYLNKHWLKHLLDIISSFNV 1195          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179557.4761.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMK0_9PHAE1.070e-7563.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5U2_9PHAE4.760e-7564.48Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE7.280e-7263.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE1.340e-7164.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE1.570e-6863.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE9.560e-6561.67CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KCX7_9PHAE7.990e-6446.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG39_9PHAE5.750e-6056.28Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L6R7_9PHAE1.620e-5856.35Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JBV6_9PHAE1.210e-5556.11Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 3..165
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 3..165

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179557contigH-elongata_contig179557:391..942 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179557.4761.1mRNA_H-elongata_contig179557.4761.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig179557 391..945 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig179557.4761.1 ID=prot_H-elongata_contig179557.4761.1|Name=mRNA_H-elongata_contig179557.4761.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=184bp
MRTVKHLLRYLAGSTDFSITYKQGGFRLAAFSDTNWGNNPGNSRSTSSYI
VMLANAPISFKVELQGLTAKSTMEAELVATALIMKEAVFCSNMILELGFD
ESFGSVPLYIGNMSALHVAGNRTYSPRAKHIALRYFFVKELVEEGKISIH
CVKIADQLADLGTKYLSKHRHRNLIKLINEFNA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like