prot_H-elongata_contig178933.4728.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig178933.4728.1
Unique Nameprot_H-elongata_contig178933.4728.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length63
Homology
BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: A0A6H5JU39_9PHAE (DNA-directed RNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU39_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.810e-32
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 0
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 62
            +V IAQEFRDHV YFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDE++PLG++GLYWLKV
Sbjct:  709 KVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDEAKPLGEKGLYWLKV 770          
BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: A0A4D9D3J6_9STRA (DNA-directed RNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3J6_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.610e-24
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 0
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 62
            ++ IA+EFR+H FYFPYN+DFRGR YP+PPNLN LGSD  RG+L F E RPLGK GL WLK+
Sbjct:  651 KLSIAEEFRNHTFYFPYNLDFRGRAYPVPPNLNHLGSDMCRGMLRFAEKRPLGKNGLRWLKI 712          
BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: A0A7S2HVI8_9STRA (DNA-directed RNA polymerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HVI8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.080e-23
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 0
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 62
            ++ IAQE RD+V YFPYN+DFRGR YPIPPNLN LGSD  RG+L F++ +PLG++GL+WLKV
Sbjct:  180 KLNIAQENRDYVIYFPYNLDFRGRAYPIPPNLNHLGSDLCRGLLKFEKKKPLGEKGLWWLKV 241          
BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: A0A7S2HVK7_9STRA (DNA-directed RNA polymerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HVK7_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.140e-23
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 0
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 62
            ++ IAQE RD+V YFPYN+DFRGR YPIPPNLN LGSD  RG+L F++ +PLG++GL+WLKV
Sbjct:  438 KLNIAQENRDYVIYFPYNLDFRGRAYPIPPNLNHLGSDLCRGLLKFEKKKPLGEKGLWWLKV 499          
BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: E0XNZ6_SPOSA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Sporidiobolus salmonicolor TaxID=5005 RepID=E0XNZ6_SPOSA)

HSP 1 Score: 90.5 bits (223), Expect = 1.620e-21
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 0
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 62
            ++ IA+ F D  FYFP+N+DFRGR YPIPPNL+ +G D  RG+L+F E++PLG+RGL WLK+
Sbjct:    4 KLEIARAFIDEKFYFPHNLDFRGRAYPIPPNLSHIGDDMCRGLLLFGEAKPLGERGLRWLKI 65          
BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: A0A5C3L8L0_9AGAR (DNA-directed RNA polymerase n=1 Tax=Coprinopsis marcescibilis TaxID=230819 RepID=A0A5C3L8L0_9AGAR)

HSP 1 Score: 95.5 bits (236), Expect = 1.800e-21
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 0
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 62
            ++ IA+ F D   YFP+NMDFRGR YP+PP+LN +G D SRG+LMF+E+RPLG+RGL WLK+
Sbjct:  664 KIEIARAFLDETIYFPHNMDFRGRAYPLPPHLNHIGDDLSRGLLMFNEARPLGERGLRWLKI 725          
BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: A0A6P9B1T6_PANGU (DNA-directed RNA polymerase n=1 Tax=Pantherophis guttatus TaxID=94885 RepID=A0A6P9B1T6_PANGU)

HSP 1 Score: 93.2 bits (230), Expect = 2.280e-21
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 0
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 62
            ++ IA+  +D VF+FP+N+DFRGRTYP PP+ N LG DF+RG+L+F E +PLG RGL WLK+
Sbjct:  166 KLSIAKHMKDEVFWFPHNLDFRGRTYPCPPHFNHLGGDFTRGILLFAEGKPLGSRGLDWLKI 227          
BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: D2VYC1_NAEGR (DNA-directed RNA polymerase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VYC1_NAEGR)

HSP 1 Score: 95.1 bits (235), Expect = 2.460e-21
Identity = 35/62 (56.45%), Postives = 54/62 (87.10%), Query Frame = 0
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 62
            ++ +A++F+D+ FYFP+N+DFRGR YPIPP+LN LG+D +RG+L F++  P+GKRG++WLK+
Sbjct:  500 KLKVAEDFKDNTFYFPHNIDFRGRAYPIPPHLNHLGADINRGLLTFEKGMPIGKRGIFWLKI 561          
BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: Q0R0H7_9EUKA (DNA-directed RNA polymerase n=1 Tax=Naegleria sp. TES-2005 TaxID=345065 RepID=Q0R0H7_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 2.460e-21
Identity = 35/62 (56.45%), Postives = 54/62 (87.10%), Query Frame = 0
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 62
            ++ +A++F+D+ FYFP+N+DFRGR YPIPP+LN LG+D +RG+L F++  P+GKRG++WLK+
Sbjct:  535 KLKVAEDFKDNAFYFPHNIDFRGRAYPIPPHLNHLGADINRGLLTFEKGMPIGKRGIFWLKI 596          
BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: A0A2D4JCF5_MICLE (DNA-directed RNA polymerase (Fragment) n=1 Tax=Micrurus lemniscatus lemniscatus TaxID=129467 RepID=A0A2D4JCF5_MICLE)

HSP 1 Score: 90.9 bits (224), Expect = 2.540e-21
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 0
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 62
            ++ IA+  +D VF+FP+N+DFRGRTYP PP+ N LG DF+RG+L+F E +PLG  GL WLK+
Sbjct:   54 KLSIAKHMKDEVFWFPHNLDFRGRTYPCPPHFNHLGGDFTRGILLFAEGKPLGPNGLDWLKI 115          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JU39_9PHAE3.810e-3288.71DNA-directed RNA polymerase n=2 Tax=Ectocarpus Tax... [more]
A0A4D9D3J6_9STRA2.610e-2469.35DNA-directed RNA polymerase n=2 Tax=Monodopsidacea... [more]
A0A7S2HVI8_9STRA3.080e-2367.74DNA-directed RNA polymerase n=1 Tax=Dictyocha spec... [more]
A0A7S2HVK7_9STRA3.140e-2367.74DNA-directed RNA polymerase n=1 Tax=Dictyocha spec... [more]
E0XNZ6_SPOSA1.620e-2159.68DNA-directed RNA polymerase (Fragment) n=1 Tax=Spo... [more]
A0A5C3L8L0_9AGAR1.800e-2162.90DNA-directed RNA polymerase n=1 Tax=Coprinopsis ma... [more]
A0A6P9B1T6_PANGU2.280e-2159.68DNA-directed RNA polymerase n=1 Tax=Pantherophis g... [more]
D2VYC1_NAEGR2.460e-2156.45DNA-directed RNA polymerase n=1 Tax=Naegleria grub... [more]
Q0R0H7_9EUKA2.460e-2156.45DNA-directed RNA polymerase n=1 Tax=Naegleria sp. ... [more]
A0A2D4JCF5_MICLE2.540e-2158.06DNA-directed RNA polymerase (Fragment) n=1 Tax=Mic... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10102:SF0DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIALcoord: 3..62
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 2..62
IPR002092DNA-directed RNA polymerase, phage-typePANTHERPTHR10102DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIALcoord: 3..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig178933contigH-elongata_contig178933:444..632 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig178933.4728.1mRNA_H-elongata_contig178933.4728.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig178933 444..632 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig178933.4728.1 ID=prot_H-elongata_contig178933.4728.1|Name=mRNA_H-elongata_contig178933.4728.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESR
PLGKRGLYWLKV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002092DNA-dir_Rpol_phage-type