mRNA_H-elongata_contig17905.4736.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17905.4736.1
Unique NamemRNA_H-elongata_contig17905.4736.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17905.4736.1 vs. uniprot
Match: D7FIQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIQ0_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 1.230e-100
Identity = 162/216 (75.00%), Postives = 189/216 (87.50%), Query Frame = 1 
Query:    1 QNGLAFLFSSAAVATSTASPALSDDETD-LDDDSKQKIVQALKEALQGIGELGVDTAGEDERSSTPKDVLNASSDVLPNRTPFEMQYELFKRGMELEDDDNFVGAEKQWTEIIENFNSPNFRATSPGNKFLLARAYSNRGNTRLSLQKTREAILDYSESIDLMPEKGEFWMARGVAYEDMADRKIMAQ-DRNMAMARTFYESALADYDHAVVLDPQ 642
            +NGLA L  S AVA+  ASPA+++ ++D LD+++KQKI QAL EAL+G+  + +   G     +  KDVL ASSDVLPNR+PFEMQYELFKRGMELEDDD+FVGAE+QWTEIIENFNSPNFRAT+PGNK LLARAYSNRGNTRLSLQKTREAILDYSESIDL+PEKGEFW+ARGVA+EDMADRK++A+ DRN+ +ARTFYESALADYDHAVVLDPQ
Sbjct:   72 KNGLALLVGSVAVAS--ASPAVAETDSDELDEETKQKITQALMEALEGMEGMELTPGG----GAQSKDVLKASSDVLPNRSPFEMQYELFKRGMELEDDDDFVGAERQWTEIIENFNSPNFRATNPGNKVLLARAYSNRGNTRLSLQKTREAILDYSESIDLVPEKGEFWLARGVAFEDMADRKVLARADRNVEVARTFYESALADYDHAVVLDPQ 281
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BLAST of mRNA_H-elongata_contig17905.4736.1 vs. uniprot
Match: A0A6H5JBX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBX7_9PHAE)

HSP 1 Score: 298 bits (762), Expect = 5.530e-97
Identity = 159/216 (73.61%), Postives = 188/216 (87.04%), Query Frame = 1 
Query:    1 QNGLAFLFSSAAVATSTASPALSDDETD-LDDDSKQKIVQALKEALQGIGELGVDTAGEDERSSTPKDVLNASSDVLPNRTPFEMQYELFKRGMELEDDDNFVGAEKQWTEIIENFNSPNFRATSPGNKFLLARAYSNRGNTRLSLQKTREAILDYSESIDLMPEKGEFWMARGVAYEDMADRKIMAQ-DRNMAMARTFYESALADYDHAVVLDPQ 642
            +NGL+ L  S AVA+  ASPA+++ ++D LD+++KQKI QAL EAL+G+  + +   G     +  K+VL ASSDVLPNR+PFEMQYELFKRGMEL+D D+FVGAE+QWTEIIENFNSPNFRATSPGNK LLARAYSNRGNTRLSLQKTREAILDYSESIDL+PEKGEFW+ARGVA+EDMADRK++A+ DRN+ +ARTFYESALADYDHAVVLDPQ
Sbjct:   73 KNGLSLLVGSVAVAS--ASPAVAETDSDELDEETKQKITQALMEALEGMEGVELTPGG----GAQSKEVLKASSDVLPNRSPFEMQYELFKRGMELQDADDFVGAERQWTEIIENFNSPNFRATSPGNKVLLARAYSNRGNTRLSLQKTREAILDYSESIDLVPEKGEFWLARGVAFEDMADRKVLARADRNVEVARTFYESALADYDHAVVLDPQ 282
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BLAST of mRNA_H-elongata_contig17905.4736.1 vs. uniprot
Match: A0A835Z1G2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1G2_9STRA)

HSP 1 Score: 167 bits (424), Expect = 5.090e-47
Identity = 84/151 (55.63%), Postives = 109/151 (72.19%), Query Frame = 1 
Query:  223 VLPNRTPFEMQYELFKRGMELEDDDNFVGAEKQWTE------------IIENFNSPNFRATSPGNKFLLARAYSNRGNTRLSLQKTREAILDYSESIDLMPEKGEFWMARGVAYEDMADRKIMAQDRNMAMARTFYESALADYDHAVVLDP 639
             LPNR+PFE+QYE+FK GMELE D++FV AEKQWTE            IIE   +P +R +S GN++LLARA++NRG  R SL + REAILDYSE++ L+P+K EFW++RG+AYE +AD K+     +    R FYESAL+DYD A+VLDP
Sbjct:   30 TLPNRSPFELQYEMFKNGMELEGDEDFVAAEKQWTEVNLLSTLHDSLQIIEELETPAWRESSTGNRYLLARAHANRGGARASLGRQREAILDYSEALTLVPDKCEFWLSRGLAYEGLADMKVAMDGCSQEGVRVFYESALSDYDGALVLDP 180
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BLAST of mRNA_H-elongata_contig17905.4736.1 vs. uniprot
Match: W7TS28_9STRA (Tetratricopeptide tpr_1 repeat-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS28_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.180e-24
Identity = 57/132 (43.18%), Postives = 92/132 (69.70%), Query Frame = 1 
Query:  247 EMQYELFKRGMELEDDDNFVGAEKQWTEIIENFNSPNFRATSPGNKFLLARAYSNRGNTRLSLQKTREAILDYSESIDLMPEKGEFWMARGVAYEDMADRKIMAQDRNMAMARTFYESALADYDHAVVLDPQ 642
            E+++E+ K+G++L     F  AE  +TE+I  F+S ++ + S   K L+A+A+SNRGN R SL +  EA+LDYS SI+L P+  E+W  RG+A+E +AD  +  ++++   A  FYE+A+ADY+HA+V+DP+
Sbjct:  137 ELRFEMLKKGLDLTHAFQFEEAEDVYTELIGLFDS-DYTSLSDQEKQLVAKAFSNRGNVRCSLTRVSEALLDYSRSIELCPDTAEYWTNRGLAFEVIADALLATREKD---AFQFYETAIADYEHALVMDPE 264
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BLAST of mRNA_H-elongata_contig17905.4736.1 vs. uniprot
Match: A0A0G4F1G1_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F1G1_VITBC)

HSP 1 Score: 101 bits (251), Expect = 1.490e-21
Identity = 59/163 (36.20%), Postives = 98/163 (60.12%), Query Frame = 1 
Query:  178 ERSSTPKDVLNASSDVL----PNRTP-----FEMQYELFKRGMELEDDDNFVGAEKQWTEIIENFNSPNFRATSPGNKFLLARAYSNRGNTRLSLQKTREAILDYSESIDLMPEKGEFWMARGVAYEDMADRKIMAQDRNMAMARTFYESALADYDHAVVLDP 639
            E++  P D    S  V     P  +P     F+ QY LFK G+E     +F  AE  +TEII+++ +P  + +    +F+LARAY++RGNTR+SL +  +A++DYS +I+  P++ +FW+ R +A E  A++ + +   ++  A  +Y+ AL DY+HA+VL P
Sbjct:  107 EQTQQPVDTTKPSRTVELLGGPGASPGRLSEFQRQYSLFKAGLEETAKFDFKEAEGIFTEIIDSYETPKAKESERA-RFMLARAYTDRGNTRVSLGELNKALVDYSCAIEYAPDEADFWLNRAIACEQKAEQSLTS---SLQFANQWYKEALEDYEHALVLKP 265
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17905.4736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FIQ0_ECTSI1.230e-10075.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBX7_9PHAE5.530e-9773.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z1G2_9STRA5.090e-4755.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TS28_9STRA1.180e-2443.18Tetratricopeptide tpr_1 repeat-containing protein ... [more]
A0A0G4F1G1_VITBC1.490e-2136.20Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17905contigH-elongata_contig17905:255..1287 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.4
Seed ortholog evalue5.3e-81
Seed eggNOG ortholog2880.D7FIQ0
EggNOG free text desc.Tetratricopeptide repeat
EggNOG OGs2D3S9@1,2SSJM@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-27_000610.1
Exons2
Model size642
Cds size642
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930033.2893372-CDS-H-elongata_contig17905:254..3651622930033.2893372-CDS-H-elongata_contig17905:254..365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17905 255..365 -
1691679254.728929-CDS-H-elongata_contig17905:254..3651691679254.728929-CDS-H-elongata_contig17905:254..365Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17905 255..365 -
1622930033.310921-CDS-H-elongata_contig17905:756..12871622930033.310921-CDS-H-elongata_contig17905:756..1287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17905 757..1287 -
1691679254.7386818-CDS-H-elongata_contig17905:756..12871691679254.7386818-CDS-H-elongata_contig17905:756..1287Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17905 757..1287 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17905.4736.1prot_H-elongata_contig17905.4736.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17905 255..1287 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17905.4736.1

>prot_H-elongata_contig17905.4736.1 ID=prot_H-elongata_contig17905.4736.1|Name=mRNA_H-elongata_contig17905.4736.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=214bp
QNGLAFLFSSAAVATSTASPALSDDETDLDDDSKQKIVQALKEALQGIGE
LGVDTAGEDERSSTPKDVLNASSDVLPNRTPFEMQYELFKRGMELEDDDN
FVGAEKQWTEIIENFNSPNFRATSPGNKFLLARAYSNRGNTRLSLQKTRE
AILDYSESIDLMPEKGEFWMARGVAYEDMADRKIMAQDRNMAMARTFYES
ALADYDHAVVLDPQ
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mRNA from alignment at H-elongata_contig17905:255..1287-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17905.4736.1 ID=mRNA_H-elongata_contig17905.4736.1|Name=mRNA_H-elongata_contig17905.4736.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1033bp|location=Sequence derived from alignment at H-elongata_contig17905:255..1287- (Himanthalia elongata Himel1 dioecious)
CAGAATGGTCTTGCGTTCCTCTTCAGCTCTGCCGCAGTGGCGACATCGAC
GGCATCGCCTGCCCTCTCTGACGACGAGACGGATTTGGACGATGATTCCA
AACAAAAGATCGTCCAGGCGCTCAAGGAAGCCCTCCAGGGGATAGGCGAG
CTCGGGGTGGATACGGCCGGGGAGGACGAGCGCTCCTCGACCCCGAAGGA
CGTGCTCAACGCGTCGTCCGACGTGCTACCGAACCGGACACCCTTCGAGA
TGCAGTACGAGCTGTTCAAGAGGGGGATGGAGCTGGAGGATGACGACAAC
TTCGTCGGGGCGGAGAAGCAATGGACCGAGATCATCGAAAACTTCAACTC
CCCCAACTTCCGTGCGACAAGCCCCGGGAATAAGTTCCTTCTAGCGAGGG
CCTACAGTAACCGCGGCAACACGAGGCTGTCGTTGCAGAAGACCCGCGAG
GCGATCCTGGACTACAGCGAGTCAATCGACCTCATGCCGGAAAAGGGGGA
GTTCTGGATGGCTCGTGGCGTCGCGTACGAGGTTGGCACGCGCGCCTCGT
TGTTTGCTTGTTTTGTTATTGTTTAGTGTAATATATTTATTTTAGTATGC
CTTCGGTATGTTATTCTGACTATTTCATCTGTTTCCCTGGTTCCGTGCTG
TTGCCGGGATGACCGGACACCTTCTTGATGTCCTTTATATATATATACAA
TATATCAAAACGAACCGGACCGTTCGACTTGCTTGCCGAAGCGCTCACCC
TGAACTGCCTGAGAAATATTTTTGAGCGTCGGTTGAGCATCCGTTTTGAC
CACGTCATGGTCGCCGGTTGACGCTGGCGTCTATGTCTTGGTGTATGTTT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGT
TTGTGTTTTTTGGATCGACCAGGACATGGCGGATCGAAAGATAATGGCGC
AAGATCGAAACATGGCGATGGCGCGAACGTTCTACGAGAGCGCTCTAGCC
GACTACGACCACGCCGTTGTCTTGGACCCGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig17905:255..1287-

>mRNA_H-elongata_contig17905.4736.1 ID=mRNA_H-elongata_contig17905.4736.1|Name=mRNA_H-elongata_contig17905.4736.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1284bp|location=Sequence derived from alignment at H-elongata_contig17905:255..1287- (Himanthalia elongata Himel1 dioecious)
CAGAATGGTCTTGCGTTCCTCTTCAGCTCTGCCGCAGTGGCGACATCGAC
GGCATCGCCTGCCCTCTCTGACGACGAGACGGATTTGGACGATGATTCCA
AACAAAAGATCGTCCAGGCGCTCAAGGAAGCCCTCCAGGGGATAGGCGAG
CTCGGGGTGGATACGGCCGGGGAGGACGAGCGCTCCTCGACCCCGAAGGA
CGTGCTCAACGCGTCGTCCGACGTGCTACCGAACCGGACACCCTTCGAGA
TGCAGTACGAGCTGTTCAAGAGGGGGATGGAGCTGGAGGATGACGACAAC
TTCGTCGGGGCGGAGAAGCAATGGACCGAGATCATCGAAAACTTCAACTC
CCCCAACTTCCGTGCGACAAGCCCCGGGAATAAGTTCCTTCTAGCGAGGG
CCTACAGTAACCGCGGCAACACGAGGCTGTCGTTGCAGAAGACCCGCGAG
GCGATCCTGGACTACAGCGAGTCAATCGACCTCATGCCGGAAAAGGGGGA
GTTCTGGATGGCTCGTGGCGTCGCGTACGAGCAGAATGGTCTTGCGTTCC
TCTTCAGCTCTGCCGCAGTGGCGACATCGACGGCATCGCCTGCCCTCTCT
GACGACGAGACGGATTTGGACGATGATTCCAAACAAAAGATCGTCCAGGC
GCTCAAGGAAGCCCTCCAGGGGATAGGCGAGCTCGGGGTGGATACGGCCG
GGGAGGACGAGCGCTCCTCGACCCCGAAGGACGTGCTCAACGCGTCGTCC
GACGTGCTACCGAACCGGACACCCTTCGAGATGCAGTACGAGCTGTTCAA
GAGGGGGATGGAGCTGGAGGATGACGACAACTTCGTCGGGGCGGAGAAGC
AATGGACCGAGATCATCGAAAACTTCAACTCCCCCAACTTCCGTGCGACA
AGCCCCGGGAATAAGTTCCTTCTAGCGAGGGCCTACAGTAACCGCGGCAA
CACGAGGCTGTCGTTGCAGAAGACCCGCGAGGCGATCCTGGACTACAGCG
AGTCAATCGACCTCATGCCGGAAAAGGGGGAGTTCTGGATGGCTCGTGGC
GTCGCGTACGAGGACATGGCGGATCGAAAGATAATGGCGCAAGATCGAAA
CATGGCGATGGCGCGAACGTTCTACGAGAGCGCTCTAGCCGACTACGACC
ACGCCGTTGTCTTGGACCCGCAGGACATGGCGGATCGAAAGATAATGGCG
CAAGATCGAAACATGGCGATGGCGCGAACGTTCTACGAGAGCGCTCTAGC
CGACTACGACCACGCCGTTGTCTTGGACCCGCAG
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