prot_H-elongata_contig179290.4752.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig179290.4752.1
Unique Nameprot_H-elongata_contig179290.4752.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length156
Homology
BLAST of mRNA_H-elongata_contig179290.4752.1 vs. uniprot
Match: A0A151RGT1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151RGT1_CAJCA)

HSP 1 Score: 116 bits (291), Expect = 3.050e-29
Identity = 54/145 (37.24%), Postives = 90/145 (62.07%), Query Frame = 0
Query:   13 WKRAIAHEMDGQTARGVWQVVERPKGKRVLGTRVVFMRKIDKDGGIEKYKCRLVAQGFRKVKGIHYEESSSPTPAQAIIRMVLSMITALGWETRQLDVDMACLEADVEEEIYVELPEAYR--DSRKQVGLLRKAMYELVHAGLLW 155
            W +A+  EM+       W++V++P+ K+ +G R +F  K   DG IE+YK RLVA+G+ +  GI Y+E+ +P      +R+VL++    GW+  QLDV  A L  ++EEE+Y+E+P+ ++  + R +V LL+KA+Y L  +   W
Sbjct:    6 WTQAMKEEMNALERNSTWEIVDKPRDKKAIGCRWIFTVKHKADGTIERYKARLVAKGYTQTYGIDYKETFAPVAKMNTVRVVLALTAHFGWDLHQLDVKSAFLHGNLEEEVYMEIPQGFKVQNERNKVCLLKKALYGLTQSLRAW 150          
BLAST of mRNA_H-elongata_contig179290.4752.1 vs. uniprot
Match: A0A1M2V8C6_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trametes pubescens TaxID=154538 RepID=A0A1M2V8C6_TRAPU)

HSP 1 Score: 120 bits (300), Expect = 1.650e-28
Identity = 63/155 (40.65%), Postives = 92/155 (59.35%), Query Frame = 0
Query:    3 EAQASSEWPQWKRAIAHEMDGQTARGVWQVVERPKGKRVLGTRVVFMRKIDKDGGIEKYKCRLVAQGFRKVKGIHYEESSSPTPAQAIIRMVLSMITALGWETRQLDVDMACLEADVEEEIYVELPE--AYRDSRKQVGLLRKAMYELVHAGLLW 155
            EAQ + +WP+W+ AI  EMD   A   + +V RP G  V+G+R+VF RK D DG I++ K R+VAQGF ++ G+ Y E+ +P    + +R++L++     W   QLDV  A L  D++EEIY+  P   A +     V  LRK++Y L  AG  W
Sbjct:  993 EAQEAPDWPKWEEAITVEMDNLRAHSTYDLVVRPVGAHVIGSRLVFHRKRDADGSIKQCKVRVVAQGFGQIPGVDYNETFAPVAKSSSLRIMLALAARFSWPLIQLDVKSAYLNGDLDEEIYMRQPPGTAAQGEEHLVCRLRKSLYGLKQAGRAW 1147          
BLAST of mRNA_H-elongata_contig179290.4752.1 vs. uniprot
Match: A0A5K1K0E1_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ganoderma boninense TaxID=34458 RepID=A0A5K1K0E1_9APHY)

HSP 1 Score: 119 bits (297), Expect = 3.950e-28
Identity = 60/155 (38.71%), Postives = 96/155 (61.94%), Query Frame = 0
Query:    3 EAQASSEWPQWKRAIAHEMDGQTARGVWQVVERPKGKRVLGTRVVFMRKIDKDGGIEKYKCRLVAQGFRKVKGIHYEESSSPTPAQAIIRMVLSMITALGWETRQLDVDMACLEADVEEEIYVELPEAYRDSRKQ--VGLLRKAMYELVHAGLLW 155
            EAQAS +WPQW+RAI  EM+   A G + +V +P G  V+G+++VF RK + +G + + K R+VAQGF ++ GI + E+ +P    + +R+++++    GW   QLDV  A L  D++EEIY+  P     + ++  V  L+K++Y L  AG  W
Sbjct:  327 EAQASPDWPQWERAIEVEMENLRAHGTYDLVVKPPGAHVIGSKLVFHRKRNAEGAVTQCKVRVVAQGFAQIPGIDFNETFAPVAKPSSLRVMIALAARFGWPMIQLDVKSAYLNGDLDEEIYMRQPPGTAAAGEEHLVCRLKKSLYGLKQAGRAW 481          
BLAST of mRNA_H-elongata_contig179290.4752.1 vs. uniprot
Match: A0A438E4T4_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4T4_VITVI)

HSP 1 Score: 117 bits (292), Expect = 1.910e-27
Identity = 56/144 (38.89%), Postives = 90/144 (62.50%), Query Frame = 0
Query:   13 WKRAIAHEMDGQTARGVWQVVERPKGKRVLGTRVVFMRKIDKDGGIEKYKCRLVAQGFRKVKGIHYEESSSPTPAQAIIRMVLSMITALGWETRQLDVDMACLEADVEEEIYVELPEAYRDSRK-QVGLLRKAMYELVHAGLLW 155
            W+ A+A E++       W+VV+ P  K+ +G + ++  K + DG IE+YK RLVAQGF +++GI Y+E  SP      +R  L+++ A  WE  Q+DV+ A L  D+EEE+Y++LPE ++ + K +V  L+K++Y L  A   W
Sbjct:  565 WREAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEMFSPVAKMTSVRWFLAVVVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 708          
BLAST of mRNA_H-elongata_contig179290.4752.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 116 bits (290), Expect = 2.650e-27
Identity = 56/144 (38.89%), Postives = 90/144 (62.50%), Query Frame = 0
Query:   13 WKRAIAHEMDGQTARGVWQVVERPKGKRVLGTRVVFMRKIDKDGGIEKYKCRLVAQGFRKVKGIHYEESSSPTPAQAIIRMVLSMITALGWETRQLDVDMACLEADVEEEIYVELPEAYRDSRK-QVGLLRKAMYELVHAGLLW 155
            W+ A+A E++       W+VV+ P  K+ +G + ++  K + DG IE+YK RLVAQGF +++GI Y+E+ SP      +R  L++  A  WE  Q+DV+ A L  D+EEE+Y++LPE ++ + K +V  L+K++Y L  A   W
Sbjct:   96 WREAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 239          
BLAST of mRNA_H-elongata_contig179290.4752.1 vs. uniprot
Match: A0A5C3E5T1_9BASI (Uncharacterized protein n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3E5T1_9BASI)

HSP 1 Score: 116 bits (291), Expect = 2.660e-27
Identity = 59/153 (38.56%), Postives = 90/153 (58.82%), Query Frame = 0
Query:    3 EAQASSEWPQWKRAIAHEMDGQTARGVWQVVERPKGKRVLGTRVVFMRKIDKDGGIEKYKCRLVAQGFRKVKGIHYEESSSPTPAQAIIRMVLSMITALGWETRQLDVDMACLEADVEEEIYVELPEAYRDSRKQVGLLRKAMYELVHAGLLW 155
            EA+   +WP W+ AI  E+   +  G W + + P G+R +G++ VF  K+  DG ++KYK RLVAQGF +  G+ Y+E+ +P    A +R+++++    GW   Q+DV  A L  ++EEEIY+  P  Y +  K V  L KA+Y L  AG  W
Sbjct:  835 EAKRRPDWPHWETAIKKELASLSENGTWTLEDLPPGRRAVGSKWVFKIKLKADGTVDKYKARLVAQGFTQQHGVDYDETFAPVLKFATLRLLIALAAQEGWLAHQMDVITAYLNGNLEEEIYMRAPPGYAEGDK-VCRLCKALYGLKQAGRTW 986          
BLAST of mRNA_H-elongata_contig179290.4752.1 vs. uniprot
Match: A5BCC7_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5BCC7_VITVI)

HSP 1 Score: 115 bits (288), Expect = 6.720e-27
Identity = 56/144 (38.89%), Postives = 89/144 (61.81%), Query Frame = 0
Query:   13 WKRAIAHEMDGQTARGVWQVVERPKGKRVLGTRVVFMRKIDKDGGIEKYKCRLVAQGFRKVKGIHYEESSSPTPAQAIIRMVLSMITALGWETRQLDVDMACLEADVEEEIYVELPEAYRDSRK-QVGLLRKAMYELVHAGLLW 155
            W+ A+A E++       W+VV+ P  K+ +G + ++  K + DG IE+YK RLVAQGF +++GI Y+E  SP      +R  L++  A  WE  Q+DV+ A L  D+EEE+Y++LPE ++ + K +V  L+K++Y L  A   W
Sbjct:  819 WREAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQW 962          
BLAST of mRNA_H-elongata_contig179290.4752.1 vs. uniprot
Match: A0A392NJT6_9FABA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392NJT6_9FABA)

HSP 1 Score: 110 bits (274), Expect = 1.690e-26
Identity = 55/146 (37.67%), Postives = 84/146 (57.53%), Query Frame = 0
Query:   11 PQWKRAIAHEMDGQTARGVWQVVERPKGKRVLGTRVVFMRKIDKDGGIEKYKCRLVAQGFRKVKGIHYEESSSPTPAQAIIRMVLSMITALGWETRQLDVDMACLEADVEEEIYVELPEAYRDSRK-QVGLLRKAMYELVHAGLLW 155
            P+W+ A+A E+      G W +   P GK+++G R V+  K    G IEKYK RLVA+G+ +V+G  + E+ +P      +R +L++  A GWE  Q+DV  A L  D+EEE+Y+++P  Y   +   V  LRK++Y L  A   W
Sbjct:   51 PEWQEAMAIELKALEENGTWDLTLPPPGKKIVGCRWVYKVKYKASGEIEKYKARLVAKGYTQVEGEDFNETFAPVAKMTTVRCLLTVAVAKGWELHQMDVSNAFLHGDLEEEVYMQVPNGYDTPKAGMVCRLRKSLYGLKQASRNW 196          
BLAST of mRNA_H-elongata_contig179290.4752.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 114 bits (285), Expect = 1.720e-26
Identity = 57/153 (37.25%), Postives = 93/153 (60.78%), Query Frame = 0
Query:    3 EAQASSEWPQWKRAIAHEMDGQTARGVWQVVERPKGKRVLGTRVVFMRKIDKDGGIEKYKCRLVAQGFRKVKGIHYEESSSPTPAQAIIRMVLSMITALGWETRQLDVDMACLEADVEEEIYVELPEAYRDSRKQVGLLRKAMYELVHAGLLW 155
            +A +  +  +W++A   E++     GV++ V RP+ ++++G++ VF  K   DG +EKYK RLVAQGF +V+GI Y E+ +P      IR++L++     WE  Q+DV  A L  ++EEEIY+++P  ++ S   V  L+KA+Y L  A   W
Sbjct: 1000 DAMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREW 1152          
BLAST of mRNA_H-elongata_contig179290.4752.1 vs. uniprot
Match: A0A438FT54_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FT54_VITVI)

HSP 1 Score: 112 bits (281), Expect = 3.890e-26
Identity = 56/145 (38.62%), Postives = 86/145 (59.31%), Query Frame = 0
Query:   13 WKRAIAHEMDGQTARGVWQVVERPKGKRVLGTRVVFMRKIDKDGGIEKYKCRLVAQGFRKVKGIHYEESSSPTPAQAIIRMVLSMITALGWETRQLDVDMACLEADVEEEIYVELPEAY--RDSRKQVGLLRKAMYELVHAGLLW 155
            W +A+  E+        W++VE PKG++ +G + V+  K++KDGG++KYK RLVA+G+++  G+ Y+E  +P      IR+VLSM     W   QLDV  A L  ++EEE+Y++ P  Y  +    QV  L+KA+Y L  A   W
Sbjct:   40 WHKAMNEEIGSIEKNNSWELVELPKGQKSIGVKWVYKTKLNKDGGVDKYKARLVAKGYKQEFGVDYKEVFAPVAKLDTIRLVLSMAAQNSWSIHQLDVKSAFLHGELEEEVYIDQPPGYVKQGYENQVYKLKKALYGLKQAPRAW 184          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179290.4752.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151RGT1_CAJCA3.050e-2937.24Retrovirus-related Pol polyprotein from transposon... [more]
A0A1M2V8C6_TRAPU1.650e-2840.65Retrovirus-related Pol polyprotein from transposon... [more]
A0A5K1K0E1_9APHY3.950e-2838.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438E4T4_VITVI1.910e-2738.89Retrovirus-related Pol polyprotein from transposon... [more]
A0A438GNV2_VITVI2.650e-2738.89Retrovirus-related Pol polyprotein from transposon... [more]
A0A5C3E5T1_9BASI2.660e-2738.56Uncharacterized protein n=2 Tax=Ustilago trichopho... [more]
A5BCC7_VITVI6.720e-2738.89Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A392NJT6_9FABA1.690e-2637.67Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0C2WN23_AMAMK1.720e-2637.25Integrase catalytic domain-containing protein (Fra... [more]
A0A438FT54_VITVI3.890e-2638.62Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 29..155
e-value: 6.7E-29
score: 101.2
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 6..148
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 6..148

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179290contigH-elongata_contig179290:307..774 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179290.4752.1mRNA_H-elongata_contig179290.4752.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig179290 268..1284 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig179290.4752.1 ID=prot_H-elongata_contig179290.4752.1|Name=mRNA_H-elongata_contig179290.4752.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=156bp
MGEAQASSEWPQWKRAIAHEMDGQTARGVWQVVERPKGKRVLGTRVVFMR
KIDKDGGIEKYKCRLVAQGFRKVKGIHYEESSSPTPAQAIIRMVLSMITA
LGWETRQLDVDMACLEADVEEEIYVELPEAYRDSRKQVGLLRKAMYELVH
AGLLW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like