mRNA_H-elongata_contig17923.4747.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17923.4747.1
Unique NamemRNA_H-elongata_contig17923.4747.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17923.4747.1 vs. uniprot
Match: D8LSD1_ECTSI (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD1_ECTSI)

HSP 1 Score: 382 bits (982), Expect = 7.630e-120
Identity = 209/305 (68.52%), Postives = 244/305 (80.00%), Query Frame = 3 
Query:  423 SNDGCGCSYVGLSALIKRLNARWLLLLMGVTVRAEGLEEPRRLLSRPAMLLFAHVSTLDAMIILGTFPRAMCAVVKEELFALPFIGWVMASHGGIPINRSDRASAVQALAKAAARARELKLFVAMAPEGTRSKTGQLGPFKKGALHMQEQLQWPVIPVTIHGAYELFPLKTYFNECGRVVVRFHSPIEAADIKSREGLKQRLRQEMLDAVEVE-TPQAGSALGPSRRAASTAATALTYFLTAHAAKSLTILCRREGLAVWTLIAGTCAYIAVSTLFVYFVYARKCFSSTGSRRKASTIKGVRDGG 1334
            SN G G S  GLS+++ RL+  WLLLLMG+ VRAE + E    LSRPAMLLF HVSTLDA++ILGT PRA+CAVVKEEL A+P +GW+MAS G IPINR  RASAVQALA+AA RAREL++FVAMAPEGTRSKTGQLGPFKKGA HMQEQLQWPVIPVTIHGAYELFPLK   N+CG+VVV++H PIEAA+IKSREGL QRLRQE+L+A++ +  P+AG+AL PSRRAAS AATA TY   A A K+L    RREG+AVW L+AG  AY+ +ST+FV++VYARKCFS       A    GVR GG
Sbjct:  118 SNGGAGNSG-GLSSILIRLDCAWLLLLMGIQVRAEFMGES---LSRPAMLLFTHVSTLDAVVILGTLPRALCAVVKEELLAVPVLGWIMASRGAIPINRGHRASAVQALAEAAERARELQMFVAMAPEGTRSKTGQLGPFKKGAFHMQEQLQWPVIPVTIHGAYELFPLKWNVNQCGKVVVKYHRPIEAAEIKSREGLSQRLRQEILEALDQDDVPEAGAALDPSRRAASLAATAFTYLAAARAVKALVSFSRREGVAVWALVAGAVAYVFLSTVFVFYVYARKCFS-------APRRVGVRGGG 411
[Close]
BLAST of mRNA_H-elongata_contig17923.4747.1 vs. uniprot
Match: A0A6H5L1M9_9PHAE (PlsC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1M9_9PHAE)

HSP 1 Score: 297 bits (761), Expect = 3.780e-88
Identity = 197/442 (44.57%), Postives = 237/442 (53.62%), Query Frame = 3 
Query:    9 RREVEALAGTLVLRPVQRKPWPLFKAVDFLWRAPATFCFVVFLAFVVSIPLILLNMAERQIFSLFQRRRKKRLRLKARPDGGDSCHGNGTVTPEPSHINPILSTPKPKAEEDVAAAIGRDINGGSGAVSDDADASSSESNDGCGCSYVGLSALIKRLNARWLLLLMGVTVRAEGLEEPRRLLSRPAMLLFAHVSTLDAMIILGTFPRAMCAVVKEELFALPFIGWVMASHGGIPINRSDRASAVQALAKAAARARELKLFVAMAPEGTRSKTGQLGPFKKGALHMQEQLQWPVIPVTIHGAYELFPLKTYFNECGRVVVRFHSPIEAADIKSREGLKQRLRQEMLDAVEVETPQAGSALGPSRRAASTAATALTYFLTAHAAKSLTILCRREGLAVWTLIAGTCAYIAVSTLFVYFVYARKCFSSTGSRRKASTIKGVRDGG 1334
            +RE++ALA TLV+RPVQ K  PL +A+D +WR PA   F++F+ FVVSIPLI+L M E+QIF                                                          +NGGS              N G G S  GLS+++ RL+  WLLLLMG+ VRAE + E    LSRPAMLLF HVSTLDA++ILGT PRA+CAVVKEEL A+P +GW+MAS G IPINR  RASAVQ                                   GA HMQEQLQWPVIPVTIHGAYELFPLK   N+CG+ +      +EA D                   +   P+AG+AL PSRRAAS AATA TY   A A K+L    RREG+AVW L+AG  AY+ +ST+FV++VYARKCFS       A    GVR GG
Sbjct:   69 QRELDALASTLVVRPVQPKCRPLLEALDLIWRVPAVMLFLLFMGFVVSIPLIMLTMVEQQIFLA--------------------------------------------------------LNGGS--------------NGGAGNSG-GLSSILIRLDCAWLLLLMGIQVRAEFMGES---LSRPAMLLFTHVSTLDAVVILGTLPRALCAVVKEELLAVPVLGWIMASRGAIPINRGHRASAVQ-----------------------------------GAFHMQEQLQWPVIPVTIHGAYELFPLKWNVNQCGKEI------LEALD-------------------QANVPEAGAALDPSRRAASLAATAFTYLAAARAGKALVSFSRREGVAVWALVAGAVAYVFLSTVFVFYVYARKCFS-------APRRVGVRGGG 369
[Close]
BLAST of mRNA_H-elongata_contig17923.4747.1 vs. uniprot
Match: A0A835YU14_9STRA (PlsC domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU14_9STRA)

HSP 1 Score: 154 bits (389), Expect = 9.380e-37
Identity = 80/194 (41.24%), Postives = 123/194 (63.40%), Query Frame = 3 
Query:  432 GCGCSYVGLSALIKRLNARWLLLLMGVTVRAEGLE-EPRRLLSRPAMLLFAHVSTLDAMIILGTFPRAMCAVVKEELFALPFIGWVMASHGGIPINRSDRASAVQALAKAAARARELKLFVAMAPEGTRSKTGQLGPFKKGALHMQEQLQWPVIPVTIHGAYELFPLKT-----YFNECGRVVVRFHSPIEAAD 995
            G G  +  LS   KR+ A+W+LL+ GV VR EG   E +    +PA+++F H S LD +I+L   P    A+VK  +FA+P++GW+  + G +PI+RS R +AV ++  A    + +   +A++PEGTRS+TGQL PFKKGA H+ +QL+WP++P+TIHGA+ L+P +       +   G V VR+H+ I   +
Sbjct:   21 GLGPPFPRLSTGAKRILAQWMLLVTGVRVRVEGRGGEFKERFQKPALIMFTHASNLDPLIMLSAHPCGFRAIVKHSIFAVPYLGWLAMAFGCVPIDRSRRDAAVASMTAAGEECQRVGYSLAVSPEGTRSRTGQLRPFKKGAFHLAQQLRWPMLPLTIHGAFALWPPRAARAGALYARPGTVGVRYHALIRVGE 214
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BLAST of mRNA_H-elongata_contig17923.4747.1 vs. uniprot
Match: A0A2W0A808_9BACT (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2W0A808_9BACT)

HSP 1 Score: 118 bits (295), Expect = 1.200e-26
Identity = 72/175 (41.14%), Postives = 97/175 (55.43%), Query Frame = 3 
Query:  507 GVTVRAEGLEEPRRLLSRPAMLLFAHVSTLDAMIILGTFPRAMCAVVKEELFALPFIGWVMASHGGIPINRSDRASAVQALAKAAARARELKLFVAMAPEGTRSKTGQLGPFKKGALHMQEQLQWPVIPVTIHGAYELFPLKTYFNECGRVVVRFHSPIEAADIKSREGLKQRLR 1031
            GV V  EG EE  R  SR  + +  HVS LDA I++   P     +VK+ELF +P +GW M     +P++RSDR SA+  + KAA +  +  L + + PEGTRS  G L PFKKG  H+      PV+PVTI G+ E+ P        G   V FH PI+ A  K R+ L + +R
Sbjct:   12 GVKVETEGREELER--SRSCIFMCNHVSNLDAPIVVPVLPGRTSILVKKELFRIPILGWAMRMASLVPVDRSDRDSAISNIEKAA-KVMKSGLHMMIYPEGTRSTDGGLLPFKKGPFHLALNTGIPVVPVTILGSLEMMPKGKTRIRAGIARVIFHQPIDPARFKDRDELIEAVR 183
[Close]
BLAST of mRNA_H-elongata_contig17923.4747.1 vs. uniprot
Match: A0A6N8ZET9_9GAMM (1-acyl-sn-glycerol-3-phosphate acyltransferase n=3 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6N8ZET9_9GAMM)

HSP 1 Score: 117 bits (294), Expect = 1.300e-25
Identity = 83/222 (37.39%), Postives = 119/222 (53.60%), Query Frame = 3 
Query:  435 CGCSYVGLSALIKRLNARWLLLLMGVTVRAEGLE--EPRRLLSRPAMLLFAHVSTLDAMIILGTFPRAMCAVVKEELFALPFIGWVMASHGGIPINRSDRASAVQALAKAAARARELKLFVAMAPEGTRSKTGQLGPFKKGALHMQEQLQWPVIPVTIHGAYELFPLKTYFNECGRVVVRFHSPIEAADI--KSREGLKQRLRQEMLDAVEVETP-QAGSAL 1085
            CG    G SA++ R          GVTV + GL+  +PRR      +++  H S  D + +  TFP ++  V KEEL ++P  G  +   G I I+R +R SA+++L +AA R RE  L V M  EGTRS TG+L PFKKGA  +  + + PV+PV + G+  + P  +Y    G + VR   PIE  D+    R  L+ R RQ + D +   +P QA  AL
Sbjct:   36 CGHWAQGWSAVLLRA--------AGVTVTSTGLDRVDPRR----SQIVVSNHQSWFDVLALFATFPTSLRFVAKEELRSVPVFGKAILRCGHIAIDRRNRHSAIESLQRAARRLRERTLHVVMFAEGTRSPTGELQPFKKGAFVLALETRTPVLPVAVVGSRAVMPKHSYAIRSGEIEVRVGEPIEVGDLTMSDRNALRDRARQAVADLIAGPSPGQADGAL 245
[Close]
BLAST of mRNA_H-elongata_contig17923.4747.1 vs. uniprot
Match: A0A4D9D1W3_9STRA (PlsC domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D1W3_9STRA)

HSP 1 Score: 119 bits (297), Expect = 1.820e-24
Identity = 74/212 (34.91%), Postives = 122/212 (57.55%), Query Frame = 3 
Query:  459 SALIKRLNARWLLLLMGVTVRAEGLEEPRRLLSRPAMLLFAHVSTLDAMIILGTFPRAMCAVVKEELFALPFIGWVMASHGGIPINRSDRASAVQALAKAAARARELKLFVAMAPEGTRSKTGQLGPFKKGALHMQEQLQWPVIPVTIHGAYELFPLKTYFNECGRVVVRFHSPIEAADI-----KSREGLKQRLRQEMLDAVEVETPQAGS 1079
            +AL ++   R  L L GV    EG  + +     P ++LF H S LD  + L +FP+   ++ K++++ +P++GW+      +PI+R  R  A++ L +A  RA      VA++PEGTRSKTGQL  FKKG  ++Q + +  + PV I G +EL+P K +F   G+V + +  PI+   +     K++E L + +R++M DA+E  T +A S
Sbjct:  190 NALFQKAVGRGFLYLAGVFYTEEG--KAKGGYRTPLVVLFQHGSNLDGFLFLDSFPQFFKSIGKDDIYLMPYVGWLAYVIATLPIDRRHRNEAIKQLGRAT-RACASGTAVALSPEGTRSKTGQLMRFKKGPFYVQAESRASIAPVVIQGTFELWPPKYFFTCPGQVCMNYLPPIDPDSLPAKVGKNKEELSRFVRRQMFDAIEDLTAEASS 398
[Close]
BLAST of mRNA_H-elongata_contig17923.4747.1 vs. uniprot
Match: A0A660XXP4_9BACT (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A660XXP4_9BACT)

HSP 1 Score: 112 bits (279), Expect = 6.100e-24
Identity = 65/184 (35.33%), Postives = 106/184 (57.61%), Query Frame = 3 
Query:  492 LLLLMGVTVRAEGLEEPRRLLSRPAMLLFAHVSTLDAMIILGTFPRAMCAVVKEELFALPFIGWVMASHGGIPINRSDRASAVQALAKAAARARELKLFVAMAPEGTRSKTGQLGPFKKGALHMQEQLQWPVIPVTIHGAYELFPLKTYFNECGRVVVRFHSPIEAADIKSREGLKQRLRQEML 1043
            +L LMGV ++  G E+ +++    A++L  H S LD  I +    +    + K+ELF +PF GW++   G IPI+R +R  A+ ++ K + +     + + ++PEGTRSK G++GPFKKGA H+  +   P+IPVT+ GA    P K++    G V V   +P+   D +      Q++RQEM+
Sbjct:   40 ILFLMGVRLKVYGREKLKKV--DTAIILINHESALDIPIAVAATEKYARFMAKKELFRIPFFGWLLKLTGHIPIDRENRNKALNSIEKVSKKLIGKNISIIVSPEGTRSKDGRIGPFKKGAFHLAAKHDLPLIPVTLMGARYCVPNKSFRIIPGEVKVTIGNPVYVKDFQGIGECIQKVRQEMV 221
[Close]
BLAST of mRNA_H-elongata_contig17923.4747.1 vs. uniprot
Match: A0A7C2SD30_9DELT (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7C2SD30_9DELT)

HSP 1 Score: 111 bits (277), Expect = 1.850e-23
Identity = 69/184 (37.50%), Postives = 100/184 (54.35%), Query Frame = 3 
Query:  486 RWLLLLMGVTVRAEGLEEPRRLLSRPAMLLFAHVSTLDAMIILGTFPRAMCAVVKEELFALPFIGWVMASHGGIPINRSDRASAVQALAKAAARARELKLFVAMAPEGTRSKTGQLGPFKKGALHMQEQLQWPVIPVTIHGAYELFPLKTYFNECGRVVVRFHSPIEAADI--KSREGLKQRLR 1031
            RW+    G+TV AEGLE       R  + +  H S LD   I+ T P +   V K EL  +P  GW +   G + I+R  R  AV +L +AA R R     V + PEGTRS+TG + PFK G  H+  + Q P++P+T+ G++ L P ++   E G + V +  PIE   +  + RE LK+R+R
Sbjct:   67 RWIFATCGITVEAEGLENVDA--RRAHVFMSNHQSVLDIGAIVATLPVSWRFVAKRELTWIPLFGWALRLGGHVIIDRGRRERAVASLQRAARRIRA-GTSVIIFPEGTRSETGVMRPFKSGGFHLAIEAQAPILPITVSGSHRLTPKRSLRVESGHMKVVYGKPIETRGLPLEEREALKERVR 247
[Close]
BLAST of mRNA_H-elongata_contig17923.4747.1 vs. uniprot
Match: A0A2A4Z296_9FLAO (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A2A4Z296_9FLAO)

HSP 1 Score: 107 bits (267), Expect = 2.030e-22
Identity = 62/164 (37.80%), Postives = 96/164 (58.54%), Query Frame = 3 
Query:  501 LMGVTVRAEGLEEPRRLLSRPAMLLFAHVSTLDAMIILGTFPRAMCAVVKEELFALPFIGWVMASHGGIPINRSDRASAVQALAKAAARARELKLFVAMAPEGTRSKTGQLGPFKKGALHMQEQLQWPVIPVTIHGAYELFPLKTYFNECGRVVVRFHSPIEAA 992
            ++G+ ++  G+E       +P + +  H S LD +++  + P  +  + K+EL  +P +GW M   G I I+RS++  AV++L KAA + +  K  V M PEGTR+KTG LGPFKKGA H+       ++P+ I G Y ++P K+     G VVVR   PIEA+
Sbjct:   49 IVGIKLKVHGVENVPT--DKPVIFVANHCSHLDIIVLCRSLPVNLHFIGKKELAWVPIVGWYMFIAGHIFIDRSNKRKAVESLKKAAVKIKNGKRVV-MYPEGTRTKTGALGPFKKGAFHLALDAGVSIVPIHIDGTYNVWPAKSRTITPGDVVVRIGKPIEAS 209
[Close]
BLAST of mRNA_H-elongata_contig17923.4747.1 vs. uniprot
Match: A0A1E3PAS8_WICAA (1-acyl-sn-glycerol-3-phosphate acyltransferase n=1 Tax=Wickerhamomyces anomalus (strain ATCC 58044 / CBS 1984 / NCYC 433 / NRRL Y-366-8) TaxID=683960 RepID=A0A1E3PAS8_WICAA)

HSP 1 Score: 108 bits (269), Expect = 4.230e-22
Identity = 75/222 (33.78%), Postives = 114/222 (51.35%), Query Frame = 3 
Query:  438 GCSYVGLSALI------KRLNARWLLL---------LMGVTVRAEGLEEPRRLLSRPAMLLFAHVSTLDAMIILGTFPRAMCAVVKEELFALPFIGWVMASHGGIPINRSDRASAVQALAKAAARARELKLFVAMAPEGTRS--KTGQLGPFKKGALHMQEQLQWPVIPVTIHGAYELFPLKTYFNECGRVVVRFHSPIEAADIKSRE--GLKQRLRQEMLD 1046
            GC+  G+ A I      KR  A+W            L+G+ ++   L    RL   PA+L+  H S LD +I+   FP+      K+ L  +PF+GW MA  G   ++RS+R  +V+ L KA A  +E K  + + PEGTRS  KT ++ PFKKGA H+ +Q + PVIP+ +     L    T   ECG + ++   PI   D+K  +      ++R+ ML+
Sbjct:   22 GCALYGVLASIALTLVGKRHLAQWTTARVFYYTFSSLLGIRIK---LINGERLDKLPAILISNHQSALDILILGRIFPKGCVVTSKKSLKYVPFLGWFMALSGTFFLDRSNREKSVKTLNKALANLKEKKRGLFIFPEGTRSYCKTPEMLPFKKGAFHLAQQAEIPVIPLIVSVTSPLLDASTKSFECGEITIKVLEPISTKDLKKEDVGAFSAKIRETMLE 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17923.4747.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSD1_ECTSI7.630e-12068.521-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A6H5L1M9_9PHAE3.780e-8844.57PlsC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YU14_9STRA9.380e-3741.24PlsC domain-containing protein n=2 Tax=Tribonema m... [more]
A0A2W0A808_9BACT1.200e-2641.141-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A6N8ZET9_9GAMM1.300e-2537.391-acyl-sn-glycerol-3-phosphate acyltransferase n=3... [more]
A0A4D9D1W3_9STRA1.820e-2434.91PlsC domain-containing protein n=2 Tax=Monodopsida... [more]
A0A660XXP4_9BACT6.100e-2435.331-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A7C2SD30_9DELT1.850e-2337.501-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A2A4Z296_9FLAO2.030e-2237.801-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]
A0A1E3PAS8_WICAA4.230e-2233.781-acyl-sn-glycerol-3-phosphate acyltransferase n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17923contigH-elongata_contig17923:71..5766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score385.6
Seed ortholog evalue3.1e-104
Seed eggNOG ortholog2880.D8LSD1
KEGG rclassRC00004,RC00037,RC00039
KEGG koko:K00655,ko:K13509
KEGG ReactionR02241,R09381
KEGG Pathwayko00561,ko00564,ko01100,ko01110,ko04072,ko04975,map00561,map00564,map01100,map01110,map04072,map04975
KEGG ModuleM00089
EggNOG free text desc.1-acylglycerol-3-phosphate O-acyltransferase activity
EggNOG OGsCOG0204@1,KOG2848@2759
EC2.3.1.51
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004
Hectar predicted targeting categoryother localisation
Ec32 ortholog description1-acyl-sn-glycerol-3-phosphate acyltransferase
Ec32 orthologEc-21_003240.1
Exons6
Model size2850
Cds size1278
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17923.4747.1prot_H-elongata_contig17923.4747.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17923 1470..4766 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930034.8558886-UTR-H-elongata_contig17923:70..14691622930034.8558886-UTR-H-elongata_contig17923:70..1469Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17923 71..1469 -
1691679255.527761-UTR-H-elongata_contig17923:70..14691691679255.527761-UTR-H-elongata_contig17923:70..1469Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17923 71..1469 -
1622930034.9440584-UTR-H-elongata_contig17923:4766..48011622930034.9440584-UTR-H-elongata_contig17923:4766..4801Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17923 4767..4801 -
1691679255.5883887-UTR-H-elongata_contig17923:4766..48011691679255.5883887-UTR-H-elongata_contig17923:4766..4801Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17923 4767..4801 -
1622930034.9591823-UTR-H-elongata_contig17923:5628..57661622930034.9591823-UTR-H-elongata_contig17923:5628..5766Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17923 5629..5766 -
1691679255.6006725-UTR-H-elongata_contig17923:5628..57661691679255.6006725-UTR-H-elongata_contig17923:5628..5766Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17923 5629..5766 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930034.8716414-CDS-H-elongata_contig17923:1469..18861622930034.8716414-CDS-H-elongata_contig17923:1469..1886Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17923 1470..1886 -
1691679255.540658-CDS-H-elongata_contig17923:1469..18861691679255.540658-CDS-H-elongata_contig17923:1469..1886Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17923 1470..1886 -
1622930034.884465-CDS-H-elongata_contig17923:2441..26271622930034.884465-CDS-H-elongata_contig17923:2441..2627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17923 2442..2627 -
1691679255.5501206-CDS-H-elongata_contig17923:2441..26271691679255.5501206-CDS-H-elongata_contig17923:2441..2627Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17923 2442..2627 -
1622930034.8960621-CDS-H-elongata_contig17923:3022..31271622930034.8960621-CDS-H-elongata_contig17923:3022..3127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17923 3023..3127 -
1691679255.5597339-CDS-H-elongata_contig17923:3022..31271691679255.5597339-CDS-H-elongata_contig17923:3022..3127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17923 3023..3127 -
1622930034.9114532-CDS-H-elongata_contig17923:3746..38391622930034.9114532-CDS-H-elongata_contig17923:3746..3839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17923 3747..3839 -
1691679255.5691166-CDS-H-elongata_contig17923:3746..38391691679255.5691166-CDS-H-elongata_contig17923:3746..3839Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17923 3747..3839 -
1622930034.923683-CDS-H-elongata_contig17923:4289..47661622930034.923683-CDS-H-elongata_contig17923:4289..4766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17923 4290..4766 -
1691679255.579022-CDS-H-elongata_contig17923:4289..47661691679255.579022-CDS-H-elongata_contig17923:4289..4766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17923 4290..4766 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17923.4747.1

>prot_H-elongata_contig17923.4747.1 ID=prot_H-elongata_contig17923.4747.1|Name=mRNA_H-elongata_contig17923.4747.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=426bp
MAERQIFSLFQRRRKKRLRLKARPDGGDSCHGNGTVTPEPSHINPILSTP
KPKAEEDVAAAIGRDINGGSGAVSDDADASSSESNDGCGCSYVGLSALIK
RLNARWLLLLMGVTVRAEGLEEPRRLLSRPAMLLFAHVSTLDAMIILGTF
PRAMCAVVKEELFALPFIGWVMASHGGIPINRSDRASAVQALAKAAARAR
ELKLFVAMAPEGTRSKTGQLGPFKKGALHMQEQLQWPVIPVTIHGAYELF
PLKTYFNECGRVVVRFHSPIEAADIKSREGLKQRLRQEMLDAVEVETPQA
GSALGPSRRAASTAATALTYFLTAHAAKSLTILCRREGLAVWTLIAGTCA
YIAVSTLFVYFVYARKCFSSTGSRRKASTIKGVRDGGSEREKRKGVAKGT
SEVAPLLGGDKGKDKKSPADQRGDK*
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mRNA from alignment at H-elongata_contig17923:71..5766-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17923.4747.1 ID=mRNA_H-elongata_contig17923.4747.1|Name=mRNA_H-elongata_contig17923.4747.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5696bp|location=Sequence derived from alignment at H-elongata_contig17923:71..5766- (Himanthalia elongata Himel1 dioecious)
AGGGACTACGAAGAGAAGTGGAAGCTCTGGCGGGGACCTTGGTGCTGAGG
CCCGTCCAGCGCAAGCCGTGGCCTCTGTTCAAGGCGGTAGACTTCCTGTG
GCGCGCGCCGGCTACGTTTTGTTTTGTTGTTTTCCTTGGTGAGCCGCACT
TTTTCCCTCTCTCCTTCTTTGATCGCGCAGCTTGTCGCTTTATTTTTGTG
TGTTGTGTGTGTAGTGTGTAGATTGTCGTCGATGTCGGTATCGGTATCGG
TCATTCCATTATATTATATATATCATAGAAATAAAACGCTATTATAGTCA
TTATTTCGCTATTATAGTCATGATTTCGATATTATTGTCATGATCTCGAT
ATTATAGTCATGATTTCGATATTATCGTCATAATTTCGATATTATAGTCA
TGATTTCGATATTATCGTCATGATCTCGATATTATAGTCATGGTTTCGAT
ATTATTGACATGATTTCGATATTATAGTCATGATTACGCTATTATAGCCA
TGATTTTTCTATTATAGCCATGATTTTGCTATTATAGTCATGATTACCCT
ATTATCGTCATGATTTTGCTATTATAGTCATGATTATCCTATTATCGTCA
TGAGTTTGCTATTATAGCCATGATTTCGATGCGCAACTTCTTCTTGATTC
ACGGCCGACAAACTGATATGATTCAAGCTGGTGGTAGTCGGGTATGATTT
TATGATTTTCCAAGCGTCAAGACTATCTCGAAGCAAAAGGGCCACTCAAT
GCGTCCTAGGGCAGTGATCGACTAAAACGGTAGACAGCTTGGTATAACCT
ACCTGCAAGCCCTATCACATGCGCCGCACGACTTTGACCACTGGGGCTCT
TATTTTCCTCTTCACCTCGCATGTTACCGTGTTTGCCCCCCGTCCCCTCC
CGCCTTCCGTGTATGTTATGTTGTTTTCCGTACCGTTTTTCTCCCCACCC
CATCATCTGTACAAGCCTTCGTCGTGTCTATACCACTGATCCTCCTCAAC
ATGGCGGAGCGGCAAATCTTCTCCTTGTTTCAAAGACGTCGAAAAAAACG
CCTCCGTCTCAAGGCTCGACCCGACGGTGGCGACAGCTGTCACGGCAACG
GCACCGTGACCCCGGAACCCTCTCACATCAACCCTATCTTGTCGACCCCG
AAGCCGAAAGCAGAGGAGGATGTAGCCGCCGCGATCGGCCGAGATATTAA
CGGGGGATCAGGGGCAGTAAGCGACGATGCCGATGCTTCGAGTTCCGAGA
GTAACGATGGTTGCGGTTGCAGCTACGTCGGGCTTTCGGCGCTCATCAAG
CGCCTGAACGCCCGATGGTTGCTGCTGCTGATGGGGGTTACCGTGCGCGC
GGAGGGGCTGGAGGAACCACGCCGACTCTTGTCGCGCCCGGCGATGCTCC
TGTTTGCCCACGTCAGCACGCTCGACGCCATGATCATCCTGGGGACGTTC
CCCCGGGCGATGTGCGCCGTCGTGAAGGTAGAAAAGGGAATACAAAATGA
GATGAGGGGGTCGAGGAAGCGGGAAAATAATTTAGTTGAGATGAGGGGGG
ATGAGGGAGAGAGGTAAGAACCAAAGTTTTGCCACGTTTGTGTTTGGCGT
GATATCATAACGAGCACAACTGTAGTACATGGCCTAGCGACACAGAAACA
CACATAAAGCCAGTAGCGACCGGTAAAACTATTTGTTTTTAATTCGGGTT
AAGCTTGAGCTACGCGCGCGTGGCTTCGTCGATCGTCTCTTACACGTCTG
ATGATGTTTTATGTTGCTGCCCCTCCCCTGTGATTCATCAAGAATGAAGC
GTGCATACATATATATAAACCCGTCGATATCTTCCGGATGGCGTCATCGC
CGGAAGGATCTTAAAAAATACCTCCGTACACCTTCTCGGATGTTTTTGTC
GTGCGGGTGATTTGCTGATTTTTTCAGGAAGAACTGTTTGCGCTCCCCTT
CATCGGCTGGGTCATGGCTTCACACGGCGGCATACCGATCAATCGCAGCG
ATCGAGCATCTGCCGTCCAGGTGGGCACAGTAACAGTGACGGTGTGCGAG
CAGGAGAGTGATTTAATTCCAAGTGCACGCTAGTAATAGTATCACCACAA
AAGGGAAAAAGTGAATTGATAGCTCAGAAGCCTTGATTTTTAGATGTTTA
TTGTCGACGGCAGAAGGCAAAAATAAAAAAGCCGGACGAAATACGATGCT
CCAACTATCAAGTGTACCTGGTATGGTATATAATTCCTCTTGAGATTCGA
CGATTTTTTTTACAGATAATAAATAAAATAAATGCGCGATTTCGGCGATT
TCGCAGGCCAGAAACATATATACGATTTTACATTGAGCTTGGTGCAACTC
TGTCTGCATGTATAACTGTCTGGTAACTTGTATGTTAACTGTCTGGTAAT
TGTCTGGTAATTTGTTAGAATAAGTATTAGATATGCATGTATCCTCTGTG
AAGGATTTCGCGCTCGACCCGCTTGCACCCGCGCATACCGCACATTTTTT
TATCTCCTTACGTCTCGCCTCCTTCGTCGCGGTGGACAAAAACGTCTCCC
CGACTTTGCCACGCCAACTCCATGCCCCTACCGAATGGCGCTCTCTCTTT
CTTATCCAACGAAAACCCACGATCACTACGCCCGGTCAGGCCCTGGCGAA
AGCAGCTGCTCGCGCGAGAGAGCTGAAGCTGTTCGTGGCGATGGCGCCCG
AGGGTACGAGATCGAAGACGGGTCAACTCGGACCCTTCAAGAAAGTAAGA
GCTAGCTGTCCTTGCTGTCCTTCCTCGATGAGAGGGAAAGGGTCGGAAGC
AGACAGGGACGGGGAAATAGCTAGACAAGGAACGTTAGGTTAGCGGGAGC
GCAAATCTCCATCCGCTCGCCCCTAGCATGTTGGTGATTGTCGCTTATAC
GATCATGAGGACGATTTTGCAATTATGAGGATGGTGAAAAAGTACTGAAG
CCCCAAAAGCGTTCCACCGAAAGCATCTGTTGTGAAACGTGCCCACTCAT
CTTGGACAGTGCACCGTACCATTTTTCGGTTTGTTTGACCTATTTATGGT
TAGGGTGCGGGTGCGTGTCAAACCATAAAGGCGTTCGTGCTGCGTGTGTC
ATGTACAGCGCTCCTCCATCCCTCGCATCTTCTTCACAGGGAGCTCTTCA
CATGCAGGAGCAGCTGCAGTGGCCCGTGATTCCGGTGACTATTCATGGCG
CCTACGAACTCTTCCCGCTGAAGACGTACTTCAACGAGTGCGGTAGAGTA
GTGGTTCGGTTCCACAGCCCCATCGAGGCGGCAGACATCAAATCTCGGGA
AGGGCTGAAGCAGAGGCTCCGACAGGTAAGCGGAAGGGAGAGAGGAAGAA
AATATTTTGACTCGGGAACACGAACACAGGCACGGGCTCCTCTCGAGCGC
GTTTGGAGGATGATGAGTTCTACGATCGATCGGCTTCGCCCCAGCTCTTG
GATCATTTTGTGTTGTTTGTGCGGGGTACGGATACGGATACGGGAATCAC
TATTACTAGTATAGGGAGGTAAGGGAGGGAATCACTGTTGTAGCAGAGGG
AGAGAGCGAGACGCGCGGTCTTAGATCGTATCACCGCGTTTTATGGGTTT
TGAGGGGTATTGTTGTATTCGGCAGGGGAGGGTAAAAGAGGGGTGCATTT
TAAGCTCTTCAGGAGACCGGGATATAACACGTTATGGCCATATTTACGTC
CAAGGCTTCTCCGACTTTTGCATCACCGTGACGTCGAGGGCCACCGCACC
GCACCGACTACAAACAATTAACTATTAATTATAACGACTAACGTTGCAGT
ACTTTACAAAAATTGTGATCTCCTGTGTTCGGCATCGCGCCATCCCATGT
GTGCGTGCTTACATGTGCGGGGGGGGGTAGGAAATGCTCGACGCCGTGGA
AGTGGAAACGCCACAGGCGGGTAGCGCGCTAGGCCCCTCCCGACGCGCTG
CCAGCACCGCCGCGACGGCGCTCACGTACTTCTTGACCGCTCACGCAGCG
AAGAGTCTGACAATCCTCTGTCGCAGAGAAGGTTTGGCGGTCTGGACGCT
GATAGCCGGTACCTGTGCCTACATCGCCGTGTCGACGCTGTTCGTCTACT
TCGTATACGCTCGGAAATGCTTTAGCAGCACTGGTAGTAGGCGCAAGGCT
TCTACAATCAAAGGAGTTCGTGATGGCGGCAGCGAGAGAGAAAAGAGAAA
AGGAGTGGCCAAAGGGACTTCTGAGGTGGCGCCCCTGCTAGGGGGCGATA
AAGGCAAAGACAAGAAGTCGCCCGCGGATCAAAGGGGCGACAAATAGAAG
GCATGACTCCCCGCTGCCCTGGGTACATAGCACGAGGCGCGTAGATTTAG
TGTGGGATCGCACAATTCGGCGAGGTTGAAAAGCTACGGTGAAGAGGAGC
TTTCAGTGTGGGTGGGAGGCGCCTTTCGCGCGCGTGTCGTAATGTCGGAT
TATGCATGTCCGCGTTCTATATTAATAACCAAAAATGACGAAAACACGAG
TCAGTCGGTTTCGCTATCCCAACGACACATTTCGTGGATAGAGGCACACG
TCTCTTTCCTCGACCCTCGTCCGGGAAAAGACTATGATCGAGGTCGCACT
GTTGTCGTTCAATCTTGATGTGATCTGGATGATAATCTAGGAAAGGAAGA
AAGAGGTAGAGAGAGGGAGGTATGCGACCCTTTTGGTCGCCCATTAACGA
AGTACCCCGTCGACAAGAAAAAAATGCTCGGGAAACCCTAGCAAACACAT
ACAACATTTTTCGTGCGTCCAACCGACAGACCGACTCATCGGAGGATCTT
ATTCCTTCTGAGTGGGTGCGGTGAGTTTACAGACAGGCAGGTGTTGCGAC
TCGGGGAAGGCGGCGCGAGAAAGGGTCGTGGCCTATTTTTGCTCGCTATA
ATAGCTTGATGATGGGAAGTGAGAGGGCCGCCACGCCGGCCGGCTTGCGT
AAGAAGTTAAGTTTGGAGGTTTGTTGATTTGGCCGCGCGGGCATTTTTTT
TCGTTTTGTGTGCTGGATGATCGTAACTGTTAACTGTAGCAGTATTAATA
GTAGCCTGTGGCCATGTCCTTGGTTCGTCAGTCGCGTTTTTCTGAAGCTG
TATGTAGCTTAAGTGTGTTGGTGAAGGTCTAGTGTGTCGGCGGCCGCAGC
ATGATACCGTCGATACGATACTGCGGGCCTTTAACTGATGAGGGTTGGGG
GGTTATTCTCAAAAATATAATTCAGAGAAGTCGCGTGGCGTTTTTTCTTC
CACCGCGGTGTTGAAACGCTAACTCTAGCCCCTGAGGTAGCCCTTTCAGA
CGGGGGGGTTGTGAAGGGGCAAACGACATATGTGTTTTTTTCGTGCACCG
CCACCGGCATTTCATTCATATACCAATATATATATATATATATATGTAGT
TCGCGGCGAAGGCGGCGACGGAGTTTTCTTTTCTTGTAGTGCAGTGACGC
AAAGATAACTGTCAGGAGTGGCGGGACTGTCATAGACCACCAACAACAGC
TAAATATCTCTCGGCATTCGCGCTTCGCTGCGGTTGTCGTGGCAACCTTT
TTAATGGGGTTACCGTCTTGAGGGGCGCGGCGGGCACGTAGTCTGCTTGT
CCCTGTCGCCCTGGGAGGCCTGCTTCCAGCTTGCGTATGCGCACACAAAT
GCAGAAAAAAAAAAGAAAAAAAGCACGAGACAACCCATGCAATCCC
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Coding sequence (CDS) from alignment at H-elongata_contig17923:71..5766-

>mRNA_H-elongata_contig17923.4747.1 ID=mRNA_H-elongata_contig17923.4747.1|Name=mRNA_H-elongata_contig17923.4747.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2556bp|location=Sequence derived from alignment at H-elongata_contig17923:71..5766- (Himanthalia elongata Himel1 dioecious)
ATGGCGGAGCGGCAAATCTTCTCCTTGTTTCAAAGACGTCGAAAAAAACG
CCTCCGTCTCAAGGCTCGACCCGACGGTGGCGACAGCTGTCACGGCAACG
GCACCGTGACCCCGGAACCCTCTCACATCAACCCTATCTTGTCGACCCCG
AAGCCGAAAGCAGAGGAGGATGTAGCCGCCGCGATCGGCCGAGATATTAA
CGGGGGATCAGGGGCAGTAAGCGACGATGCCGATGCTTCGAGTTCCGAGA
GTAACGATGGTTGCGGTTGCAGCTACGTCGGGCTTTCGGCGCTCATCAAG
CGCCTGAACGCCCGATGGTTGCTGCTGCTGATGGGGGTTACCGTGCGCGC
GGAGGGGCTGGAGGAACCACGCCGACTCTTGTCGCGCCCGGCGATGCTCC
TGTTTGCCCACGTCAGCACGCTCGACGCCATGATCATCCTGGGGACGTTC
CCCCGGGCGATGTGCGCCGTCGTGAAGATGGCGGAGCGGCAAATCTTCTC
CTTGTTTCAAAGACGTCGAAAAAAACGCCTCCGTCTCAAGGCTCGACCCG
ACGGTGGCGACAGCTGTCACGGCAACGGCACCGTGACCCCGGAACCCTCT
CACATCAACCCTATCTTGTCGACCCCGAAGCCGAAAGCAGAGGAGGATGT
AGCCGCCGCGATCGGCCGAGATATTAACGGGGGATCAGGGGCAGTAAGCG
ACGATGCCGATGCTTCGAGTTCCGAGAGTAACGATGGTTGCGGTTGCAGC
TACGTCGGGCTTTCGGCGCTCATCAAGCGCCTGAACGCCCGATGGTTGCT
GCTGCTGATGGGGGTTACCGTGCGCGCGGAGGGGCTGGAGGAACCACGCC
GACTCTTGTCGCGCCCGGCGATGCTCCTGTTTGCCCACGTCAGCACGCTC
GACGCCATGATCATCCTGGGGACGTTCCCCCGGGCGATGTGCGCCGTCGT
GAAGGAAGAACTGTTTGCGCTCCCCTTCATCGGCTGGGTCATGGCTTCAC
ACGGCGGCATACCGATCAATCGCAGCGATCGAGCATCTGCCGTCCAGGAA
GAACTGTTTGCGCTCCCCTTCATCGGCTGGGTCATGGCTTCACACGGCGG
CATACCGATCAATCGCAGCGATCGAGCATCTGCCGTCCAGGCCCTGGCGA
AAGCAGCTGCTCGCGCGAGAGAGCTGAAGCTGTTCGTGGCGATGGCGCCC
GAGGGTACGAGATCGAAGACGGGTCAACTCGGACCCTTCAAGAAAGCCCT
GGCGAAAGCAGCTGCTCGCGCGAGAGAGCTGAAGCTGTTCGTGGCGATGG
CGCCCGAGGGTACGAGATCGAAGACGGGTCAACTCGGACCCTTCAAGAAA
GGAGCTCTTCACATGCAGGAGCAGCTGCAGTGGCCCGTGATTCCGGTGAC
TATTCATGGCGCCTACGAACTCTTCCCGCTGAAGACGTACTTCAACGAGT
GCGGTAGAGTAGTGGTTCGGTTCCACAGCCCCATCGAGGCGGCAGACATC
AAATCTCGGGAAGGGCTGAAGCAGAGGCTCCGACAGGGAGCTCTTCACAT
GCAGGAGCAGCTGCAGTGGCCCGTGATTCCGGTGACTATTCATGGCGCCT
ACGAACTCTTCCCGCTGAAGACGTACTTCAACGAGTGCGGTAGAGTAGTG
GTTCGGTTCCACAGCCCCATCGAGGCGGCAGACATCAAATCTCGGGAAGG
GCTGAAGCAGAGGCTCCGACAGGAAATGCTCGACGCCGTGGAAGTGGAAA
CGCCACAGGCGGGTAGCGCGCTAGGCCCCTCCCGACGCGCTGCCAGCACC
GCCGCGACGGCGCTCACGTACTTCTTGACCGCTCACGCAGCGAAGAGTCT
GACAATCCTCTGTCGCAGAGAAGGTTTGGCGGTCTGGACGCTGATAGCCG
GTACCTGTGCCTACATCGCCGTGTCGACGCTGTTCGTCTACTTCGTATAC
GCTCGGAAATGCTTTAGCAGCACTGGTAGTAGGCGCAAGGCTTCTACAAT
CAAAGGAGTTCGTGATGGCGGCAGCGAGAGAGAAAAGAGAAAAGGAGTGG
CCAAAGGGACTTCTGAGGTGGCGCCCCTGCTAGGGGGCGATAAAGGCAAA
GACAAGAAGTCGCCCGCGGATCAAAGGGGCGACAAATAGGAAATGCTCGA
CGCCGTGGAAGTGGAAACGCCACAGGCGGGTAGCGCGCTAGGCCCCTCCC
GACGCGCTGCCAGCACCGCCGCGACGGCGCTCACGTACTTCTTGACCGCT
CACGCAGCGAAGAGTCTGACAATCCTCTGTCGCAGAGAAGGTTTGGCGGT
CTGGACGCTGATAGCCGGTACCTGTGCCTACATCGCCGTGTCGACGCTGT
TCGTCTACTTCGTATACGCTCGGAAATGCTTTAGCAGCACTGGTAGTAGG
CGCAAGGCTTCTACAATCAAAGGAGTTCGTGATGGCGGCAGCGAGAGAGA
AAAGAGAAAAGGAGTGGCCAAAGGGACTTCTGAGGTGGCGCCCCTGCTAG
GGGGCGATAAAGGCAAAGACAAGAAGTCGCCCGCGGATCAAAGGGGCGAC
AAATAG
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