mRNA_H-elongata_contig179405.4756.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179405.4756.1
Unique NamemRNA_H-elongata_contig179405.4756.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig179405.4756.1 vs. uniprot
Match: D7FVF0_ECTSI (Dnm1, dynamin-related GTPase involved in mitochondrial division n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVF0_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.000e-37
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 1 
Query:    1 MEDLIPVVNKLQDVFSAIGQSPIDLPQIVVIGSQSSGKSSVLENVVGRDFLPRGTGIVTRRPLVLQLYNTAGSTG 225
            MEDLIPVVNKLQDVFSAIGQ+PIDLPQIVVIGSQSSGKSSVLENVVGRDFLPRGTGIVTRRPL+LQLYNTAG+ G
Sbjct:    3 MEDLIPVVNKLQDVFSAIGQTPIDLPQIVVIGSQSSGKSSVLENVVGRDFLPRGTGIVTRRPLILQLYNTAGTMG 77
[Close]
BLAST of mRNA_H-elongata_contig179405.4756.1 vs. uniprot
Match: A0A662XU30_9STRA (Dynamin-type G domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XU30_9STRA)

HSP 1 Score: 129 bits (324), Expect = 8.320e-37
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = 1 
Query:    1 MEDLIPVVNKLQDVFSAIGQSPIDLPQIVVIGSQSSGKSSVLENVVGRDFLPRGTGIVTRRPLVLQLYNTAGS 219
            M+ LIP++NKLQDVFSAIGQSPI+LPQIVVIGSQSSGKSSVLEN+VG+DFLPRG+GIVTRRPLVLQLYNT  S
Sbjct:    1 MDQLIPIINKLQDVFSAIGQSPINLPQIVVIGSQSSGKSSVLENIVGKDFLPRGSGIVTRRPLVLQLYNTNAS 73
[Close]
BLAST of mRNA_H-elongata_contig179405.4756.1 vs. uniprot
Match: A0A836CKP3_9STRA (Dynamin central region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKP3_9STRA)

HSP 1 Score: 137 bits (345), Expect = 5.230e-36
Identity = 67/75 (89.33%), Postives = 72/75 (96.00%), Query Frame = 1 
Query:    1 MEDLIPVVNKLQDVFSAIGQSPIDLPQIVVIGSQSSGKSSVLENVVGRDFLPRGTGIVTRRPLVLQLYNTAGSTG 225
            M++LIP+VNKLQDVFSAIGQ PIDLPQIVVIGSQSSGKSSVLEN+VGRDFLPRGTGIVTRRPLVLQLYNT G+ G
Sbjct:    1 MDELIPIVNKLQDVFSAIGQPPIDLPQIVVIGSQSSGKSSVLENIVGRDFLPRGTGIVTRRPLVLQLYNTGGAAG 75
[Close]
BLAST of mRNA_H-elongata_contig179405.4756.1 vs. uniprot
Match: A0A2P4YQB7_9STRA (Dynamin-2 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YQB7_9STRA)

HSP 1 Score: 129 bits (323), Expect = 2.550e-35
Identity = 62/73 (84.93%), Postives = 71/73 (97.26%), Query Frame = 1 
Query:    1 MEDLIPVVNKLQDVFSAIGQSPIDLPQIVVIGSQSSGKSSVLENVVGRDFLPRGTGIVTRRPLVLQLYNTAGS 219
            M+ LIP++NKLQDVFSAIGQSPI+LPQIVVIGSQSSGKSSVLEN+VG+DFLPRG+GIVTRRPLVLQLYN++ S
Sbjct:    1 MDQLIPIINKLQDVFSAIGQSPINLPQIVVIGSQSSGKSSVLENIVGKDFLPRGSGIVTRRPLVLQLYNSSAS 73
[Close]
BLAST of mRNA_H-elongata_contig179405.4756.1 vs. uniprot
Match: A0A024TUW8_9STRA (Uncharacterized protein n=14 Tax=Aphanomyces TaxID=100860 RepID=A0A024TUW8_9STRA)

HSP 1 Score: 131 bits (330), Expect = 5.170e-34
Identity = 63/76 (82.89%), Postives = 71/76 (93.42%), Query Frame = 1 
Query:    1 MEDLIPVVNKLQDVFSAIGQSPIDLPQIVVIGSQSSGKSSVLENVVGRDFLPRGTGIVTRRPLVLQLYNTAGSTGK 228
            M+ LIP++NKLQDVFSAIGQSPI+LPQIVV+GSQSSGKSSVLEN+VG+DFLPRG+GIVTRRPLVLQLYNT G   K
Sbjct:    1 MDQLIPIINKLQDVFSAIGQSPINLPQIVVVGSQSSGKSSVLENIVGKDFLPRGSGIVTRRPLVLQLYNTDGGASK 76
[Close]
BLAST of mRNA_H-elongata_contig179405.4756.1 vs. uniprot
Match: A0A485KTM0_9STRA (Aste57867_11655 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KTM0_9STRA)

HSP 1 Score: 131 bits (330), Expect = 5.310e-34
Identity = 63/76 (82.89%), Postives = 71/76 (93.42%), Query Frame = 1 
Query:    1 MEDLIPVVNKLQDVFSAIGQSPIDLPQIVVIGSQSSGKSSVLENVVGRDFLPRGTGIVTRRPLVLQLYNTAGSTGK 228
            M+ LIP++NKLQDVFSAIGQSPI+LPQIVV+GSQSSGKSSVLEN+VG+DFLPRG+GIVTRRPLVLQLYNT G   K
Sbjct:    1 MDQLIPIINKLQDVFSAIGQSPINLPQIVVVGSQSSGKSSVLENIVGKDFLPRGSGIVTRRPLVLQLYNTDGGVSK 76
[Close]
BLAST of mRNA_H-elongata_contig179405.4756.1 vs. uniprot
Match: A0A6U4DF37_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DF37_9STRA)

HSP 1 Score: 131 bits (330), Expect = 5.620e-34
Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 MEDLIPVVNKLQDVFSAIGQSPIDLPQIVVIGSQSSGKSSVLENVVGRDFLPRGTGIVTRRPLVLQLYNTAGSTG 225
            M++LIPVVNKLQDVF+AIG SPIDLPQIVVIG+QSSGKSSVLENVVG DFLPRGTGIVTRRPL+LQL+NT+G  G
Sbjct:    1 MQNLIPVVNKLQDVFNAIGNSPIDLPQIVVIGAQSSGKSSVLENVVGEDFLPRGTGIVTRRPLILQLFNTSGEAG 75
[Close]
BLAST of mRNA_H-elongata_contig179405.4756.1 vs. uniprot
Match: A0A6U4DCU1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4DCU1_9STRA)

HSP 1 Score: 131 bits (330), Expect = 5.810e-34
Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 MEDLIPVVNKLQDVFSAIGQSPIDLPQIVVIGSQSSGKSSVLENVVGRDFLPRGTGIVTRRPLVLQLYNTAGSTG 225
            M++LIPVVNKLQDVF+AIG SPIDLPQIVVIG+QSSGKSSVLENVVG DFLPRGTGIVTRRPL+LQL+NT+G  G
Sbjct:    1 MQNLIPVVNKLQDVFNAIGNSPIDLPQIVVIGAQSSGKSSVLENVVGEDFLPRGTGIVTRRPLILQLFNTSGEAG 75
[Close]
BLAST of mRNA_H-elongata_contig179405.4756.1 vs. uniprot
Match: A0A2D4BI22_PYTIN (Dynamin-2 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BI22_PYTIN)

HSP 1 Score: 130 bits (327), Expect = 1.440e-33
Identity = 62/75 (82.67%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 MEDLIPVVNKLQDVFSAIGQSPIDLPQIVVIGSQSSGKSSVLENVVGRDFLPRGTGIVTRRPLVLQLYNTAGSTG 225
            ME LIP++NKLQDVFSAIGQSP++LPQIVVIGSQSSGKSSVLEN+VGRDFLPRG+GIVTRRPL+LQLYN +  +G
Sbjct:    1 MEQLIPIINKLQDVFSAIGQSPLNLPQIVVIGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLYNVSSPSG 75
[Close]
BLAST of mRNA_H-elongata_contig179405.4756.1 vs. uniprot
Match: A0A1R1PLQ2_ZANCU (Dynamin-related protein dnm1 n=1 Tax=Zancudomyces culisetae TaxID=1213189 RepID=A0A1R1PLQ2_ZANCU)

HSP 1 Score: 120 bits (300), Expect = 3.700e-33
Identity = 60/76 (78.95%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 MEDLIPVVNKLQDVFSAIGQSPIDLPQIVVIGSQSSGKSSVLENVVGRDFLPRGTGIVTRRPLVLQLYNTAGSTGK 228
            M+DLIP VNKLQ+VF+ +GQ  IDLPQIVV+GSQSSGKSSVLEN+VG DFLPRG GIVTRRPLVLQL N   STGK
Sbjct:    1 MDDLIPTVNKLQEVFNTLGQDQIDLPQIVVVGSQSSGKSSVLENLVGIDFLPRGVGIVTRRPLVLQLVNIPTSTGK 76
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179405.4756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVF0_ECTSI1.000e-3794.67Dnm1, dynamin-related GTPase involved in mitochond... [more]
A0A662XU30_9STRA8.320e-3786.30Dynamin-type G domain-containing protein (Fragment... [more]
A0A836CKP3_9STRA5.230e-3689.33Dynamin central region-domain-containing protein n... [more]
A0A2P4YQB7_9STRA2.550e-3584.93Dynamin-2 (Fragment) n=1 Tax=Phytophthora palmivor... [more]
A0A024TUW8_9STRA5.170e-3482.89Uncharacterized protein n=14 Tax=Aphanomyces TaxID... [more]
A0A485KTM0_9STRA5.310e-3482.89Aste57867_11655 protein n=1 Tax=Aphanomyces stella... [more]
A0A6U4DF37_9STRA5.620e-3485.33Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A6U4DCU1_9STRA5.810e-3485.33Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2D4BI22_PYTIN1.440e-3382.67Dynamin-2 n=1 Tax=Pythium insidiosum TaxID=114742 ... [more]
A0A1R1PLQ2_ZANCU3.700e-3378.95Dynamin-related protein dnm1 n=1 Tax=Zancudomyces ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179405contigH-elongata_contig179405:467..694 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue6.2e-32
Seed eggNOG ortholog2880.D7FVF0
Preferred nameDYN1
KEGG koko:K01528,ko:K17065
KEGG Pathwayko04072,ko04139,ko04144,ko04214,ko04217,ko04621,ko04668,ko04721,ko04961,ko05100,map04072,map04139,map04144,map04214,map04217,map04621,map04668,map04721,map04961,map05100
GOsGO:0000166,GO:0000266,GO:0000920,GO:0001882,GO:0001883,GO:0001891,GO:0003373,GO:0003374,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005515,GO:0005522,GO:0005525,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005886,GO:0006508,GO:0006807,GO:0006810,GO:0006873,GO:0006885,GO:0006897,GO:0006907,GO:0006909,GO:0006996,GO:0006997,GO:0007005,GO:0007010,GO:0007015,GO:0007032,GO:0007163,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008289,GO:0009653,GO:0009987,GO:0010256,GO:0010467,GO:0015631,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016485,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019538,GO:0019725,GO:0022607,GO:0030003,GO:0030004,GO:0030029,GO:0030036,GO:0030139,GO:0030587,GO:0030641,GO:0031090,GO:0031288,GO:0031410,GO:0031966,GO:0031967,GO:0031975,GO:0031982,GO:0032153,GO:0032154,GO:0032155,GO:0032502,GO:0032535,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0034622,GO:0035639,GO:0036094,GO:0042592,GO:0042802,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044656,GO:0045335,GO:0045851,GO:0048285,GO:0048311,GO:0048312,GO:0048856,GO:0048878,GO:0050801,GO:0051179,GO:0051234,GO:0051258,GO:0051301,GO:0051452,GO:0051453,GO:0051604,GO:0051640,GO:0051641,GO:0051646,GO:0051703,GO:0051704,GO:0055067,GO:0055080,GO:0055082,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0065008,GO:0071704,GO:0071840,GO:0071944,GO:0090066,GO:0090148,GO:0090382,GO:0090383,GO:0090702,GO:0097159,GO:0097204,GO:0097367,GO:0097435,GO:0097708,GO:0098590,GO:0098657,GO:0098771,GO:0099120,GO:1900756,GO:1901265,GO:1901363,GO:1901564
EggNOG free text desc.mitochondrial fission
EggNOG OGsCOG0699@1,KOG0446@2759
EC3.6.5.5
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03029,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size228
Cds size228
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930035.6450713-CDS-H-elongata_contig179405:466..6941622930035.6450713-CDS-H-elongata_contig179405:466..694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179405 467..694 +
1691679255.9470646-CDS-H-elongata_contig179405:466..6941691679255.9470646-CDS-H-elongata_contig179405:466..694Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179405 467..694 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179405.4756.1prot_H-elongata_contig179405.4756.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179405 467..694 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179405.4756.1

>prot_H-elongata_contig179405.4756.1 ID=prot_H-elongata_contig179405.4756.1|Name=mRNA_H-elongata_contig179405.4756.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=76bp
MEDLIPVVNKLQDVFSAIGQSPIDLPQIVVIGSQSSGKSSVLENVVGRDF
LPRGTGIVTRRPLVLQLYNTAGSTGK
back to top

mRNA from alignment at H-elongata_contig179405:467..694+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179405.4756.1 ID=mRNA_H-elongata_contig179405.4756.1|Name=mRNA_H-elongata_contig179405.4756.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=228bp|location=Sequence derived from alignment at H-elongata_contig179405:467..694+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGACCTCATTCCTGTCGTCAACAAGCTGCAGGACGTGTTCAGCGC
CATCGGCCAGTCGCCGATCGATCTTCCCCAGATCGTGGTCATTGGCTCCC
AGAGCTCTGGCAAGAGCAGCGTACTGGAGAACGTGGTCGGCCGGGACTTC
CTCCCGCGAGGCACGGGGATCGTTACCCGTCGGCCCCTGGTTCTCCAGCT
CTACAACACGGCCGGCTCCACGGGGAAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig179405:467..694+

>mRNA_H-elongata_contig179405.4756.1 ID=mRNA_H-elongata_contig179405.4756.1|Name=mRNA_H-elongata_contig179405.4756.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=456bp|location=Sequence derived from alignment at H-elongata_contig179405:467..694+ (Himanthalia elongata Himel1 dioecious)
ATGGAGGACCTCATTCCTGTCGTCAACAAGCTGCAGGACGTGTTCAGCGC
CATCGGCCAGTCGCCGATCGATCTTCCCCAGATCGTGGTCATTGGCTCCC
AGAGCTCTGGCAAGAGCAGCGTACTGGAGAACGTGGTCGGCCGGGACTTC
CTCCCGCGAGGCACGGGGATCGTTACCCGTCGGCCCCTGGTTCTCCAGCT
CTACAACACGGCCGGCTCCACGGGGAAGATGGAGGACCTCATTCCTGTCG
TCAACAAGCTGCAGGACGTGTTCAGCGCCATCGGCCAGTCGCCGATCGAT
CTTCCCCAGATCGTGGTCATTGGCTCCCAGAGCTCTGGCAAGAGCAGCGT
ACTGGAGAACGTGGTCGGCCGGGACTTCCTCCCGCGAGGCACGGGGATCG
TTACCCGTCGGCCCCTGGTTCTCCAGCTCTACAACACGGCCGGCTCCACG
GGGAAG
back to top