mRNA_H-elongata_contig179014.4734.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig179014.4734.1
Unique NamemRNA_H-elongata_contig179014.4734.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: D8LKZ5_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKZ5_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 9.660e-18
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 1
Query:    1 GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMTL 159
            GR VR+PRAVKG RV  MTF ELCG ALGAADY A+SEAFHT+F+ GVP M L
Sbjct:  336 GRSVRIPRAVKGGRVAMMTFDELCGKALGAADYTAISEAFHTLFVHGVPMMNL 388          
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: A0A7S2SSF0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSF0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 4.740e-12
Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    1 GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMTL 159
            GREV++PRA    RV R +F ELCG A+GAADY+A+  AF T+FI  +P++TL
Sbjct:  363 GREVQIPRASLSTRVARFSFLELCGKAVGAADYIAIGSAFPTVFIEDIPRLTL 415          
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: A0A812KC57_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812KC57_SYMPI)

HSP 1 Score: 64.7 bits (156), Expect = 6.760e-12
Identity = 25/53 (47.17%), Postives = 40/53 (75.47%), Query Frame = 1
Query:    1 GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMTL 159
            GR++ +PR  +G++V    F +LC  ALGAADY+A+  AFHT+F++ +PK+T+
Sbjct:    6 GRKIGIPRCAEGSKVAWFEFSDLCNKALGAADYLAIGRAFHTVFLADIPKLTM 58          
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: A0A1Q9E416_SYMMI (Calmodulin n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9E416_SYMMI)

HSP 1 Score: 65.9 bits (159), Expect = 3.140e-11
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMTL 159
            GR+V VPR  + + V   TF +LC  ALGAADY+A+  AFHT+FIS +P++T+
Sbjct:  895 GRKVNVPRCAENSDVAWFTFSDLCNQALGAADYLAVGNAFHTVFISNIPRLTM 947          
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: A0A836C7Q8_9STRA (AFG1-like ATPase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Q8_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 5.830e-11
Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 1
Query:    1 GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMTL 159
            G +V VP AV   R+ R TF ELCG  LGAADY A++ AFHT+FI+ VP+MTL
Sbjct:  343 GHDVAVPCAVIAARMARFTFAELCGLPLGAADYGAVAAAFHTVFITRVPRMTL 395          
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: A0A7S0HW54_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HW54_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 6.120e-11
Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMTL 159
            GRE+ VP A +   V R +F ELCG  LGAADY+ ++ AFHT+F++ +P+ TL
Sbjct:  114 GREIPVPSAGRSTAVARFSFTELCGRPLGAADYLGIAAAFHTVFLTDIPRFTL 166          
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: A0A7S3JPQ8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPQ8_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.960e-11
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMTL 159
            GREV VPRA    R    TF +LCGSALGAADY+A+++A H +F+ GVP M L
Sbjct:  293 GREVHVPRADLACRAGYFTFDQLCGSALGAADYLAIAQALHVVFVDGVPIMDL 345          
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: A0A8J5XKK8_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XKK8_DIALT)

HSP 1 Score: 63.5 bits (153), Expect = 2.030e-10
Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1
Query:    1 GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMT 156
            GRE+ VPRA     V R  F ELC   LGA D++A++ AFHT+F+SGVP+MT
Sbjct:  309 GRELHVPRASPHAAVARFDFDELCARPLGAEDFLALAAAFHTLFVSGVPRMT 360          
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: A0A812PMG7_9DINO (Calmodulin n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812PMG7_9DINO)

HSP 1 Score: 63.2 bits (152), Expect = 2.780e-10
Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    1 GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMTL 159
            GR+V VPR  + + +    F +LC  ALGAADY+A+  AFHT+FIS +P++T+
Sbjct:  291 GRKVNVPRCAENSGIAWFAFSDLCDQALGAADYLAIGNAFHTVFISNIPRLTM 343          
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: A9TTK9_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TTK9_PHYPA)

HSP 1 Score: 62.8 bits (151), Expect = 3.230e-10
Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 1
Query:    4 REVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMT 156
            R + VP+A  G  V   TF+ELCG+A GAADY+A++ +FHT+FISG+P++T
Sbjct:  252 RTIEVPKAAGG--VAAFTFKELCGAAKGAADYLAIASSFHTVFISGIPRLT 300          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKZ5_ECTSI9.660e-1873.58EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2SSF0_9STRA4.740e-1256.60Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A812KC57_SYMPI6.760e-1247.17Hypothetical protein n=1 Tax=Symbiodinium pilosum ... [more]
A0A1Q9E416_SYMMI3.140e-1152.83Calmodulin n=1 Tax=Symbiodinium microadriaticum Ta... [more]
A0A836C7Q8_9STRA5.830e-1160.38AFG1-like ATPase-domain-containing protein n=1 Tax... [more]
A0A7S0HW54_9EUKA6.120e-1150.94Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A7S3JPQ8_9STRA7.960e-1158.49Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J5XKK8_DIALT2.030e-1055.77Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A812PMG7_9DINO2.780e-1049.06Calmodulin n=1 Tax=Symbiodinium natans TaxID=87847... [more]
A9TTK9_PHYPA3.230e-1054.90Predicted protein (Fragment) n=1 Tax=Physcomitrium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig179014contigH-elongata_contig179014:670..828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue4.8e-15
Seed eggNOG ortholog2880.D8LKZ5
KEGG koko:K18798
EggNOG free text desc.ATP binding
EggNOG OGsCOG1485@1,KOG2383@2759
EC3.6.4.7
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930033.0955904-CDS-H-elongata_contig179014:669..8281622930033.0955904-CDS-H-elongata_contig179014:669..828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179014 670..828 -
1691679254.6054294-CDS-H-elongata_contig179014:669..8281691679254.6054294-CDS-H-elongata_contig179014:669..828Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig179014 670..828 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig179014.4734.1prot_H-elongata_contig179014.4734.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig179014 670..828 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig179014.4734.1

>prot_H-elongata_contig179014.4734.1 ID=prot_H-elongata_contig179014.4734.1|Name=mRNA_H-elongata_contig179014.4734.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp
GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPK
MTL
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mRNA from alignment at H-elongata_contig179014:670..828-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig179014.4734.1 ID=mRNA_H-elongata_contig179014.4734.1|Name=mRNA_H-elongata_contig179014.4734.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig179014:670..828- (Himanthalia elongata Himel1 dioecious)
GGAAGGGAGGTGCGCGTCCCGCGAGCTGTGAAGGGGAACCGCGTGGTGAG GATGACGTTCCAAGAACTTTGTGGTAGTGCCCTGGGCGCGGCGGACTACG TGGCCATGTCGGAGGCCTTCCACACAATATTCATTAGCGGTGTGCCCAAG ATGACCCTC
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Coding sequence (CDS) from alignment at H-elongata_contig179014:670..828-

>mRNA_H-elongata_contig179014.4734.1 ID=mRNA_H-elongata_contig179014.4734.1|Name=mRNA_H-elongata_contig179014.4734.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig179014:670..828- (Himanthalia elongata Himel1 dioecious)
GGAAGGGAGGTGCGCGTCCCGCGAGCTGTGAAGGGGAACCGCGTGGTGAG
GATGACGTTCCAAGAACTTTGTGGTAGTGCCCTGGGCGCGGCGGACTACG
TGGCCATGTCGGAGGCCTTCCACACAATATTCATTAGCGGTGTGCCCAAG
ATGACCCTCGGAAGGGAGGTGCGCGTCCCGCGAGCTGTGAAGGGGAACCG
CGTGGTGAGGATGACGTTCCAAGAACTTTGTGGTAGTGCCCTGGGCGCGG
CGGACTACGTGGCCATGTCGGAGGCCTTCCACACAATATTCATTAGCGGT
GTGCCCAAGATGACCCTC
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