mRNA_H-elongata_contig17910.4741.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17910.4741.1
Unique NamemRNA_H-elongata_contig17910.4741.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17910.4741.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17910contigH-elongata_contig17910:811..1485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.3
Seed ortholog evalue2.6e-08
Seed eggNOG ortholog2880.D8LLY0
Preferred nameNWD1
KEGG koko:K04508,ko:K10594,ko:K11127
KEGG Pathwayko04013,ko04120,ko04310,map04013,map04120,map04310
EggNOG free text desc.ribosomal large subunit assembly
EggNOG OGsCOG2319@1,KOG0271@1,KOG0271@2759,KOG0273@2759,KOG0613@1,KOG0613@2759
EC2.3.2.26
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size675
Cds size213
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17910.4741.1prot_H-elongata_contig17910.4741.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17910 847..1059 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930034.1811595-UTR-H-elongata_contig17910:810..8461622930034.1811595-UTR-H-elongata_contig17910:810..846Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17910 811..846 +
1691679255.1568408-UTR-H-elongata_contig17910:810..8461691679255.1568408-UTR-H-elongata_contig17910:810..846Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17910 811..846 +
1622930034.2119565-UTR-H-elongata_contig17910:1059..14851622930034.2119565-UTR-H-elongata_contig17910:1059..1485Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17910 1060..1485 +
1691679255.1924756-UTR-H-elongata_contig17910:1059..14851691679255.1924756-UTR-H-elongata_contig17910:1059..1485Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17910 1060..1485 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930034.1969278-CDS-H-elongata_contig17910:846..10591622930034.1969278-CDS-H-elongata_contig17910:846..1059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17910 847..1059 +
1691679255.1773894-CDS-H-elongata_contig17910:846..10591691679255.1773894-CDS-H-elongata_contig17910:846..1059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17910 847..1059 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17910.4741.1

>prot_H-elongata_contig17910.4741.1 ID=prot_H-elongata_contig17910.4741.1|Name=mRNA_H-elongata_contig17910.4741.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
MAKHGREFLVEREVIESLMRSVPPCPRHLVIRSLERGGEYAFRVAGTNAA
GKGELSLWSEVIQIVNCASG*
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mRNA from alignment at H-elongata_contig17910:811..1485+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17910.4741.1 ID=mRNA_H-elongata_contig17910.4741.1|Name=mRNA_H-elongata_contig17910.4741.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=675bp|location=Sequence derived from alignment at H-elongata_contig17910:811..1485+ (Himanthalia elongata Himel1 dioecious)
GTCGCCAAGGCGGCTCGAAGATCCGTGGTTGTCGTCATGGCAAAGCACGG
GCGTGAATTTCTCGTAGAGCGCGAGGTTATTGAGAGCCTAATGCGTTCGG
TGCCGCCTTGCCCGAGACACCTCGTCATAAGAAGTTTGGAGAGAGGCGGC
GAGTACGCGTTCCGGGTCGCGGGGACCAACGCCGCGGGGAAAGGAGAATT
GTCTCTGTGGTCGGAGGTCATACAGATTGTGAATTGCGCCAGCGGCTAAA
GAAGCAATAAGCGTTTTCTCTCTCCCTCGCTCACGTCGACGATGACGTCG
ATTATGACTGATTTGTGCATGGCTCGAAGTCGCGATCTCTTACTTGAACC
TAACCAACCGTACTACGATGTGCAAAGTTCGAACACAAGCGTGCCGTGGT
AATCTCAACGGGCAACTTTCGCCCTAAAGAAAAACGTAGACGCGCCACGG
GTGAACTTACAGCACTAGGCGACATGCTTACGCATCTGGCATGAAATACA
TACTATCCATAATACCGCATATCTACCCTCCAGAATACCACATACCGACG
AATCGACACCGCTCTCATGTCGGCGAGTCTGCCCACTGACAGACCTCGTT
GCGCACGTACTTGAGCGCAAGGCAGCGACATGCCAACTCTTGTCGTTTCC
CAAATGTTTATACTAACTGTACCCC
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Coding sequence (CDS) from alignment at H-elongata_contig17910:811..1485+

>mRNA_H-elongata_contig17910.4741.1 ID=mRNA_H-elongata_contig17910.4741.1|Name=mRNA_H-elongata_contig17910.4741.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig17910:811..1485+ (Himanthalia elongata Himel1 dioecious)
ATGGCAAAGCACGGGCGTGAATTTCTCGTAGAGCGCGAGGTTATTGAGAG
CCTAATGCGTTCGGTGCCGCCTTGCCCGAGACACCTCGTCATAAGAAGTT
TGGAGAGAGGCGGCGAGTACGCGTTCCGGGTCGCGGGGACCAACGCCGCG
GGGAAAGGAGAATTGTCTCTGTGGTCGGAGGTCATACAGATTGTGAATTG
CGCCAGCGGCTAAATGGCAAAGCACGGGCGTGAATTTCTCGTAGAGCGCG
AGGTTATTGAGAGCCTAATGCGTTCGGTGCCGCCTTGCCCGAGACACCTC
GTCATAAGAAGTTTGGAGAGAGGCGGCGAGTACGCGTTCCGGGTCGCGGG
GACCAACGCCGCGGGGAAAGGAGAATTGTCTCTGTGGTCGGAGGTCATAC
AGATTGTGAATTGCGCCAGCGGCTAA
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