mRNA_H-elongata_contig179475.4758.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179475.4758.1
Unique NamemRNA_H-elongata_contig179475.4758.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig179475.4758.1 vs. uniprot
Match: A0A1Y1U9D4_9TREE (Glycosyl hydrolase family 71-domain-containing protein n=1 Tax=Kockovaella imperatae TaxID=4999 RepID=A0A1Y1U9D4_9TREE)

HSP 1 Score: 50.8 bits (120), Expect = 5.010e-6
Identity = 19/44 (43.18%), Postives = 26/44 (59.09%), Query Frame = 1 
Query:    1 FSLQCFCGDATDDPTSLGSVTCSMSCTGDSAQNCGGVWALSLYE 132
            +  QCFCG++     +     CSM CTGD+ + CGG W L L+E
Sbjct:  337 YGAQCFCGNSVPTAITYNDTLCSMPCTGDATEMCGGEWGLDLFE 380
[Close]
BLAST of mRNA_H-elongata_contig179475.4758.1 vs. uniprot
Match: A0A2J6SY04_9HELO (WSC-domain-containing protein n=1 Tax=Hyaloscypha bicolor E TaxID=1095630 RepID=A0A2J6SY04_9HELO)

HSP 1 Score: 50.4 bits (119), Expect = 6.860e-6
Identity = 19/47 (40.43%), Postives = 33/47 (70.21%), Query Frame = 1 
Query:    1 FSLQCFCGDATDDPTSLGSVTCSMSCTGDSAQNCGGVWALSLYEFTS 141
            ++ QC+C ++   P++LG   CSM+CTG+SA+ CGG   +S++  T+
Sbjct: 1469 YASQCYCSNSMASPSALGQAGCSMACTGNSAETCGGSSRISMFNNTA 1515
[Close]
BLAST of mRNA_H-elongata_contig179475.4758.1 vs. uniprot
Match: A0A2J6Q9I7_9HELO (WSC-domain-containing protein n=1 Tax=Hyaloscypha hepaticicola TaxID=2082293 RepID=A0A2J6Q9I7_9HELO)

HSP 1 Score: 49.7 bits (117), Expect = 1.290e-5
Identity = 21/47 (44.68%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    1 FSLQCFCGDATDDPTSLGSVTCSMSCTGDSAQNCGGVWALSLYEFTS 141
            ++ QC+C ++    ++LG+  CSMSCTGD AQ CGG   +SL+  T+
Sbjct: 1477 YASQCYCANSIAPTSTLGNTGCSMSCTGDQAQICGGSARISLFNNTA 1523
[Close]
BLAST of mRNA_H-elongata_contig179475.4758.1 vs. uniprot
Match: A0A3M7MKF9_9EURO (Uncharacterized protein (Fragment) n=1 Tax=Chaetothyriales sp. CBS 132003 TaxID=2249419 RepID=A0A3M7MKF9_9EURO)

HSP 1 Score: 47.8 bits (112), Expect = 6.170e-5
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 FSLQCFCGDATD-DPTSLGSVTCSMSCTGDSAQNCGGVWALSLYEFTS 141
            +S +C+CG+    D TS     CSM+C+GDS + CGG   LSLYE T+
Sbjct: 1173 YSGECYCGNTLSADSTSASLTDCSMTCSGDSTEICGGPARLSLYENTA 1220
[Close]
BLAST of mRNA_H-elongata_contig179475.4758.1 vs. uniprot
Match: A0A8H4TTJ5_9HYPO (Uncharacterized protein n=1 Tax=Fusarium sarcochroum TaxID=1208366 RepID=A0A8H4TTJ5_9HYPO)

HSP 1 Score: 47.4 bits (111), Expect = 8.000e-5
Identity = 22/44 (50.00%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 FSLQCFCGDATDDP-TSLGSVTCSMSCTGDSAQNCGGVWALSLY 129
            F  QCFCG++ D+   ++   TC+  C GDSA NCGG  ALSL+
Sbjct:  228 FGSQCFCGNSIDNAGAAIAQSTCNKRCAGDSATNCGGPDALSLF 271
[Close]
BLAST of mRNA_H-elongata_contig179475.4758.1 vs. uniprot
Match: UPI001874BD84 (uncharacterized protein n=1 Tax=Colletotrichum truncatum TaxID=5467 RepID=UPI001874BD84)

HSP 1 Score: 47.4 bits (111), Expect = 8.430e-5
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    1 FSLQCFCGDATDDP-TSLGSVTCSMSCTGDSAQNCGGVWALSLY 129
            FS +C+CG A D   TS  +  CSM+C+G+S+Q+CGG   LSL+
Sbjct:  293 FSTECYCGMALDKASTSTAAAECSMACSGNSSQSCGGANRLSLF 336
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179475.4758.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A1Y1U9D4_9TREE5.010e-643.18Glycosyl hydrolase family 71-domain-containing pro... [more]
A0A2J6SY04_9HELO6.860e-640.43WSC-domain-containing protein n=1 Tax=Hyaloscypha ... [more]
A0A2J6Q9I7_9HELO1.290e-544.68WSC-domain-containing protein n=1 Tax=Hyaloscypha ... [more]
A0A3M7MKF9_9EURO6.170e-547.92Uncharacterized protein (Fragment) n=1 Tax=Chaetot... [more]
A0A8H4TTJ5_9HYPO8.000e-550.00Uncharacterized protein n=1 Tax=Fusarium sarcochro... [more]
UPI001874BD848.430e-550.00uncharacterized protein n=1 Tax=Colletotrichum tru... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179475contigH-elongata_contig179475:1016..1159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930035.7323875-CDS-H-elongata_contig179475:1015..11591622930035.7323875-CDS-H-elongata_contig179475:1015..1159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179475 1016..1159 +
1691679255.9707005-CDS-H-elongata_contig179475:1015..11591691679255.9707005-CDS-H-elongata_contig179475:1015..1159Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179475 1016..1159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179475.4758.1prot_H-elongata_contig179475.4758.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179475 1016..1159 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179475.4758.1

>prot_H-elongata_contig179475.4758.1 ID=prot_H-elongata_contig179475.4758.1|Name=mRNA_H-elongata_contig179475.4758.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=48bp
FSLQCFCGDATDDPTSLGSVTCSMSCTGDSAQNCGGVWALSLYEFTS*
back to top

mRNA from alignment at H-elongata_contig179475:1016..1159+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179475.4758.1 ID=mRNA_H-elongata_contig179475.4758.1|Name=mRNA_H-elongata_contig179475.4758.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=144bp|location=Sequence derived from alignment at H-elongata_contig179475:1016..1159+ (Himanthalia elongata Himel1 dioecious)
TTTTCTTTGCAGTGTTTTTGTGGAGACGCGACGGACGACCCCACTAGCCT
TGGCTCGGTGACGTGCAGCATGTCCTGCACTGGCGATTCAGCACAAAATT
GTGGCGGCGTCTGGGCTTTATCCTTGTATGAGTTCACATCTTGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig179475:1016..1159+

>mRNA_H-elongata_contig179475.4758.1 ID=mRNA_H-elongata_contig179475.4758.1|Name=mRNA_H-elongata_contig179475.4758.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=288bp|location=Sequence derived from alignment at H-elongata_contig179475:1016..1159+ (Himanthalia elongata Himel1 dioecious)
TTTTCTTTGCAGTGTTTTTGTGGAGACGCGACGGACGACCCCACTAGCCT
TGGCTCGGTGACGTGCAGCATGTCCTGCACTGGCGATTCAGCACAAAATT
GTGGCGGCGTCTGGGCTTTATCCTTGTATGAGTTCACATCTTGATTTTCT
TTGCAGTGTTTTTGTGGAGACGCGACGGACGACCCCACTAGCCTTGGCTC
GGTGACGTGCAGCATGTCCTGCACTGGCGATTCAGCACAAAATTGTGGCG
GCGTCTGGGCTTTATCCTTGTATGAGTTCACATCTTGA
back to top