mRNA_H-elongata_contig17953.4759.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17953.4759.1
Unique NamemRNA_H-elongata_contig17953.4759.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig17953.4759.1 vs. uniprot
Match: D7FPD4_ECTSI (Protein phosphatase 2A regulatory subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD4_ECTSI)

HSP 1 Score: 325 bits (834), Expect = 9.240e-97
Identity = 249/615 (40.49%), Postives = 305/615 (49.59%), Query Frame = 2 
Query:   17 AAPFFTPSTFIRLPRDIRGRISSQLFFKLVYESVSLQKIKLTLHFYDSQGLGFLNEQDMENYVFDHIPTMSALQSLDEDFYPFYVFNAVRRFIFFLDPRRTGKIAVDTLVRSRVMEEFLELRLAGSTISNPDSG------------------------------------------GNPGSGDGRE-----PGDRPQGADSSPPPAMDQNLSNNWFSVDNTLRVYGEYLELDADQSGMLSKEELAHFGSRKQIRLTPTFVQRLFEEVVTYEVPATSPSPSFSPTRLSHPHQSQPCXXXXEDAERLSPPPQRPQPQQATNTLIAPLTATTSESSRQRIHQSPSRNGSLKDAVRPAPLPLLSLSPLLSPXXXXPISP-IDVAPSFSAASXXXXXSLPSTEPVTNVRGLLPLSPTRSPPAXXXXXXXXXXXXXXXXXXXFSSAAVAPATLTQEAENPPLSPDAQAPPGEGHGVARTLRGSCGNEGEVGRRRGRRTTRRRTKGEIDYKTFLDLVLAFENKQTRQAMKYFWRMLDVDHTGRLTGATISLFFRDVTHMLKEEGLVPARSVDVKDEIFDMVKPKDPAFITFADLFESGAGHTVISMLFDTNGFWLYDNRESL 1717
            AA  F   TF+R PRDIR RI S++FFK VYESV+LQK +LTLHFYDS+GLGFL EQD+ENYV+DHIPTM AL+++ ++FYPFYVF AVRRF+FFLDP+RTGKI++DTLVRSRVMEEFL++R+A      P                                             G  G+   RE      G R  G + SP     Q+LS NWFS ++TLRVYGEYLELD DQ+GMLSK+EL +F +                        A + +PS S   ++ P      XXXX                    + + PL+ T               NG ++                 +P    P+SP I   P+ +  S     S                   ++ PAXXXXXXXXXXXX                                                                R   + ++DYKTFLDLVLA +NK+TRQAM+YFWR+LDV   GRLT +TI LFFRD+ H L+E G     + DVKDEIFDMVKP DP FIT ADL  SGAGHTV+SML DTNGFW YDNRESL
Sbjct:  274 AAACFRSRTFLRFPRDIRARIPSRVFFKHVYESVTLQKTRLTLHFYDSEGLGFLREQDLENYVYDHIPTMPALRAIHDNFYPFYVFTAVRRFMFFLDPKRTGKISIDTLVRSRVMEEFLQVRIAPGEQEEPGYAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAATVGGVGTTPSREGAPQGEGGRDDGNNHSPL----QDLSKNWFSAESTLRVYGEYLELDEDQNGMLSKQELVNFAA------------------------AAAATPSCS---IACPXXXXXXXXXXXXXXXXX------------XSGLLPLSPT---------------NGGVR-----------------TPSPTRPVSPGIGGGPTTAVGSSSPLCSXXXXXXXXXXXXX------KASPAXXXXXXXXXXXX----------------------------------------------------------------RAAGEAQMDYKTFLDLVLAMDNKRTRQAMQYFWRVLDVQGKGRLTISTIHLFFRDIAHALEEGGFETPTTDDVKDEIFDMVKPADPTFITLADLLASGAGHTVVSMLVDTNGFWAYDNRESL 743
[Close]
BLAST of mRNA_H-elongata_contig17953.4759.1 vs. uniprot
Match: A0A6H5KJ60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ60_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 8.260e-91
Identity = 255/677 (37.67%), Postives = 304/677 (44.90%), Query Frame = 2 
Query:   17 AAPFFTPSTFIRLPRDIRGRISSQLFFKLVYESVSLQKIKLTLHFYDSQGLGFLNEQDMENYVFDHIPTMSALQSLDEDFYPFYVFNAVRRFIFFLDPRRTG----------------------------------------------KIAVDTLVRSRVMEEFLELRLAGSTISNPDSG------------------------------------------------GNPGSGDGREPGDRPQGA-DSSPPPAMDQNLSNNWFSVDNTLRVYGE---------------YLELDADQSGMLSKEELAHFGSRKQIRLTPTFVQRLFEEVVTYEVPATSPSPSFSPTRLSHPHQSQPCXXXXEDAERLSPPPQRPQPQQATNTLIAPLTATTSESSRQRIHQSPSRNGSLKDAVRPAPLPLLSLSPLLSPXXXXPISPIDVAPSFSAASXXXXXSLPSTEPVTNVRGLLPLSPTRSPPAXXXXXXXXXXXXXXXXXXXFSSAAVAPATLTQEAENPPLSPDAQAPPGEGHGVARTLRGSCGNEGEVGRRRGRRTTRRRTKGEIDYKTFLDLVLAFENKQTRQAMKYFWRMLDVDHTGRLTGATISLFFRDVTHMLKEEGLVPARSVDVKDEIFDMVKPKDPAFITFADLFESGAGHTVISMLFDTNGFWLYDNRESL 1717
            AA  F   TF+R PRDIR RISS++FFK VYESV+LQK +LTLHFYDS+GLGFL EQD+ENYV+DHIPTM AL+++ ++FYPFYVF AVRRF+FFLDP+RTG                                              KI++DTLVRSRVMEEFL++R+A      P S                                                 G  GS   RE   + +G  D +   +  Q+LS NWFS ++TLRVYGE               YLELD DQ+GMLSK+EL +FG  +  R    + +      V       SPS   SP   S                  SPPP             A   AT S S    + ++ +               LL LSP                                    TN  G+  LSPTR               XXXXXXXX                    SP             R         GE                ++DYKTFLDLVLA +NKQTRQAM+YFWR+LDV   GRLT +TI LFFRD+   L+E G     + DVKDEIFDMVKP DP FIT ADL  SGAGHTV++ML DTNGFW YDNRESL
Sbjct:  149 AAACFRSRTFLRFPRDIRARISSRVFFKHVYESVTLQKTRLTLHFYDSEGLGFLREQDLENYVYDHIPTMPALRAIHDNFYPFYVFTAVRRFMFFLDPKRTGVSRAWACSPIDSDLADFADMDMLERRACVPVFVSKERRISRKERAGKISIDTLVRSRVMEEFLQVRMAPGEQGEPGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVGGVGSTLSREGAPQGEGGRDDTGNHSPLQDLSKNWFSAESTLRVYGEVGGWVGGVGGGXAFEYLELDEDQNGMLSKQELVNFGRTEADRGKGEYKRERAGGAVV------SPSSPVSPPLPS------------------SPPP-------------ATAAATPSCSIACPVPRTSAAXXXXXXXXXXXXSGLLPLSP------------------------------------TN-GGVRTLSPTRPVSPGIGGGPTTAVGXXXXXXXXXXXXXXXXXXXXXXXXXXKASPAXXXXXXXXXXXXRAA-------GEA---------------QMDYKTFLDLVLAMDNKQTRQAMQYFWRVLDVQGKGRLTNSTIHLFFRDIARALEEGGFETPTTDDVKDEIFDMVKPADPTFITLADLLASGAGHTVVTMLVDTNGFWTYDNRESL 729
[Close]
BLAST of mRNA_H-elongata_contig17953.4759.1 vs. uniprot
Match: A0A7S4R799_9DINO (Calmodulin n=3 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4R799_9DINO)

HSP 1 Score: 229 bits (583), Expect = 1.810e-63
Identity = 169/564 (29.96%), Postives = 218/564 (38.65%), Query Frame = 2 
Query:   26 FFTPSTFIRLPRDIRGRISSQLFFKLVYESVSLQKIKLTLHFYDSQGLGFLNEQDMENYVFDHIPTMSALQSLDEDFYPFYVFNAVRRFIFFLDPRRTGKIAVDTLVRSRVMEEFLELRLAGSTISNPDSGGNPGSGDGREPGDRPQGADSSPPPAMDQNLSNNWFSVDNTLRVYGEYLELDADQSGMLSKEELAHFGSRKQIRLTPTFVQRLFEEVVTYEVPATSPSPSFSPTRLSHPHQSQPCXXXXEDAERLSPPPQRPQPQQATNTLIAPLTATTSESSRQRIHQSPSRNGSLKDAVRPAPLPLLSLSPLLSPXXXXPISPIDVAPSFSAASXXXXXSLPSTEPVTNVRGLLPLSPTRSPPAXXXXXXXXXXXXXXXXXXXFSSAAVAPATLTQEAENPPLSPDAQAPPGEGHGVARTLRGSCGNEGEVGRRRGRRTTRRRTKGEIDYKTFLDLVLAFENKQTRQAMKYFWRMLDVDHTGRLTGATISLFFRDVTHMLKEEGLVPARSVDVKDEIFDMVKPKDPAFITFADLFESGAGHTVISMLFDTNGFWLYDNRESL 1717
            FF PS F++ PRD  G I+   FF  V   V++++ ++ L +YD+ G G+L E+DMEN++F+ IPT+  L SL E FYPFYVF AVR+F FFLDP+RTGK+ +  L+ S ++ E  ELR                        ++P G          Q+  NNWFS+ + LRVYG YLELDADQ+GMLSK EL+ FGS     LT  F+ R+FEE  TY                              DAE                                                                                                                                                   EN                                              E+DYKTFLD VLA ENK T+QA++YFW+++D+ H GRL G TI+ FFR +  +L+ +    A   DVKDEIFDMV+ K P FIT  DL     G TV+S+L D   FW YDNRESL
Sbjct:  147 FFIPSIFLKFPRDRNGCIAIGPFFMFVVRKVNIRQTRVQLSYYDALGCGYLREKDMENFIFELIPTLPQLDSLQEGFYPFYVFTAVRKFFFFLDPKRTGKLRIRDLLSSSILPELYELRQ-----------------------EQPLGG---------QDAENNWFSMQSALRVYGAYLELDADQNGMLSKSELSRFGSGM---LTDVFIDRVFEEYQTYR-----------------------------DAET-------------------------------------------------------------------------------------------------------------------------------------------------GEN----------------------------------------------EMDYKTFLDFVLAMENKNTKQAIQYFWKLIDIHHQGRLDGFTINYFFRSILALLRRKKFDVASVDDVKDEIFDMVQAKQPGFITSQDLVNCRQGGTVLSILIDAAAFWRYDNRESL 455
[Close]
BLAST of mRNA_H-elongata_contig17953.4759.1 vs. uniprot
Match: A0A7S1WIZ3_ALECA (Calmodulin n=2 Tax=Alexandrium TaxID=2924 RepID=A0A7S1WIZ3_ALECA)

HSP 1 Score: 224 bits (570), Expect = 1.190e-61
Identity = 166/564 (29.43%), Postives = 217/564 (38.48%), Query Frame = 2 
Query:   26 FFTPSTFIRLPRDIRGRISSQLFFKLVYESVSLQKIKLTLHFYDSQGLGFLNEQDMENYVFDHIPTMSALQSLDEDFYPFYVFNAVRRFIFFLDPRRTGKIAVDTLVRSRVMEEFLELRLAGSTISNPDSGGNPGSGDGREPGDRPQGADSSPPPAMDQNLSNNWFSVDNTLRVYGEYLELDADQSGMLSKEELAHFGSRKQIRLTPTFVQRLFEEVVTYEVPATSPSPSFSPTRLSHPHQSQPCXXXXEDAERLSPPPQRPQPQQATNTLIAPLTATTSESSRQRIHQSPSRNGSLKDAVRPAPLPLLSLSPLLSPXXXXPISPIDVAPSFSAASXXXXXSLPSTEPVTNVRGLLPLSPTRSPPAXXXXXXXXXXXXXXXXXXXFSSAAVAPATLTQEAENPPLSPDAQAPPGEGHGVARTLRGSCGNEGEVGRRRGRRTTRRRTKGEIDYKTFLDLVLAFENKQTRQAMKYFWRMLDVDHTGRLTGATISLFFRDVTHMLKEEGLVPARSVDVKDEIFDMVKPKDPAFITFADLFESGAGHTVISMLFDTNGFWLYDNRESL 1717
            FF PSTF++ PRD  G I+   FF  V   V++++ ++ L +YD  G G+L E+DMEN++F+ IPT+  L SL E+FYPFYVF AVR+F FFLDP+RTG++ +  L+ S ++ E  ELR                        D+P GA+++          NNWFS+ + LRVYG YLELD DQ+GMLSK EL+ FGS     LT  F+ R+FEE  TY                              DAE                                                                                                                                                   EN                                              E+DYKTFLD VLA ENK T+QA++YFW+++D+ H GRL G TI+ FFR +  +L+ +        DVKDEIFDMV+   P  IT  DL     G TV+S+L D   FW YDNRESL
Sbjct:  146 FFIPSTFLKFPRDQYGCIAIGPFFMFVVRKVNIRQTRVQLSYYDVLGCGYLREKDMENFIFELIPTLPQLDSLQEEFYPFYVFTAVRKFFFFLDPKRTGRLRIRDLLSSSILPELYELRQ-----------------------DQPLGAETA---------ENNWFSMQSALRVYGAYLELDVDQNGMLSKSELSRFGSGM---LTDVFIDRIFEEYQTYR-----------------------------DAET-------------------------------------------------------------------------------------------------------------------------------------------------GEN----------------------------------------------EMDYKTFLDFVLAMENKNTKQAIQYFWKLIDIHHMGRLDGFTINYFFRSILALLRRKKFDVVSVDDVKDEIFDMVQATQPGSITLQDLINCRQGGTVLSILIDAAAFWRYDNRESL 454
[Close]
BLAST of mRNA_H-elongata_contig17953.4759.1 vs. uniprot
Match: A0A813A215_SYMMI (Calmodulin (Fragment) n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A813A215_SYMMI)

HSP 1 Score: 218 bits (555), Expect = 1.110e-60
Identity = 166/564 (29.43%), Postives = 214/564 (37.94%), Query Frame = 2 
Query:   26 FFTPSTFIRLPRDIRGRISSQLFFKLVYESVSLQKIKLTLHFYDSQGLGFLNEQDMENYVFDHIPTMSALQSLDEDFYPFYVFNAVRRFIFFLDPRRTGKIAVDTLVRSRVMEEFLELRLAGSTISNPDSGGNPGSGDGREPGDRPQGADSSPPPAMDQNLSNNWFSVDNTLRVYGEYLELDADQSGMLSKEELAHFGSRKQIRLTPTFVQRLFEEVVTYEVPATSPSPSFSPTRLSHPHQSQPCXXXXEDAERLSPPPQRPQPQQATNTLIAPLTATTSESSRQRIHQSPSRNGSLKDAVRPAPLPLLSLSPLLSPXXXXPISPIDVAPSFSAASXXXXXSLPSTEPVTNVRGLLPLSPTRSPPAXXXXXXXXXXXXXXXXXXXFSSAAVAPATLTQEAENPPLSPDAQAPPGEGHGVARTLRGSCGNEGEVGRRRGRRTTRRRTKGEIDYKTFLDLVLAFENKQTRQAMKYFWRMLDVDHTGRLTGATISLFFRDVTHMLKEEGLVPARSVDVKDEIFDMVKPKDPAFITFADLFESGAGHTVISMLFDTNGFWLYDNRESL 1717
            +F PST+++ PRD  G I+   FF  V   V+L++ ++ L +YD+ G GFL E+DMEN++F+ IPT+  L SL E+FYPFYVF AVR+F FFLDP+RTG++ +  L+ S+++ E  ELR                                   P  D  L  NWFS  + L+VYG YL LD DQ+GMLSK EL+ FGS     LT  FV R+FEE  TY                                                                             +DA                                                                                                                                   E G R            E+DYKTFLD VLA ENK T QA++YFW+++D+ HTG + G  I+ FFR +  +L+ +    A   DVKDEIFDMVK K P  IT  DL +   G TV+SML D   FWLYDNRESL
Sbjct:   42 YFLPSTYLKFPRDQSGCIAIVPFFTFVVRKVNLRQTRVQLSYYDALGCGFLREKDMENFIFEMIPTLPQLNSLTEEFYPFYVFTAVRKFFFFLDPKRTGRVRIRDLLSSQILPELYELRQE--------------------------------QPLADAEL--NWFSTQSALKVYGAYLFLDVDQNGMLSKTELSRFGSGM---LTDVFVDRVFEEYQTY-----------------------------------------------------------------------------RDA-----------------------------------------------------------------------------------------------------------------------------------ETGER------------EMDYKTFLDFVLAMENKNTPQAIQYFWKLVDIHHTGCIDGFVINYFFRAIVKLLRAKSPDIASVDDVKDEIFDMVKSKTPGIITQQDLVQCRQGGTVLSMLIDATAFWLYDNRESL 348
[Close]
BLAST of mRNA_H-elongata_contig17953.4759.1 vs. uniprot
Match: A0A835YRV6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRV6_9STRA)

HSP 1 Score: 224 bits (572), Expect = 1.880e-59
Identity = 185/610 (30.33%), Postives = 232/610 (38.03%), Query Frame = 2 
Query:    8 PRNAAPFFTPSTFIRLPRD--IRGRISSQLFFKLVYESVSLQKIKLTLHFYDSQGLGFLNEQDMENYVFDHIPTMSALQSLDEDFYPFYVFNAVRRFIFFLDPRRTGKIAVDTLVRSRVMEEFLELRLAGSTISNPDSGGNPGSGDGREPGDRPQGADSSPPPAMDQNLSNNWFSVDNTLRVYGEYLELDADQSG------------------------------------MLSKEELAHFGSRKQ--IRLTPTFVQRLFEEVVTYEVPATSPSPSFSPTRLSHPHQSQPCXXXXEDAERLSPPPQRPQPQQATNTLIAPLTATTSESSRQRIHQSPSRNGSLKDAVRPAPLPLLSLSPLLSPXXXXPISPIDVAPSFSAASXXXXXSLPSTEPVTNVRGLLPLSPTRSPPAXXXXXXXXXXXXXXXXXXXFSSAAVAPATLTQEAENPPLSPDAQAPPGEGHGVARTLRGSCGNEGEVGRRRGRRTTRRRTKGEIDYKTFLDLVLAFENKQTRQAMKYFWRMLDVDHTGRLTGATISLFFRDVTHMLKEEGLVPARSVDVKDEIFDMVKPKDPAF-ITFADLFESGAGHTVISMLFDTNGFWLYDNRES 1714
            P  A  +F   TF++L        R+S  L FK VY ++ LQK ++TLH+YD++G G L E D+ENYV+D IPT+ AL+++ E F+PFYVF AVRRF+FFLDPRR G+I V  L+RSRVM++ LEL +A               G G   G+ P G           ++S NWFS +N LRVY EYLELD DQ+G                                    MLS+EEL  +G+ +   + LTP FV  +FEE+VTY+V A                                                                  P  +G+                                                                                             A A A           S  AQ                                     GE+DYKTFLD VLA EN+ T Q + Y WR LDV   G L    +S F RDV   L+  GL P    DV +E+FDM  P DPA  IT  DL   GA HTV+SML D N FW YDNRES
Sbjct:  310 PARARKYFEARTFLKLQAGGAAAWRVSGPLLFKHVYGALCLQKTRVTLHYYDAEGRGALRETDVENYVYDLIPTVPALRAVPESFHPFYVFTAVRRFMFFLDPRRMGRIPVARLIRSRVMDDLLELGMA--------------VGGGGSEGEEPAG-----------DMSGNWFSAENALRVYTEYLELDTDQNGALLIGALSLCRPTPDPTFAATXXXXXXXXXXXXXXGMLSREELRAYGASRNPPMHLTPAFVNAVFEEIVTYKVAAA-----------------------------------------------------------------PQDDGT---------------------------------------------------------------------------------------------AAADAXXXXXXXXXXXSGGAQP------------------------------------GEMDYKTFLDFVLAIENRATPQGLAYLWRPLDVRRRGALDAFALSYFLRDVAERLRAGGLDPPVVEDVVNEVFDMAHPADPARGITPRDLLRCGAAHTVVSMLIDANAFWAYDNRES 700
[Close]
BLAST of mRNA_H-elongata_contig17953.4759.1 vs. uniprot
Match: A0A813INV7_POLGL (Calmodulin (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813INV7_POLGL)

HSP 1 Score: 213 bits (541), Expect = 3.150e-59
Identity = 161/564 (28.55%), Postives = 213/564 (37.77%), Query Frame = 2 
Query:   26 FFTPSTFIRLPRDIRGRISSQLFFKLVYESVSLQKIKLTLHFYDSQGLGFLNEQDMENYVFDHIPTMSALQSLDEDFYPFYVFNAVRRFIFFLDPRRTGKIAVDTLVRSRVMEEFLELRLAGSTISNPDSGGNPGSGDGREPGDRPQGADSSPPPAMDQNLSNNWFSVDNTLRVYGEYLELDADQSGMLSKEELAHFGSRKQIRLTPTFVQRLFEEVVTYEVPATSPSPSFSPTRLSHPHQSQPCXXXXEDAERLSPPPQRPQPQQATNTLIAPLTATTSESSRQRIHQSPSRNGSLKDAVRPAPLPLLSLSPLLSPXXXXPISPIDVAPSFSAASXXXXXSLPSTEPVTNVRGLLPLSPTRSPPAXXXXXXXXXXXXXXXXXXXFSSAAVAPATLTQEAENPPLSPDAQAPPGEGHGVARTLRGSCGNEGEVGRRRGRRTTRRRTKGEIDYKTFLDLVLAFENKQTRQAMKYFWRMLDVDHTGRLTGATISLFFRDVTHMLKEEGLVPARSVDVKDEIFDMVKPKDPAFITFADLFESGAGHTVISMLFDTNGFWLYDNRESL 1717
            FF PSTF++ PRD  G I+   FF  V   V+L++ ++ L +YD+ G G+L E+DMEN++F+ IPT+  L +L E+FYPFYVF AVR+F FFLDP+RTG++ +  L+ S ++ E  ELR                        ++P GA             +NWFS+ + L+VYG YL LD DQ+GMLS+ EL+ +GS     LT  F+ R+FEE  TY                                                                                                                                                                                                                 + E G R            E+DYKTFLD VLA ENK +R A++YFW+M+D++H G +    I  FFR V +ML+      A   DVKDEIFDMVK KDP  I+  DL E   G TV+SML D   FW YDNRESL
Sbjct:    2 FFLPSTFLKFPRDHSGCIAIVPFFTFVVRKVNLKQTRVQLSYYDALGCGYLREKDMENFIFEMIPTLPQLSTLQEEFYPFYVFTAVRKFFFFLDPKRTGRVHIRDLLSSPILPELYELRQ-----------------------EQPLGA---------SEAESNWFSMQSALKVYGAYLFLDVDQNGMLSRNELSRYGSGM---LTDVFIDRVFEEYQTYR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DSESGER------------EMDYKTFLDFVLAMENKNSRPAIQYFWKMIDINHKGYIDSFVIHYFFRAVLNMLQSRHPDIASVDDVKDEIFDMVKSKDPCKISVEDLVECRQGGTVLSMLIDAAAFWRYDNRESL 310
[Close]
BLAST of mRNA_H-elongata_contig17953.4759.1 vs. uniprot
Match: A0A7R9UCK0_9STRA (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCK0_9STRA)

HSP 1 Score: 207 bits (526), Expect = 8.870e-56
Identity = 157/561 (27.99%), Postives = 212/561 (37.79%), Query Frame = 2 
Query:   44 FIRLPRDIRGRISSQLFFKLVYESVSLQKIKLTLHFYDSQGLGFLNEQDMENYVFDHIPTMSALQSLDEDFYPFYVFNAVRRFIFFLDPRRTGKIAVDTLVRSRVMEEFLELRLAGSTISNPDSGGNPGSGDGREPGDRPQGADSSPPPAMDQNLSNNWFSVDNTLRVYGEYLELDADQSGMLSKEELAHFGSRKQIRLTPTFVQRLFEEVVTYEVPATSPSPSFSPTRLSHPHQSQPCXXXXEDAERLSPPPQRPQPQQATNTLIAPLTATTSESSRQRIHQSPSRNGSLKDAVRPAPLPLLSLSPLLSPXXXXPISPIDVAPSFSAASXXXXXSLPSTEPVTNVRGLLPLSPTRSPPAXXXXXXXXXXXXXXXXXXXFSSAAVAPATLTQEAENPPLSPDAQAPPGEGHGVARTLRGSCGNEGEVGRRRGRRTTRRRTKGEIDYKTFLDLVLAFENKQTRQAMKYFWRMLDVDHTGRLTGATISLFFRDVTHMLKEEGLVPARSVDVKDEIFDMVKPKDPAFITFADLFESGAGHTVISMLFDTNGFWLYDNRESLR*G 1726
            F+RLPRD +GR+SSQ  F+ ++ +    + +  L +YD++G G+L EQD+ENY++D I  + +L S+ + F PFYV+ AVRRF+FFLDPRRTG+I+V  L  S VMEEF E+                   DG    D  +GA            + NWFS++NTLRVY  YLELD DQ+GMLSK E + +G R  + LTP FV  LFEE +TY                                                                                                                                                                                                        RT   S G                +++ E+DYKTFLD VLAFEN+++ Q++ + +R+LD    G L+   +  F  D+  +L  +G V     DV  EIFDMV P+ P  +T  DL     GH V+S+L D  GF LYDNRESL  G
Sbjct:  102 FLRLPRDSKGRVSSQEVFRRIHNTTCSMRTRTQLKYYDAEGKGYLREQDLENYLYDFIDNIPSLASMIDSFLPFYVYTAVRRFVFFLDPRRTGRISVAKLANSAVMEEFYEIVSL----------------DGE---DEVEGA------------ARNWFSLENTLRVYNSYLELDVDQNGMLSKSEFSKYGMRNLVHLTPAFVDALFEEALTY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RTGDASSG----------------KSEHEMDYKTFLDFVLAFENRRSPQSIAFLFRVLDFRRNGHLSDFELCYFIHDLLELLASKGQVVPEREDVLQEIFDMVGPESPGLLTLKDLLRCRVGHLVLSILIDVQGFILYDNRESLAGG 415
[Close]
BLAST of mRNA_H-elongata_contig17953.4759.1 vs. uniprot
Match: A0A7S1UEY0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UEY0_9STRA)

HSP 1 Score: 207 bits (527), Expect = 9.870e-54
Identity = 168/558 (30.11%), Postives = 219/558 (39.25%), Query Frame = 2 
Query:   44 FIRLPRDIRGRISSQLFFKLVYESVSLQKIKLTLHFYDSQGLGFLNEQDMENYVFDHIPTMSALQSLDEDFYPFYVFNAVRRFIFFLDPRRTGKIAVDTLVRSRVMEEFLELRLAGSTISNPDSGGNPGSGDGREPGDRPQGADSSPPPAMDQNLSNNWFSVDNTLRVYGEYLELDADQSGMLSKEELAHFGSRKQIRLTPTFVQRLFEEVVTYEVPATSPSPSFSPTRLSHPHQSQPCXXXXEDAERLSPPPQRPQPQQATNTLIAPLTATTSESSRQRIHQSPSRNGSLKDAVRPAPLPLLSLSPLLSPXXXXPISPIDVAPSFSAASXXXXXSLPSTEPVTNVRGLLPLSPTRSPPAXXXXXXXXXXXXXXXXXXXFSSAAVAPATLTQEAENPPLSPDAQAPPGEGHGVARTLRGSCGNEGEVGRRRGRRTTRRRTKGEIDYKTFLDLVLAFENKQTRQAMKYFWRMLDVDHTGRLTGATISLFFRDVTHMLKEEGLVPARSVDVKDEIFDMVKPKDPAFITFADLFESGAGHTVISMLFDTNGFWLYDNRESL 1717
            F+RLPRD +GR+SS   F+ ++ +    + +  L +YDS+G  FL EQD+ENY++D I  + +L ++ E F PFYV+ AVRRF+FFLDPRRTG+I+V  L  S VMEEF E+                G+G  + PG    G  +S     D  L  NWFS++N LRVY  YLELD DQSGMLSK E   FG+R                                                                      LI                                                            SAA       L     +    G+    P +   A                       A+    LT                       RT     G+E E+                 DYK+FLD VLA EN+++ Q++ +F+R+LD    G L+   +S FFRDV+ +L     V     DV +EIFDMV PK P +IT  DL   G GHTVISML D +GF  YDNRESL
Sbjct:  313 FLRLPRDAKGRVSSAEVFRRIHNTTCSMRTRTQLRYYDSEGRDFLREQDLENYLYDFIDNIPSLSTMIESFLPFYVYTAVRRFMFFLDPRRTGQISVKRLASSAVMEEFYEIVAVN------------GAGGSQAPGTGAGGTGASD---YDSRLYKNWFSLENALRVYNSYLELDEDQSGMLSKREFGTFGAR----------------------------------------------------------------------LI------------------------------------------------------------SAAQVGGHMGLTFEGSMAGGAGVCGKHPVQLTQAFVD--------------------ALYEEALTY----------------------RTGEAGMGSEHEM-----------------DYKSFLDFVLAIENRRSPQSIAFFFRVLDFRRLGALSEFELSYFFRDVSDLLAASNEVVPNMEDVLEEIFDMVGPKRPGYITLRDLLRCGVGHTVISMLVDMHGFLSYDNRESL 666
[Close]
BLAST of mRNA_H-elongata_contig17953.4759.1 vs. uniprot
Match: UPI0009E65CD1 (serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E65CD1)

HSP 1 Score: 191 bits (484), Expect = 5.130e-51
Identity = 151/566 (26.68%), Postives = 202/566 (35.69%), Query Frame = 2 
Query:   23 PFFTPSTFIRL-PRDIRGRISSQLFFKLVYESVSLQKIKLTLHFYDSQGLGFLNEQDMENYVFDHIPTMSALQSLDEDFYPFYVFNAVRRFIFFLDPRRTGKIAVDTLVRSRVMEEFLELRLAGSTISNPDSGGNPGSGDGREPGDRPQGADSSPPPAMDQNLSNNWFSVDNTLRVYGEYLELDADQSGMLSKEELAHFGSRKQIRLTPTFVQRLFEEVVTYEVPATSPSPSFSPTRLSHPHQSQPCXXXXEDAERLSPPPQRPQPQQATNTLIAPLTATTSESSRQRIHQSPSRNGSLKDAVRPAPLPLLSLSPLLSPXXXXPISPIDVAPSFSAASXXXXXSLPSTEPVTNVRGLLPLSPTRSPPAXXXXXXXXXXXXXXXXXXXFSSAAVAPATLTQEAENPPLSPDAQAPPGEGHGVARTLRGSCGNEGEVGRRRGRRTTRRRTKGEIDYKTFLDLVLAFENKQTRQAMKYFWRMLDVDHTGRLTGATISLFFRDVTHMLKEEGLVPARSVDVKDEIFDMVKPKDPAFITFADLFESGAGHTVISMLFDTNGFWLYDNRESL 1717
            PFF+ + F +L  +D  GRIS   FF  V   V L + ++ L  YD  G G+L E D+ENY+ + IPT+  L  L++ FY FYV  AVR+F FFLDP RTGKI +  ++    +++ LELR    +    D+                                 NWFS  + LRVYG+YL LD D +GMLSKEELA +GS     LT  FV R+F+E +TY+                                                                                                                                                                                                                                  GE+DYKT+LD VLA EN++  QA++Y +R+LDV   G L   +++ FFR++   +K+ G  P + +DVKDEIFDMVKP DP  I+  DL  SG G TV S+L D NGFW Y+NRE L
Sbjct:   20 PFFSATVFAKLFQQDPFGRISIMQFFNYVMRKVWLHQTRIGLSLYDVAGQGYLKESDLENYILELIPTLPQLDGLEKSFYSFYVCTAVRKFFFFLDPLRTGKIKIQDILACSFLDDLLELRDEDLSKEQQDA---------------------------------NWFSAPSALRVYGQYLSLDTDHNGMLSKEELARYGSGT---LTKVFVDRVFQECLTYD----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GEMDYKTYLDFVLALENRKEPQALQYMFRILDVQALGHLNIFSLNYFFREIQEEMKKHGHEPVKFLDVKDEIFDMVKPTDPYRISLQDLVNSGQGETVTSILIDLNGFWTYENRELL 323
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17953.4759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPD4_ECTSI9.240e-9740.49Protein phosphatase 2A regulatory subunit n=1 Tax=... [more]
A0A6H5KJ60_9PHAE8.260e-9137.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4R799_9DINO1.810e-6329.96Calmodulin n=3 Tax=Alexandrium monilatum TaxID=311... [more]
A0A7S1WIZ3_ALECA1.190e-6129.43Calmodulin n=2 Tax=Alexandrium TaxID=2924 RepID=A0... [more]
A0A813A215_SYMMI1.110e-6029.43Calmodulin (Fragment) n=2 Tax=Symbiodinium TaxID=2... [more]
A0A835YRV6_9STRA1.880e-5930.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A813INV7_POLGL3.150e-5928.55Calmodulin (Fragment) n=1 Tax=Polarella glacialis ... [more]
A0A7R9UCK0_9STRA8.870e-5627.99Serine/threonine-protein phosphatase 2A regulatory... [more]
A0A7S1UEY0_9STRA9.870e-5430.11Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
UPI0009E65CD15.130e-5126.68serine/threonine-protein phosphatase 2A regulatory... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17953contigH-elongata_contig17953:170..6072 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.4
Seed ortholog evalue1.3e-86
Seed eggNOG ortholog2880.D7FPD4
Preferred namePPP2R3C
KEGG koko:K11583
KEGG Pathwayko03015,ko04071,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04151,map04152,map04261,map04728,map05165
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000902,GO:0000910,GO:0000911,GO:0000913,GO:0001776,GO:0001782,GO:0001932,GO:0001934,GO:0002260,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002759,GO:0002831,GO:0002920,GO:0003254,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007275,GO:0008104,GO:0008150,GO:0009524,GO:0009653,GO:0009790,GO:0009792,GO:0009826,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0012505,GO:0015630,GO:0016043,GO:0016049,GO:0019220,GO:0019222,GO:0019899,GO:0019902,GO:0019903,GO:0022402,GO:0022607,GO:0030865,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032101,GO:0032147,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032506,GO:0032989,GO:0033036,GO:0033365,GO:0033674,GO:0034613,GO:0040007,GO:0042325,GO:0042327,GO:0042391,GO:0042592,GO:0043029,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043549,GO:0043900,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045577,GO:0045579,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045859,GO:0045860,GO:0045937,GO:0048285,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048536,GO:0048583,GO:0048589,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050776,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0051094,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051225,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051249,GO:0051251,GO:0051301,GO:0051338,GO:0051347,GO:0051641,GO:0051721,GO:0051881,GO:0051900,GO:0060255,GO:0060560,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070925,GO:0071840,GO:0080090,GO:0090307,GO:0140014,GO:1902105,GO:1902107,GO:1902410,GO:1902850,GO:1903047,GO:1903706,GO:1903708,GO:2000026
EggNOG free text desc.positive regulation of B cell differentiation
EggNOG OGsKOG2562@1,KOG2562@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036
Hectar predicted targeting categoryother localisation
Exons8
Model size2255
Cds size1722
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17953.4759.1prot_H-elongata_contig17953.4759.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17953 171..5540 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930035.7747192-UTR-H-elongata_contig17953:169..1701622930035.7747192-UTR-H-elongata_contig17953:169..170Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17953 170..170 +
1691679255.9797888-UTR-H-elongata_contig17953:169..1701691679255.9797888-UTR-H-elongata_contig17953:169..170Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17953 170..170 +
1622930035.9114513-UTR-H-elongata_contig17953:5540..60721622930035.9114513-UTR-H-elongata_contig17953:5540..6072Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17953 5541..6072 +
1691679256.0556195-UTR-H-elongata_contig17953:5540..60721691679256.0556195-UTR-H-elongata_contig17953:5540..6072Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17953 5541..6072 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930035.7861562-CDS-H-elongata_contig17953:170..2201622930035.7861562-CDS-H-elongata_contig17953:170..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17953 171..220 +
1691679255.990295-CDS-H-elongata_contig17953:170..2201691679255.990295-CDS-H-elongata_contig17953:170..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17953 171..220 +
1622930035.8038416-CDS-H-elongata_contig17953:885..9811622930035.8038416-CDS-H-elongata_contig17953:885..981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17953 886..981 +
1691679255.9984472-CDS-H-elongata_contig17953:885..9811691679255.9984472-CDS-H-elongata_contig17953:885..981Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17953 886..981 +
1622930035.8202548-CDS-H-elongata_contig17953:1335..15081622930035.8202548-CDS-H-elongata_contig17953:1335..1508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17953 1336..1508 +
1691679256.0065172-CDS-H-elongata_contig17953:1335..15081691679256.0065172-CDS-H-elongata_contig17953:1335..1508Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17953 1336..1508 +
1622930035.8360624-CDS-H-elongata_contig17953:2261..24971622930035.8360624-CDS-H-elongata_contig17953:2261..2497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17953 2262..2497 +
1691679256.0142937-CDS-H-elongata_contig17953:2261..24971691679256.0142937-CDS-H-elongata_contig17953:2261..2497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17953 2262..2497 +
1622930035.8523052-CDS-H-elongata_contig17953:3336..33971622930035.8523052-CDS-H-elongata_contig17953:3336..3397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17953 3337..3397 +
1691679256.0217574-CDS-H-elongata_contig17953:3336..33971691679256.0217574-CDS-H-elongata_contig17953:3336..3397Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17953 3337..3397 +
1622930035.8671846-CDS-H-elongata_contig17953:3721..45361622930035.8671846-CDS-H-elongata_contig17953:3721..4536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17953 3722..4536 +
1691679256.0297446-CDS-H-elongata_contig17953:3721..45361691679256.0297446-CDS-H-elongata_contig17953:3721..4536Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17953 3722..4536 +
1622930035.8827026-CDS-H-elongata_contig17953:4876..50171622930035.8827026-CDS-H-elongata_contig17953:4876..5017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17953 4877..5017 +
1691679256.0377557-CDS-H-elongata_contig17953:4876..50171691679256.0377557-CDS-H-elongata_contig17953:4876..5017Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17953 4877..5017 +
1622930035.8959577-CDS-H-elongata_contig17953:5390..55401622930035.8959577-CDS-H-elongata_contig17953:5390..5540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17953 5391..5540 +
1691679256.0457518-CDS-H-elongata_contig17953:5390..55401691679256.0457518-CDS-H-elongata_contig17953:5390..5540Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17953 5391..5540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17953.4759.1

>prot_H-elongata_contig17953.4759.1 ID=prot_H-elongata_contig17953.4759.1|Name=mRNA_H-elongata_contig17953.4759.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=574bp
MVPRNAAPFFTPSTFIRLPRDIRGRISSQLFFKLVYESVSLQKIKLTLHF
YDSQGLGFLNEQDMENYVFDHIPTMSALQSLDEDFYPFYVFNAVRRFIFF
LDPRRTGKIAVDTLVRSRVMEEFLELRLAGSTISNPDSGGNPGSGDGREP
GDRPQGADSSPPPAMDQNLSNNWFSVDNTLRVYGEYLELDADQSGMLSKE
ELAHFGSRKQIRLTPTFVQRLFEEVVTYEVPATSPSPSFSPTRLSHPHQS
QPCPQPDEDAERLSPPPQRPQPQQATNTLIAPLTATTSESSRQRIHQSPS
RNGSLKDAVRPAPLPLLSLSPLLSPSPSPPISPIDVAPSFSAASASASAS
LPSTEPVTNVRGLLPLSPTRSPPARSPTSSPSPAPSPPLLSPLFSSAAVA
PATLTQEAENPPLSPDAQAPPGEGHGVARTLRGSCGNEGEVGRRRGRRTT
RRRTKGEIDYKTFLDLVLAFENKQTRQAMKYFWRMLDVDHTGRLTGATIS
LFFRDVTHMLKEEGLVPARSVDVKDEIFDMVKPKDPAFITFADLFESGAG
HTVISMLFDTNGFWLYDNRESLR*
back to top

mRNA from alignment at H-elongata_contig17953:170..6072+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17953.4759.1 ID=mRNA_H-elongata_contig17953.4759.1|Name=mRNA_H-elongata_contig17953.4759.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5903bp|location=Sequence derived from alignment at H-elongata_contig17953:170..6072+ (Himanthalia elongata Himel1 dioecious)
GATGGTTCCTCGGAATGCGGCGCCGTTTTTCACGCCCAGTACGTTTATCA
GGTGAAAGACCTCTTCCCCCCTCCCTCCCTCTCTCTCCCCAGTAGCTCTA
TTTCCTTGACGGTCAAAACCCGCATGTTTTTCTTATGTTTTTTCGGGTTT
GTTTTCGCGCATAGCATAGCAGCAATCACAAACAAAATGGCGCTTCCGAT
GAAAAAGCAGTAACGGTAGAGAGAGGGGAATGGGGGGTGGGGGGCAAATG
ATTCCCCGCCGTTTTACCTCCAGCCGCGTGTTTGTTGCTCTGTTGGGGGG
GGGGGATGTTGACGGTATTATTATGAAAAAACGTTTGAACTCATTCCAAC
CCTCGGAATATCCACGCCTTCTTAGCACCATGCGAGGTGTAGTCAAGAGG
ACCAACTATCGTCAGGTTCGAATGTGGACATTGCATCTACAATTTTATCT
ATATTCAAGCACAAAATCGTCATATATGTGATTATTCATCATATGGGGAC
GATATTATTTCTATTAGACACAATGATTGATCCCTTGACGTGAAAATTGA
TAGCCTCTCTGCGTTCTAGCCACGACGTTTCCTATATTTTTTTTCTTCTT
CTTATGCTTCTTTATGCCGTCACTTTTTCCCTCTTCCTCCATTATACCCC
CCCCCACCCCCCCCCCTCTTCTCATATCCCTGCGGGTGATGAATGATGGG
CGGTTAAACACGTCAGGCTTCCGCGGGATATTCGTGGGCGTATCTCGTCT
CAGCTATTCTTCAAGCTGGTGTACGAGTCAGTGTCCCTGCAAAAGATCAA
GCTTACGCTGCAGTGAGTAGTACCGTGATTTGGTCATTTTCAAGCTATTC
ATAGCTGATAATAATAAAGCCTCCCGATTCCCTCCTCCCATTTTCTGTCC
CTTCAAAAAAAAAAAAAAAACTCTCAATTTTAACATGTTTTTATATTTTC
CCTTTTCCATAAAATATCGCCGAGTACTGCTTTTATTAATTTTGGTTGTC
TATATTCCAGCGCCAGAAACGAACCGCATTAACTAAACATTTTACATATA
TTTTCTGATATATATATATATATATATATATATCGAAATTGTCCACAAAC
TTTCGCCTGGGTCTCGTCTGCTCTCTTTTTTTTCATCTCACCGCCCGCCC
GCCCTCTTTCCCGCAGTTTTTACGACTCTCAAGGCCTTGGGTTCCTTAAC
GAACAAGACATGGAGAACTATGTGTTCGACCACATTCCCACCATGTCCGC
GCTGCAGTCCTTAGACGAGGACTTCTACCCTTTTTACGTGTTCAACGCCG
TTCGACGGTTCATTTTCTTCCTCGACCCGAGGCGAACAGGTCAGCGTCGG
ATCGTGTCGGAGAAGGGATATACATGCAGCACGCGTCGACATGCCCCATT
TCGATGCATGGGACGGAACGGGATGGTGTGGTGTGGTGTAGTGAAATGAA
ATTCGAAAGTCCTTCGGAAGAGAAGAGAAGAGGCCGCAAACGCTTGAAGC
GCACGTCCAACAATTATTTCTGACTTTTTATCTCTCTCCATCATAGTATA
TTTCTCTCTTTTACTATCTTTGTCGAATACTTAAGGTATACTTGTACCTG
GATCCTTCTTAGCGCGCACGTGTCTCGTCACTGCTGCCTTGAATTCGCTA
CGGCATTGGTGATCGTAGCGAGTGCCGAAGGCGGCGTAGTGTTCTCGGGG
TGTGCTCACGCAACAAACAACAACCTTCGTGGTCGTCCTTCGCCGCCGAT
GTGCCCTCAGCTGCCCTGCCTCACGCGGCTCATCGCAATGGCTCTTCTTT
GAACTCCCTCCCGTCTGTCTGCCGACCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCCCCCCCCCCCCTCTCTTT
CTCTCCTTCCTTTNNNNNNNNNNCCCCCGCGCCCCCCCCCCCCCGGGCCC
ACCCGAATCGCCCTTTTTTTACCCCCCCCCCCCCTGTCTGCCCCCCCCCC
CCCCCCCCCCCCACGCCGCCTAGCCGCATAATCATCATCCTGACCGCCCC
GGTCCCTCTATTTGTTTCCACAATTGTAATTGATATCTCAAGGCAAAATT
GCTGTAGACACCCTGGTGCGGAGCCGCGTCATGGAGGAATTCTTAGAGCT
GAGACTGGCGGGGTCCACGATCAGCAACCCCGACAGTGGTGGTAACCCGG
GAAGTGGAGATGGGCGGGAACCCGGGGATCGGCCACAAGGTGCGGACTCA
TCCCCTCCTCCGGCGATGGACCAAAATCTCAGCAATAATTGGTTCTCGGT
GGACAATACGCTAAGGGTTTACGGCGAGGTGAGAGAAGGTGGTAAGAGTA
TTTGTCGCCGGGGAAGCGGGGGAAAGCATTGAATTATTGTCGTACCGTGC
GAGTCTGTTACAGTTATATGTGGTGGTTGTGTGAGTTTGCGCGCTTGTTC
GTGCTGGTAACGAACCGGCACAAGATGGTTCTCGTAAAATTCATGTCGAC
CTCTCCCATGTTTAATGAAAAAAAAATCGCGGAGTGTGCATATGAGGGGG
AAAATATTGCTGTTGTTTGTTTGCGGTCGTTGCGTAACGCCTCCACCGGT
ACTAAGAAGACCCGAGCCCTTGAAAAGGGGACCTTGTTACTCCTCTGCGC
ACGCAATTGCAGAGATTATGTCGTCGTTTCTTAACCCCGTGAGGAGCGAT
CGGTATTGTAGTAACCGCTCGCTCGAGTGCGGCAAGGGGTTTTATTCGGA
GCGTAATCGCGGGAGCTCGGGTGCCGTTTTGGGGCAGACTGTAGTCTTCG
GGGTTGTGACTCGATTTGTCTGACGCAATCTCGCCGCCACGCGCCAAGCA
CCTGCGTCATAGCGCTTCAAAGTTAGCTCGAGGTAGTCGTCGAGTGCGAC
GTCGCTCACACCCATTCCGCGGTCGACAGACATCGACCGTGTCCGCCCGT
CTGTCTCTCCCGAGGAAGAGCCGAGGCCGTTTCTCCTGGAAATCTTACTC
GAGGCTCGCTCTTTGTCTATCTCTTTATTTACCTTGACGCTTTAGTCTTT
TATCCTCGTGTCCCCTGTCACCTCTAACTCTGGTCTCTGCGTTTTTGTTT
GTTTTTGTGATTGGGGTGTTGTATTATTATTTTTTCTGTTTTCCGCCGTG
ACGTAATAATCATGAAGTACCTCGAACTGGATGCGGACCAAAGCGGCATG
CTCTCAAAGGAGGAGCTCGCGCATTTTGGTAAGTGTTTGTTTCTTTGGTT
GCTTTTGTCGGCGCAAATATTTATGTGTGTGTTGTTTGACGAAGATTGAC
CATTTTCCACGAAGGTTTCTCCCCTTCCGGCTCTCGATTGAGTGCCCTGG
TAGGTGCTCACAAAGAAGCGTTGTGCGTAGCGCGTGTTCGCGATCGCGTG
CATTCTGCAAGAGAATACATTTATCATTTTCGGGGCGTAAGGATTGCACG
TGTTCCTCAAAGGGACCTCTCTCCGTCTTATGTTGGTCGACCGCCCCTTT
TTTCCCTACCCCGACCCTTCCTCCCCCCTTCCCCTATCCGATATCGTCCC
AGGCTCCCGGAAACAGATACGCCTCACTCCGACGTTCGTCCAGCGGCTCT
TCGAGGAGGTGGTCACGTACGAAGTTCCCGCTACATCGCCGTCGCCCTCC
TTTTCTCCCACGAGGCTCAGCCACCCACATCAATCTCAGCCGTGTCCACA
GCCGGACGAAGATGCGGAAAGGCTTTCTCCGCCGCCCCAACGGCCGCAGC
CGCAGCAGGCAACGAATACACTCATCGCCCCCTTGACCGCAACCACTTCC
GAGAGCAGCAGGCAACGGATACATCAATCTCCGTCGAGGAACGGGTCGCT
GAAAGACGCCGTACGGCCAGCGCCGTTGCCCTTGCTGTCGCTGTCGCCAC
TTCTGTCGCCATCGCCATCACCCCCGATTTCTCCGATCGACGTGGCACCT
TCTTTTTCTGCTGCTTCTGCTTCTGCTTCTGCTTCATTGCCGAGTACAGA
GCCCGTTACAAACGTGCGAGGACTGCTACCATTGTCGCCGACTCGATCAC
CACCCGCGCGATCGCCGACGTCTTCGCCGTCGCCGGCGCCGTCGCCACCG
TTGCTGTCACCGTTATTTTCATCGGCGGCAGTAGCACCGGCTACTTTGAC
GCAGGAAGCCGAGAACCCGCCTCTCTCTCCCGACGCGCAAGCTCCGCCTG
GGGAGGGGCATGGAGTGGCCCGTACTCTCAGGGGAAGTTGCGGCAACGAG
GGAGAGGTCGGGAGGAGGAGAGGACGCAGAACAACGAGGAGGAGGACGAA
GGGAGAAATTGACTACAAGACTTTTCTCGACCTTGTCCTAGCCTTTGAAA
ACAAGCAGACGCGTCAGGTGACTGGCACCCCCAAGGAATGGGAACAGCAC
CGTTCTGTCAGATTGTATCCCGCTCACTAAGACCCCTGTTTCTATGCCGT
CGTTACCCCCCCACACACGCACACACACGGATTGATGACGCTACAAAATT
CAGGCCCTCTTATAATGGAACTCCCCGCAGTAAGGACCATACACCACTGA
CAACTAGATGAACGCCAATCAGATCAATTGATCCCGTGGGAAAGGGACCC
GAATCCTAAAGCTAAGATGAAGTTGAGTCCGCTTGTTTGCGTGTTGCTCT
ATCGCTTCTTCGCTGCTTGTCGTTATTTTATTTTATTTTCCCACCACTAC
CATACAGGCGATGAAGTACTTCTGGAGGATGCTTGACGTCGACCACACGG
GACGGCTCACGGGCGCCACGATCAGCTTATTCTTCCGAGACGTGACGCAC
ATGCTGAAAGAGGAGGGCCTCGTACCCGCCCGCAGCGTTGACGTGAAGGT
AGCATAGGACCCTCAATTGTGCTTACACCACATTCGGTTGCCGTGTGTGT
TCCATAATGGGCTGCGCCTTGCATATATATATATATCTACTAACAGTTGT
GCACAGTAACAGCGCGGTAGTTGTGGGGCGGGTGAGGCCTGCGTCCCATC
GAATAGAAGGGGAGAATGTTGTCAACACCGCGGTATATTGCATGGCTTGT
GTGCCTGAATATTCCCGCTGGGGTTATTCCCCTAGTCAGTTTCGAGGTTA
TTCCCCTTGTCAGTGTCAAATGTGAGTTCAATAGCACCGGCAGCGGCGGC
GACTGAAGCGGACCGCGGTTGCTTCGCCAAACGTGCTTGCTGTATCACGA
TGCAATCCTCGCAAACGGTAGGACGAGATATTCGACATGGTGAAGCCCAA
GGACCCGGCCTTCATCACTTTCGCAGATCTATTCGAGAGCGGTGCTGGGC
ACACGGTGATTAGTATGCTCTTCGACACCAATGGATTCTGGCTGTACGAC
AATCGCGAGAGCTTGAGGTGAGGCAGATCGTGACCGGGGGAGGGTGAAGG
GTGAAGCAAGGGGATGTTCTTGAGCAGGTGGATTGTCCTTCCCGCCTTAC
CTTCTAGAAGAAACGGTGGCAAAGTCGTCTTGATGGAGATCGCGATGTTA
TGGTGTGTCTGCTTGCTGTCGTTGAAATAGGCGATATCCATGCTGCTCTG
CAGAAAGGGCGCAAAAGTATGCTGTCTCTCGAACAAGGGCGTAAAGATAC
ATCACATGGGCGATCTTTCGCGAACGTGTGAAGTCAGCATCAACATCATT
AACACCTCTAACATGTTTTCTTGTTGCCACGACCACCGCACCCGATGCCG
TTGGACTGGCCTTTCCTTCCAACCGTGCCCCCTCCCCGCGCTTCCCCGCT
CCCTTTCCCATCTACCACCCCCATTACCTATGTCCCACGCTTAACTACCG
ACATGACACATGTGACCCACCGCAGCGCCTCTACCGACGAAGAACCGGAT
ACCGCCGATTTCTCGGCGGCCGCGCTCCCTTAAGTGACGACCCTGATCGC
TGT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig17953:170..6072+

>mRNA_H-elongata_contig17953.4759.1 ID=mRNA_H-elongata_contig17953.4759.1|Name=mRNA_H-elongata_contig17953.4759.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3444bp|location=Sequence derived from alignment at H-elongata_contig17953:170..6072+ (Himanthalia elongata Himel1 dioecious)
ATGGTTCCTCGGAATGCGGCGCCGTTTTTCACGCCCAGTACGTTTATCAG
ATGGTTCCTCGGAATGCGGCGCCGTTTTTCACGCCCAGTACGTTTATCAG
GCTTCCGCGGGATATTCGTGGGCGTATCTCGTCTCAGCTATTCTTCAAGC
TGGTGTACGAGTCAGTGTCCCTGCAAAAGATCAAGCTTACGCTGCAGCTT
CCGCGGGATATTCGTGGGCGTATCTCGTCTCAGCTATTCTTCAAGCTGGT
GTACGAGTCAGTGTCCCTGCAAAAGATCAAGCTTACGCTGCATTTTTACG
ACTCTCAAGGCCTTGGGTTCCTTAACGAACAAGACATGGAGAACTATGTG
TTCGACCACATTCCCACCATGTCCGCGCTGCAGTCCTTAGACGAGGACTT
CTACCCTTTTTACGTGTTCAACGCCGTTCGACGGTTCATTTTCTTCCTCG
ACCCGAGGCGAACAGTTTTTACGACTCTCAAGGCCTTGGGTTCCTTAACG
AACAAGACATGGAGAACTATGTGTTCGACCACATTCCCACCATGTCCGCG
CTGCAGTCCTTAGACGAGGACTTCTACCCTTTTTACGTGTTCAACGCCGT
TCGACGGTTCATTTTCTTCCTCGACCCGAGGCGAACAGGCAAAATTGCTG
TAGACACCCTGGTGCGGAGCCGCGTCATGGAGGAATTCTTAGAGCTGAGA
CTGGCGGGGTCCACGATCAGCAACCCCGACAGTGGTGGTAACCCGGGAAG
TGGAGATGGGCGGGAACCCGGGGATCGGCCACAAGGTGCGGACTCATCCC
CTCCTCCGGCGATGGACCAAAATCTCAGCAATAATTGGTTCTCGGTGGAC
AATACGCTAAGGGTTTACGGCGAGGCAAAATTGCTGTAGACACCCTGGTG
CGGAGCCGCGTCATGGAGGAATTCTTAGAGCTGAGACTGGCGGGGTCCAC
GATCAGCAACCCCGACAGTGGTGGTAACCCGGGAAGTGGAGATGGGCGGG
AACCCGGGGATCGGCCACAAGGTGCGGACTCATCCCCTCCTCCGGCGATG
GACCAAAATCTCAGCAATAATTGGTTCTCGGTGGACAATACGCTAAGGGT
TTACGGCGAGTACCTCGAACTGGATGCGGACCAAAGCGGCATGCTCTCAA
AGGAGGAGCTCGCGCATTTTGTACCTCGAACTGGATGCGGACCAAAGCGG
CATGCTCTCAAAGGAGGAGCTCGCGCATTTTGGCTCCCGGAAACAGATAC
GCCTCACTCCGACGTTCGTCCAGCGGCTCTTCGAGGAGGTGGTCACGTAC
GAAGTTCCCGCTACATCGCCGTCGCCCTCCTTTTCTCCCACGAGGCTCAG
CCACCCACATCAATCTCAGCCGTGTCCACAGCCGGACGAAGATGCGGAAA
GGCTTTCTCCGCCGCCCCAACGGCCGCAGCCGCAGCAGGCAACGAATACA
CTCATCGCCCCCTTGACCGCAACCACTTCCGAGAGCAGCAGGCAACGGAT
ACATCAATCTCCGTCGAGGAACGGGTCGCTGAAAGACGCCGTACGGCCAG
CGCCGTTGCCCTTGCTGTCGCTGTCGCCACTTCTGTCGCCATCGCCATCA
CCCCCGATTTCTCCGATCGACGTGGCACCTTCTTTTTCTGCTGCTTCTGC
TTCTGCTTCTGCTTCATTGCCGAGTACAGAGCCCGTTACAAACGTGCGAG
GACTGCTACCATTGTCGCCGACTCGATCACCACCCGCGCGATCGCCGACG
TCTTCGCCGTCGCCGGCGCCGTCGCCACCGTTGCTGTCACCGTTATTTTC
ATCGGCGGCAGTAGCACCGGCTACTTTGACGCAGGAAGCCGAGAACCCGC
CTCTCTCTCCCGACGCGCAAGCTCCGCCTGGGGAGGGGCATGGAGTGGCC
CGTACTCTCAGGGGAAGTTGCGGCAACGAGGGAGAGGTCGGGAGGAGGAG
AGGACGCAGAACAACGAGGAGGAGGACGAAGGGAGAAATTGACTACAAGA
CTTTTCTCGACCTTGTCCTAGCCTTTGAAAACAAGCAGACGCGTCAGGCT
CCCGGAAACAGATACGCCTCACTCCGACGTTCGTCCAGCGGCTCTTCGAG
GAGGTGGTCACGTACGAAGTTCCCGCTACATCGCCGTCGCCCTCCTTTTC
TCCCACGAGGCTCAGCCACCCACATCAATCTCAGCCGTGTCCACAGCCGG
ACGAAGATGCGGAAAGGCTTTCTCCGCCGCCCCAACGGCCGCAGCCGCAG
CAGGCAACGAATACACTCATCGCCCCCTTGACCGCAACCACTTCCGAGAG
CAGCAGGCAACGGATACATCAATCTCCGTCGAGGAACGGGTCGCTGAAAG
ACGCCGTACGGCCAGCGCCGTTGCCCTTGCTGTCGCTGTCGCCACTTCTG
TCGCCATCGCCATCACCCCCGATTTCTCCGATCGACGTGGCACCTTCTTT
TTCTGCTGCTTCTGCTTCTGCTTCTGCTTCATTGCCGAGTACAGAGCCCG
TTACAAACGTGCGAGGACTGCTACCATTGTCGCCGACTCGATCACCACCC
GCGCGATCGCCGACGTCTTCGCCGTCGCCGGCGCCGTCGCCACCGTTGCT
GTCACCGTTATTTTCATCGGCGGCAGTAGCACCGGCTACTTTGACGCAGG
AAGCCGAGAACCCGCCTCTCTCTCCCGACGCGCAAGCTCCGCCTGGGGAG
GGGCATGGAGTGGCCCGTACTCTCAGGGGAAGTTGCGGCAACGAGGGAGA
GGTCGGGAGGAGGAGAGGACGCAGAACAACGAGGAGGAGGACGAAGGGAG
AAATTGACTACAAGACTTTTCTCGACCTTGTCCTAGCCTTTGAAAACAAG
CAGACGCGTCAGGCGATGAAGTACTTCTGGAGGATGCTTGACGTCGACCA
CACGGGACGGCTCACGGGCGCCACGATCAGCTTATTCTTCCGAGACGTGA
CGCACATGCTGAAAGAGGAGGGCCTCGTACCCGCCCGCAGCGTTGACGTG
AAGGCGATGAAGTACTTCTGGAGGATGCTTGACGTCGACCACACGGGACG
GCTCACGGGCGCCACGATCAGCTTATTCTTCCGAGACGTGACGCACATGC
TGAAAGAGGAGGGCCTCGTACCCGCCCGCAGCGTTGACGTGAAGGACGAG
ATATTCGACATGGTGAAGCCCAAGGACCCGGCCTTCATCACTTTCGCAGA
TCTATTCGAGAGCGGTGCTGGGCACACGGTGATTAGTATGCTCTTCGACA
CCAATGGATTCTGGCTGTACGACAATCGCGAGAGCTTGAGGTGAGACGAG
ATATTCGACATGGTGAAGCCCAAGGACCCGGCCTTCATCACTTTCGCAGA
TCTATTCGAGAGCGGTGCTGGGCACACGGTGATTAGTATGCTCTTCGACA
CCAATGGATTCTGGCTGTACGACAATCGCGAGAGCTTGAGGTGA
back to top