mRNA_H-elongata_contig179014.4734.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: D8LKZ5_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKZ5_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 9.660e-18 Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 1
Query: 1 GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMTL 159
GR VR+PRAVKG RV MTF ELCG ALGAADY A+SEAFHT+F+ GVP M L
Sbjct: 336 GRSVRIPRAVKGGRVAMMTFDELCGKALGAADYTAISEAFHTLFVHGVPMMNL 388
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: A0A7S2SSF0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSF0_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 4.740e-12 Identity = 30/53 (56.60%), Postives = 40/53 (75.47%), Query Frame = 1
Query: 1 GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMTL 159
GREV++PRA RV R +F ELCG A+GAADY+A+ AF T+FI +P++TL
Sbjct: 363 GREVQIPRASLSTRVARFSFLELCGKAVGAADYIAIGSAFPTVFIEDIPRLTL 415
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: A0A812KC57_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812KC57_SYMPI) HSP 1 Score: 64.7 bits (156), Expect = 6.760e-12 Identity = 25/53 (47.17%), Postives = 40/53 (75.47%), Query Frame = 1
Query: 1 GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMTL 159
GR++ +PR +G++V F +LC ALGAADY+A+ AFHT+F++ +PK+T+
Sbjct: 6 GRKIGIPRCAEGSKVAWFEFSDLCNKALGAADYLAIGRAFHTVFLADIPKLTM 58
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: A0A1Q9E416_SYMMI (Calmodulin n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9E416_SYMMI) HSP 1 Score: 65.9 bits (159), Expect = 3.140e-11 Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 1 GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMTL 159
GR+V VPR + + V TF +LC ALGAADY+A+ AFHT+FIS +P++T+
Sbjct: 895 GRKVNVPRCAENSDVAWFTFSDLCNQALGAADYLAVGNAFHTVFISNIPRLTM 947
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: A0A836C7Q8_9STRA (AFG1-like ATPase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Q8_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 5.830e-11 Identity = 32/53 (60.38%), Postives = 39/53 (73.58%), Query Frame = 1
Query: 1 GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMTL 159
G +V VP AV R+ R TF ELCG LGAADY A++ AFHT+FI+ VP+MTL
Sbjct: 343 GHDVAVPCAVIAARMARFTFAELCGLPLGAADYGAVAAAFHTVFITRVPRMTL 395
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: A0A7S0HW54_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HW54_9EUKA) HSP 1 Score: 63.2 bits (152), Expect = 6.120e-11 Identity = 27/53 (50.94%), Postives = 38/53 (71.70%), Query Frame = 1
Query: 1 GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMTL 159
GRE+ VP A + V R +F ELCG LGAADY+ ++ AFHT+F++ +P+ TL
Sbjct: 114 GREIPVPSAGRSTAVARFSFTELCGRPLGAADYLGIAAAFHTVFLTDIPRFTL 166
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: A0A7S3JPQ8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPQ8_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 7.960e-11 Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1
Query: 1 GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMTL 159
GREV VPRA R TF +LCGSALGAADY+A+++A H +F+ GVP M L
Sbjct: 293 GREVHVPRADLACRAGYFTFDQLCGSALGAADYLAIAQALHVVFVDGVPIMDL 345
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: A0A8J5XKK8_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XKK8_DIALT) HSP 1 Score: 63.5 bits (153), Expect = 2.030e-10 Identity = 29/52 (55.77%), Postives = 37/52 (71.15%), Query Frame = 1
Query: 1 GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMT 156
GRE+ VPRA V R F ELC LGA D++A++ AFHT+F+SGVP+MT
Sbjct: 309 GRELHVPRASPHAAVARFDFDELCARPLGAEDFLALAAAFHTLFVSGVPRMT 360
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: A0A812PMG7_9DINO (Calmodulin n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812PMG7_9DINO) HSP 1 Score: 63.2 bits (152), Expect = 2.780e-10 Identity = 26/53 (49.06%), Postives = 38/53 (71.70%), Query Frame = 1
Query: 1 GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMTL 159
GR+V VPR + + + F +LC ALGAADY+A+ AFHT+FIS +P++T+
Sbjct: 291 GRKVNVPRCAENSGIAWFAFSDLCDQALGAADYLAIGNAFHTVFISNIPRLTM 343
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Match: A9TTK9_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9TTK9_PHYPA) HSP 1 Score: 62.8 bits (151), Expect = 3.230e-10 Identity = 28/51 (54.90%), Postives = 40/51 (78.43%), Query Frame = 1
Query: 4 REVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKMT 156
R + VP+A G V TF+ELCG+A GAADY+A++ +FHT+FISG+P++T
Sbjct: 252 RTIEVPKAAGG--VAAFTFKELCGAAKGAADYLAIASSFHTVFISGIPRLT 300 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig179014.4734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig179014.4734.1 >prot_H-elongata_contig179014.4734.1 ID=prot_H-elongata_contig179014.4734.1|Name=mRNA_H-elongata_contig179014.4734.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=53bp GREVRVPRAVKGNRVVRMTFQELCGSALGAADYVAMSEAFHTIFISGVPKback to top mRNA from alignment at H-elongata_contig179014:670..828- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig179014.4734.1 ID=mRNA_H-elongata_contig179014.4734.1|Name=mRNA_H-elongata_contig179014.4734.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=159bp|location=Sequence derived from alignment at H-elongata_contig179014:670..828- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig179014:670..828- >mRNA_H-elongata_contig179014.4734.1 ID=mRNA_H-elongata_contig179014.4734.1|Name=mRNA_H-elongata_contig179014.4734.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=318bp|location=Sequence derived from alignment at H-elongata_contig179014:670..828- (Himanthalia elongata Himel1 dioecious)back to top |