mRNA_H-elongata_contig179335.4755.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179335.4755.1
Unique NamemRNA_H-elongata_contig179335.4755.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179335.4755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179335contigH-elongata_contig179335:289..1015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size728
Cds size726
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930035.6135454-CDS-H-elongata_contig179335:288..10141622930035.6135454-CDS-H-elongata_contig179335:288..1014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179335 289..1014 +
1691679255.937338-CDS-H-elongata_contig179335:288..10141691679255.937338-CDS-H-elongata_contig179335:288..1014Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179335 289..1014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179335.4755.1prot_H-elongata_contig179335.4755.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179335 289..1014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179335.4755.1

>prot_H-elongata_contig179335.4755.1 ID=prot_H-elongata_contig179335.4755.1|Name=mRNA_H-elongata_contig179335.4755.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=242bp
VEGILSGGVVKPVVPTFGGKSENFLRFQHEITLLARRTGCDRIFTEPTQV
PQVSVGDTERSISDLNEQFGADVVRMHMNAWEILTISLKGEKDRDVLFRT
ASPSAAWMAIKQNHCPRTQGAALDLLSKLDNIRVRVTDDPTQKYLEMEST
ARFLRSYTDWQHLDESFLIGKFLNCLPAEYDVQKQMLEGRDDGMSREAVL
TTVQKRYESTDLKKHHRKGKQPEDQAFVATGKGRAGGADAQR
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mRNA from alignment at H-elongata_contig179335:289..1015+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179335.4755.1 ID=mRNA_H-elongata_contig179335.4755.1|Name=mRNA_H-elongata_contig179335.4755.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=727bp|location=Sequence derived from alignment at H-elongata_contig179335:289..1015+ (Himanthalia elongata Himel1 dioecious)
GTTGAGGGTATCTTATCGGGTGGGGTAGTAAAGCCTGTTGTCCCAACTTT
TGGAGGGAAGTCTGAAAATTTCCTGAGATTCCAGCACGAAATCACACTTC
TGGCTAGACGAACCGGCTGTGATCGGATTTTTACAGAGCCGACACAGGTA
CCTCAAGTTAGTGTAGGCGACACTGAGAGGTCTATTTCTGACTTGAATGA
ACAGTTTGGCGCAGATGTTGTTAGAATGCACATGAACGCATGGGAAATTC
TGACTATCAGCCTGAAAGGAGAGAAGGACAGGGATGTACTGTTTAGAACT
GCATCCCCCAGCGCTGCGTGGATGGCCATTAAGCAAAACCATTGCCCACG
AACACAGGGGGCCGCCCTAGATTTACTGTCAAAACTAGATAATATCCGAG
TGAGAGTCACTGACGACCCCACGCAAAAATATTTAGAAATGGAGAGCACC
GCCAGATTTTTGCGTTCATACACGGATTGGCAGCACCTGGACGAGTCGTT
TCTGATCGGAAAATTCCTCAATTGCCTTCCTGCCGAGTACGACGTCCAAA
AGCAGATGCTTGAAGGGCGAGACGATGGCATGTCCCGCGAAGCTGTTCTC
ACGACGGTGCAAAAGAGATATGAGTCCACGGACTTAAAAAAACACCACCG
TAAGGGAAAACAACCCGAGGACCAGGCGTTCGTCGCCACAGGGAAGGGCC
GCGCCGGCGGGGCCGACGCACAACGCC
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Coding sequence (CDS) from alignment at H-elongata_contig179335:289..1015+

>mRNA_H-elongata_contig179335.4755.1 ID=mRNA_H-elongata_contig179335.4755.1|Name=mRNA_H-elongata_contig179335.4755.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1452bp|location=Sequence derived from alignment at H-elongata_contig179335:289..1015+ (Himanthalia elongata Himel1 dioecious)
GTTGAGGGTATCTTATCGGGTGGGGTAGTAAAGCCTGTTGTCCCAACTTT
TGGAGGGAAGTCTGAAAATTTCCTGAGATTCCAGCACGAAATCACACTTC
TGGCTAGACGAACCGGCTGTGATCGGATTTTTACAGAGCCGACACAGGTA
CCTCAAGTTAGTGTAGGCGACACTGAGAGGTCTATTTCTGACTTGAATGA
ACAGTTTGGCGCAGATGTTGTTAGAATGCACATGAACGCATGGGAAATTC
TGACTATCAGCCTGAAAGGAGAGAAGGACAGGGATGTACTGTTTAGAACT
GCATCCCCCAGCGCTGCGTGGATGGCCATTAAGCAAAACCATTGCCCACG
AACACAGGGGGCCGCCCTAGATTTACTGTCAAAACTAGATAATATCCGAG
TGAGAGTCACTGACGACCCCACGCAAAAATATTTAGAAATGGAGAGCACC
GCCAGATTTTTGCGTTCATACACGGATTGGCAGCACCTGGACGAGTCGTT
TCTGATCGGAAAATTCCTCAATTGCCTTCCTGCCGAGTACGACGTCCAAA
AGCAGATGCTTGAAGGGCGAGACGATGGCATGTCCCGCGAAGCTGTTCTC
ACGACGGTGCAAAAGAGATATGAGTCCACGGACTTAAAAAAACACCACCG
TAAGGGAAAACAACCCGAGGACCAGGCGTTCGTCGCCACAGGGAAGGGCC
GCGCCGGCGGGGCCGACGCACAACGCGTTGAGGGTATCTTATCGGGTGGG
GTAGTAAAGCCTGTTGTCCCAACTTTTGGAGGGAAGTCTGAAAATTTCCT
GAGATTCCAGCACGAAATCACACTTCTGGCTAGACGAACCGGCTGTGATC
GGATTTTTACAGAGCCGACACAGGTACCTCAAGTTAGTGTAGGCGACACT
GAGAGGTCTATTTCTGACTTGAATGAACAGTTTGGCGCAGATGTTGTTAG
AATGCACATGAACGCATGGGAAATTCTGACTATCAGCCTGAAAGGAGAGA
AGGACAGGGATGTACTGTTTAGAACTGCATCCCCCAGCGCTGCGTGGATG
GCCATTAAGCAAAACCATTGCCCACGAACACAGGGGGCCGCCCTAGATTT
ACTGTCAAAACTAGATAATATCCGAGTGAGAGTCACTGACGACCCCACGC
AAAAATATTTAGAAATGGAGAGCACCGCCAGATTTTTGCGTTCATACACG
GATTGGCAGCACCTGGACGAGTCGTTTCTGATCGGAAAATTCCTCAATTG
CCTTCCTGCCGAGTACGACGTCCAAAAGCAGATGCTTGAAGGGCGAGACG
ATGGCATGTCCCGCGAAGCTGTTCTCACGACGGTGCAAAAGAGATATGAG
TCCACGGACTTAAAAAAACACCACCGTAAGGGAAAACAACCCGAGGACCA
GGCGTTCGTCGCCACAGGGAAGGGCCGCGCCGGCGGGGCCGACGCACAAC
GC
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