mRNA_H-elongata_contig179318.4753.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179318.4753.1
Unique NamemRNA_H-elongata_contig179318.4753.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig179318.4753.1 vs. uniprot
Match: A0A6H5KTN5_9PHAE (DJ-1_PfpI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTN5_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 7.510e-43
Identity = 68/90 (75.56%), Postives = 82/90 (91.11%), Query Frame = 1 
Query:    1 QVKCSRGVKIEADCKLAECESRNWDAVVCPGGMPGATNLKESEPLETILKKQADDGRIIAAICAAPAVVLAAHGLLEGKKATCYPSSAFR 270
            +V CSRGVKI+ADCK+AECE+R+WDAVVCPGGMPGA +LKE+E LE IL+KQ  +GRI+ AICAAPAVVLA+HGLLEGK+ATCYP+S F+
Sbjct:   96 EVTCSRGVKIKADCKIAECEARDWDAVVCPGGMPGAVSLKENETLEAILRKQNSEGRIVGAICAAPAVVLASHGLLEGKQATCYPASVFQ 185
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BLAST of mRNA_H-elongata_contig179318.4753.1 vs. uniprot
Match: A0A482RT38_9ARCH (DJ-1 family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RT38_9ARCH)

HSP 1 Score: 119 bits (298), Expect = 4.760e-32
Identity = 57/88 (64.77%), Postives = 67/88 (76.14%), Query Frame = 1 
Query:    4 VKCSRGVKIEADCKLAECESRNWDAVVCPGGMPGATNLKESEPLETILKKQADDGRIIAAICAAPAVVLAAHGLLEGKKATCYPSSAF 267
            V CSRGVKI ADC +++C +++WD +VCPGGMPGA +L ES  L  IL+K A D + IAAICAAPAVVLAAHG L  K ATCYP S F
Sbjct:   53 VTCSRGVKIVADCLISDCANKSWDMIVCPGGMPGAQHLSESHTLIEILQKHAHDNKFIAAICAAPAVVLAAHGFLTNKTATCYPVSKF 140
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BLAST of mRNA_H-elongata_contig179318.4753.1 vs. uniprot
Match: A0A2E2G076_9GAMM (DJ-1 family protein n=4 Tax=Oceanospirillales TaxID=135619 RepID=A0A2E2G076_9GAMM)

HSP 1 Score: 108 bits (271), Expect = 4.600e-28
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:    1 QVKCSRGVKIEADCKLAECESRNWDAVVCPGGMPGATNLKESEPLETILKKQADDGRIIAAICAAPAVVLAAHGLLEGKKATCYP 255
            +V+CSRGV++ AD  + EC + +WDA++ PGGMPGA NL ++E   ++LK+Q   G++IAAICAAP VVLA HGLLEGK AT YP
Sbjct:   42 EVECSRGVRLVADKLIGECVAEDWDAIMVPGGMPGAQNLSDNEAFVSLLKQQHSSGKLIAAICAAPYVVLACHGLLEGKSATAYP 126
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BLAST of mRNA_H-elongata_contig179318.4753.1 vs. uniprot
Match: A0A0G4IED0_9ALVE (DJ-1_PfpI domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4IED0_9ALVE)

HSP 1 Score: 107 bits (268), Expect = 1.340e-27
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = 1 
Query:    1 QVKCSRGVKIEADCKLAEC-ESRNWDAVVCPGGMPGATNLKESEPLETILKKQADDGRIIAAICAAPAVVLAAHGLLEGKKATCYPS 258
            QVK SRGV + AD  ++EC E   WD + CPGGMPGA +L++  PL  +LKKQ  +GRI AA+CA+PAVV  AHGLLEG+KAT YP+
Sbjct:   43 QVKASRGVGLVADALISECVEGHTWDLIACPGGMPGAEHLRDCAPLVDLLKKQKAEGRIYAAVCASPAVVFEAHGLLEGEKATSYPA 129
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BLAST of mRNA_H-elongata_contig179318.4753.1 vs. uniprot
Match: A0A2D5PGQ2_9GAMM (DJ-1_PfpI domain-containing protein n=1 Tax=Oceanospirillaceae bacterium TaxID=1899355 RepID=A0A2D5PGQ2_9GAMM)

HSP 1 Score: 107 bits (266), Expect = 2.680e-27
Identity = 45/85 (52.94%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    1 QVKCSRGVKIEADCKLAECESRNWDAVVCPGGMPGATNLKESEPLETILKKQADDGRIIAAICAAPAVVLAAHGLLEGKKATCYP 255
            Q+ C+ G KI AD  +++C+ + WDAV+ PGGMPGA +L ++     ++KKQ  D ++ AAICA+PAVV+A HG+L+GKKATCYP
Sbjct:   41 QITCANGTKITADAMISDCDGQQWDAVIAPGGMPGAEHLSDNAVFTGLMKKQLADNKVAAAICASPAVVMAKHGMLDGKKATCYP 125
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BLAST of mRNA_H-elongata_contig179318.4753.1 vs. uniprot
Match: A0A2E7JEW5_9GAMM (DJ-1_PfpI domain-containing protein n=1 Tax=Oceanospirillaceae bacterium TaxID=1899355 RepID=A0A2E7JEW5_9GAMM)

HSP 1 Score: 105 bits (263), Expect = 7.420e-27
Identity = 50/85 (58.82%), Postives = 62/85 (72.94%), Query Frame = 1 
Query:    1 QVKCSRGVKIEADCKLAECESRNWDAVVCPGGMPGATNLKESEPLETILKKQADDGRIIAAICAAPAVVLAAHGLLEGKKATCYP 255
            QV CSRGV++ AD  + EC    WDA++ PGGMPGA NL ++E   ++LK+Q +D + I AICAAP VVLA HGLLEGK AT YP
Sbjct:   42 QVTCSRGVQLVADVLMGECVDDEWDAILVPGGMPGAQNLSDNEAFVSLLKRQHEDRKTIGAICAAPYVVLACHGLLEGKSATAYP 126
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BLAST of mRNA_H-elongata_contig179318.4753.1 vs. uniprot
Match: A0A2R5GFP9_9STRA (Protein DJ-1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GFP9_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.320e-26
Identity = 53/87 (60.92%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:    4 VKCSRGVKIEADCKLAECESRNWDAVVCPGGMPGATNLKESEPLETILKKQADDGRIIAAICAAPAVVLAAHGLLEGKKATCYPSSA 264
            V CSRGV++EAD ++ E + + +D +VCPGGMPGATNL  SE L+  LK QA  G II AICAAPAVVLA  GLL+ K ATC+P  A
Sbjct:   45 VTCSRGVRVEADARIEEVQDKEFDIIVCPGGMPGATNLAASETLQGKLKAQAARGAIIGAICAAPAVVLAPLGLLDNKPATCHPGFA 131
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BLAST of mRNA_H-elongata_contig179318.4753.1 vs. uniprot
Match: A0A813HHP7_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HHP7_POLGL)

HSP 1 Score: 103 bits (258), Expect = 1.720e-26
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 QVKCSRGVKIEADCKLAECESRNWDAVVCPGGMPGATNLKESEPLETILKKQADDGRIIAAICAAPAVVLAAHGLLEGKKATCYPSSAFR 270
            QVK SRG+KI ADC + +C  + WDA+VCPGGMPGA +L++S  L  +LK+Q+   ++ AA+CA+PAVV + HGLL  + ATCYP+  F+
Sbjct:    5 QVKMSRGLKIVADCSIEDCAGKEWDAIVCPGGMPGAEHLRDSPALIELLKEQSKRSKVTAAMCASPAVVFSTHGLLP-ETATCYPNPKFK 93
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BLAST of mRNA_H-elongata_contig179318.4753.1 vs. uniprot
Match: A0A6S9E808_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9E808_HETAK)

HSP 1 Score: 105 bits (261), Expect = 2.390e-26
Identity = 46/90 (51.11%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 QVKCSRGVKIEADCKLAECESRNWDAVVCPGGMPGATNLKESEPLETILKKQADDGRIIAAICAAPAVVLAAHGLLEGKKATCYPSSAFR 270
            QV CSRGVK+ AD  +A+     +DA+ CPGG+PGA +L++   L  +L+ Q + GR++AA+CAAPAVVL  HGL+ G+ ATCYP+  F+
Sbjct:   63 QVTCSRGVKLVADKSIADAAGETYDAIACPGGLPGANHLRDDPTLRALLQAQNEAGRLVAAVCAAPAVVLQTHGLIAGRAATCYPADQFK 152
[Close]
BLAST of mRNA_H-elongata_contig179318.4753.1 vs. uniprot
Match: A0A813HFA6_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HFA6_POLGL)

HSP 1 Score: 103 bits (258), Expect = 4.320e-26
Identity = 48/90 (53.33%), Postives = 67/90 (74.44%), Query Frame = 1 
Query:    1 QVKCSRGVKIEADCKLAECESRNWDAVVCPGGMPGATNLKESEPLETILKKQADDGRIIAAICAAPAVVLAAHGLLEGKKATCYPSSAFR 270
            QVK SRG+KI ADC + +C  + WDA+VCPGGMPGA +L++S  L  +LK+Q+   ++ AA+CA+PAVV + HGLL  + ATCYP+  F+
Sbjct:   43 QVKMSRGLKIVADCSIEDCAGKEWDAIVCPGGMPGAEHLRDSPALIELLKEQSKRSKVTAAMCASPAVVFSTHGLLP-ETATCYPNPKFK 131
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179318.4753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTN5_9PHAE7.510e-4375.56DJ-1_PfpI domain-containing protein n=2 Tax=Ectoca... [more]
A0A482RT38_9ARCH4.760e-3264.77DJ-1 family protein n=1 Tax=archaeon TaxID=1906665... [more]
A0A2E2G076_9GAMM4.600e-2858.82DJ-1 family protein n=4 Tax=Oceanospirillales TaxI... [more]
A0A0G4IED0_9ALVE1.340e-2759.77DJ-1_PfpI domain-containing protein n=1 Tax=Chrome... [more]
A0A2D5PGQ2_9GAMM2.680e-2752.94DJ-1_PfpI domain-containing protein n=1 Tax=Oceano... [more]
A0A2E7JEW5_9GAMM7.420e-2758.82DJ-1_PfpI domain-containing protein n=1 Tax=Oceano... [more]
A0A2R5GFP9_9STRA1.320e-2660.92Protein DJ-1 n=1 Tax=Hondaea fermentalgiana TaxID=... [more]
A0A813HHP7_POLGL1.720e-2653.33Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A6S9E808_HETAK2.390e-2651.11Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A813HFA6_POLGL4.320e-2653.33Hypothetical protein n=2 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179318contigH-elongata_contig179318:129..603 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score148.3
Seed ortholog evalue1.7e-33
Seed eggNOG ortholog2880.D7FQJ0
KEGG koko:K03152
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005911,GO:0006081,GO:0006082,GO:0006089,GO:0006457,GO:0006464,GO:0006517,GO:0006807,GO:0006950,GO:0006979,GO:0006996,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009100,GO:0009266,GO:0009408,GO:0009438,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009657,GO:0009658,GO:0009987,GO:0010035,GO:0010038,GO:0016020,GO:0016043,GO:0016053,GO:0016829,GO:0016835,GO:0016836,GO:0019172,GO:0019249,GO:0019538,GO:0019752,GO:0022613,GO:0030054,GO:0030091,GO:0031090,GO:0032787,GO:0033554,GO:0034599,GO:0036211,GO:0036524,GO:0036525,GO:0042026,GO:0042180,GO:0042182,GO:0042221,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0046185,GO:0046394,GO:0046686,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051596,GO:0051716,GO:0055044,GO:0061727,GO:0065007,GO:0070887,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0080134,GO:0080135,GO:0098588,GO:0098805,GO:0140096,GO:1900407,GO:1900409,GO:1901135,GO:1901564,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1902882,GO:1902884
EggNOG free text desc.guanine deglycation, methylglyoxal removal
EggNOG OGsCOG0693@1,KOG2764@2759
EC3.5.1.124
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Ec32 ortholog description4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative
Ec32 orthologEc-01_008860.1
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930035.522577-CDS-H-elongata_contig179318:128..2421622930035.522577-CDS-H-elongata_contig179318:128..242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179318 129..242 -
1691679255.902532-CDS-H-elongata_contig179318:128..2421691679255.902532-CDS-H-elongata_contig179318:128..242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179318 129..242 -
1622930035.5433578-CDS-H-elongata_contig179318:447..6031622930035.5433578-CDS-H-elongata_contig179318:447..603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179318 448..603 -
1691679255.9191685-CDS-H-elongata_contig179318:447..6031691679255.9191685-CDS-H-elongata_contig179318:447..603Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179318 448..603 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179318.4753.1prot_H-elongata_contig179318.4753.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179318 129..603 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179318.4753.1

>prot_H-elongata_contig179318.4753.1 ID=prot_H-elongata_contig179318.4753.1|Name=mRNA_H-elongata_contig179318.4753.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
QVKCSRGVKIEADCKLAECESRNWDAVVCPGGMPGATNLKESEPLETILK
KQADDGRIIAAICAAPAVVLAAHGLLEGKKATCYPSSAFR
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mRNA from alignment at H-elongata_contig179318:129..603-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179318.4753.1 ID=mRNA_H-elongata_contig179318.4753.1|Name=mRNA_H-elongata_contig179318.4753.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=475bp|location=Sequence derived from alignment at H-elongata_contig179318:129..603- (Himanthalia elongata Himel1 dioecious)
CAGGTGAAATGCTCGCGAGGGGTCAAGATTGAAGCGGACTGCAAGCTCGC
CGAGTGCGAGTCTCGCAACTGGGACGCGGTCGTATGTCCCGGGGGCATGC
CCGGTGCCACGAACCTGAAGGAGAGCGAGCCCCTAGAAACCATTCTTAAG
AAACAGGTAATAATTTTCCCCTCGCCATGGCGACCACAGAATAACGGCGC
TGCTGTTCCTCCCGCGACTACCGTCAATTGGCGCCGCAAAGCATGCCCTT
TTGATGACGAAACCGCAAAATTGTGAGTAATTTTGCACGATACAATACGA
GTTCATTTAAAAAATAAAATAAAAATACAGTAGCTGAATCATCCTTCCGT
CGCACCTCCAGGCTGACGACGGAAGGATCATCGCCGCTATTTGCGCCGCC
CCCGCGGTGGTGCTTGCCGCGCATGGGCTTCTGGAAGGGAAGAAGGCAAC
CTGCTATCCCTCAAGCGCGTTCAGA
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Coding sequence (CDS) from alignment at H-elongata_contig179318:129..603-

>mRNA_H-elongata_contig179318.4753.1 ID=mRNA_H-elongata_contig179318.4753.1|Name=mRNA_H-elongata_contig179318.4753.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig179318:129..603- (Himanthalia elongata Himel1 dioecious)
CAGGTGAAATGCTCGCGAGGGGTCAAGATTGAAGCGGACTGCAAGCTCGC
CGAGTGCGAGTCTCGCAACTGGGACGCGGTCGTATGTCCCGGGGGCATGC
CCGGTGCCACGAACCTGAAGGAGAGCGAGCCCCTAGAAACCATTCTTAAG
AAACAGCAGGTGAAATGCTCGCGAGGGGTCAAGATTGAAGCGGACTGCAA
GCTCGCCGAGTGCGAGTCTCGCAACTGGGACGCGGTCGTATGTCCCGGGG
GCATGCCCGGTGCCACGAACCTGAAGGAGAGCGAGCCCCTAGAAACCATT
CTTAAGAAACAGGCTGACGACGGAAGGATCATCGCCGCTATTTGCGCCGC
CCCCGCGGTGGTGCTTGCCGCGCATGGGCTTCTGGAAGGGAAGAAGGCAA
CCTGCTATCCCTCAAGCGCGTTCAGAGCTGACGACGGAAGGATCATCGCC
GCTATTTGCGCCGCCCCCGCGGTGGTGCTTGCCGCGCATGGGCTTCTGGA
AGGGAAGAAGGCAACCTGCTATCCCTCAAGCGCGTTCAGA
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