mRNA_H-elongata_contig178933.4728.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig178933.4728.1
Unique NamemRNA_H-elongata_contig178933.4728.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: A0A6H5JU39_9PHAE (DNA-directed RNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JU39_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 3.810e-32
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1 
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 186
            +V IAQEFRDHV YFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDE++PLG++GLYWLKV
Sbjct:  709 KVDIAQEFRDHVIYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDEAKPLGEKGLYWLKV 770
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BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: A0A4D9D3J6_9STRA (DNA-directed RNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D3J6_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.610e-24
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 186
            ++ IA+EFR+H FYFPYN+DFRGR YP+PPNLN LGSD  RG+L F E RPLGK GL WLK+
Sbjct:  651 KLSIAEEFRNHTFYFPYNLDFRGRAYPVPPNLNHLGSDMCRGMLRFAEKRPLGKNGLRWLKI 712
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BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: A0A7S2HVI8_9STRA (DNA-directed RNA polymerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HVI8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.080e-23
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 186
            ++ IAQE RD+V YFPYN+DFRGR YPIPPNLN LGSD  RG+L F++ +PLG++GL+WLKV
Sbjct:  180 KLNIAQENRDYVIYFPYNLDFRGRAYPIPPNLNHLGSDLCRGLLKFEKKKPLGEKGLWWLKV 241
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BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: A0A7S2HVK7_9STRA (DNA-directed RNA polymerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HVK7_9STRA)

HSP 1 Score: 100 bits (249), Expect = 3.140e-23
Identity = 42/62 (67.74%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 186
            ++ IAQE RD+V YFPYN+DFRGR YPIPPNLN LGSD  RG+L F++ +PLG++GL+WLKV
Sbjct:  438 KLNIAQENRDYVIYFPYNLDFRGRAYPIPPNLNHLGSDLCRGLLKFEKKKPLGEKGLWWLKV 499
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BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: E0XNZ6_SPOSA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Sporidiobolus salmonicolor TaxID=5005 RepID=E0XNZ6_SPOSA)

HSP 1 Score: 90.5 bits (223), Expect = 1.620e-21
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 186
            ++ IA+ F D  FYFP+N+DFRGR YPIPPNL+ +G D  RG+L+F E++PLG+RGL WLK+
Sbjct:    4 KLEIARAFIDEKFYFPHNLDFRGRAYPIPPNLSHIGDDMCRGLLLFGEAKPLGERGLRWLKI 65
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BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: A0A5C3L8L0_9AGAR (DNA-directed RNA polymerase n=1 Tax=Coprinopsis marcescibilis TaxID=230819 RepID=A0A5C3L8L0_9AGAR)

HSP 1 Score: 95.5 bits (236), Expect = 1.800e-21
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 186
            ++ IA+ F D   YFP+NMDFRGR YP+PP+LN +G D SRG+LMF+E+RPLG+RGL WLK+
Sbjct:  664 KIEIARAFLDETIYFPHNMDFRGRAYPLPPHLNHIGDDLSRGLLMFNEARPLGERGLRWLKI 725
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BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: A0A6P9B1T6_PANGU (DNA-directed RNA polymerase n=1 Tax=Pantherophis guttatus TaxID=94885 RepID=A0A6P9B1T6_PANGU)

HSP 1 Score: 93.2 bits (230), Expect = 2.280e-21
Identity = 37/62 (59.68%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 186
            ++ IA+  +D VF+FP+N+DFRGRTYP PP+ N LG DF+RG+L+F E +PLG RGL WLK+
Sbjct:  166 KLSIAKHMKDEVFWFPHNLDFRGRTYPCPPHFNHLGGDFTRGILLFAEGKPLGSRGLDWLKI 227
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BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: D2VYC1_NAEGR (DNA-directed RNA polymerase n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VYC1_NAEGR)

HSP 1 Score: 95.1 bits (235), Expect = 2.460e-21
Identity = 35/62 (56.45%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 186
            ++ +A++F+D+ FYFP+N+DFRGR YPIPP+LN LG+D +RG+L F++  P+GKRG++WLK+
Sbjct:  500 KLKVAEDFKDNTFYFPHNIDFRGRAYPIPPHLNHLGADINRGLLTFEKGMPIGKRGIFWLKI 561
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BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: Q0R0H7_9EUKA (DNA-directed RNA polymerase n=1 Tax=Naegleria sp. TES-2005 TaxID=345065 RepID=Q0R0H7_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 2.460e-21
Identity = 35/62 (56.45%), Postives = 54/62 (87.10%), Query Frame = 1 
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 186
            ++ +A++F+D+ FYFP+N+DFRGR YPIPP+LN LG+D +RG+L F++  P+GKRG++WLK+
Sbjct:  535 KLKVAEDFKDNAFYFPHNIDFRGRAYPIPPHLNHLGADINRGLLTFEKGMPIGKRGIFWLKI 596
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BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Match: A0A2D4JCF5_MICLE (DNA-directed RNA polymerase (Fragment) n=1 Tax=Micrurus lemniscatus lemniscatus TaxID=129467 RepID=A0A2D4JCF5_MICLE)

HSP 1 Score: 90.9 bits (224), Expect = 2.540e-21
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 1 
Query:    1 QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESRPLGKRGLYWLKV 186
            ++ IA+  +D VF+FP+N+DFRGRTYP PP+ N LG DF+RG+L+F E +PLG  GL WLK+
Sbjct:   54 KLSIAKHMKDEVFWFPHNLDFRGRTYPCPPHFNHLGGDFTRGILLFAEGKPLGPNGLDWLKI 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178933.4728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JU39_9PHAE3.810e-3288.71DNA-directed RNA polymerase n=2 Tax=Ectocarpus Tax... [more]
A0A4D9D3J6_9STRA2.610e-2469.35DNA-directed RNA polymerase n=2 Tax=Monodopsidacea... [more]
A0A7S2HVI8_9STRA3.080e-2367.74DNA-directed RNA polymerase n=1 Tax=Dictyocha spec... [more]
A0A7S2HVK7_9STRA3.140e-2367.74DNA-directed RNA polymerase n=1 Tax=Dictyocha spec... [more]
E0XNZ6_SPOSA1.620e-2159.68DNA-directed RNA polymerase (Fragment) n=1 Tax=Spo... [more]
A0A5C3L8L0_9AGAR1.800e-2162.90DNA-directed RNA polymerase n=1 Tax=Coprinopsis ma... [more]
A0A6P9B1T6_PANGU2.280e-2159.68DNA-directed RNA polymerase n=1 Tax=Pantherophis g... [more]
D2VYC1_NAEGR2.460e-2156.45DNA-directed RNA polymerase n=1 Tax=Naegleria grub... [more]
Q0R0H7_9EUKA2.460e-2156.45DNA-directed RNA polymerase n=1 Tax=Naegleria sp. ... [more]
A0A2D4JCF5_MICLE2.540e-2158.06DNA-directed RNA polymerase (Fragment) n=1 Tax=Mic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig178933contigH-elongata_contig178933:444..632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue5.5e-26
Seed eggNOG ortholog2880.D7FQU5
Preferred namerpom-1
KEGG koko:K00960,ko:K10908,ko:K11446
GOsGO:0000428,GO:0000959,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006351,GO:0006390,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0032774,GO:0032991,GO:0034062,GO:0034245,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0061695,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098798,GO:0140053,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.dna-directed rna polymerase
EggNOG OGsCOG5108@1,KOG1038@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03029,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size189
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930032.4717815-CDS-H-elongata_contig178933:443..6321622930032.4717815-CDS-H-elongata_contig178933:443..632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178933 444..632 +
1691679254.3395684-CDS-H-elongata_contig178933:443..6321691679254.3395684-CDS-H-elongata_contig178933:443..632Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178933 444..632 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig178933.4728.1prot_H-elongata_contig178933.4728.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig178933 444..632 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig178933.4728.1

>prot_H-elongata_contig178933.4728.1 ID=prot_H-elongata_contig178933.4728.1|Name=mRNA_H-elongata_contig178933.4728.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
QVGIAQEFRDHVFYFPYNMDFRGRTYPIPPNLNILGSDFSRGVLMFDESR
PLGKRGLYWLKV*
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mRNA from alignment at H-elongata_contig178933:444..632+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig178933.4728.1 ID=mRNA_H-elongata_contig178933.4728.1|Name=mRNA_H-elongata_contig178933.4728.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=189bp|location=Sequence derived from alignment at H-elongata_contig178933:444..632+ (Himanthalia elongata Himel1 dioecious)
CAGGTGGGCATAGCACAAGAGTTCCGGGACCACGTGTTCTACTTCCCGTA
CAACATGGACTTTCGCGGGCGAACGTACCCCATCCCCCCCAACCTTAACA
TCCTGGGGTCAGACTTCTCGAGAGGGGTGCTCATGTTCGACGAGTCCAGG
CCGCTGGGAAAGCGTGGCCTTTACTGGCTGAAGGTGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig178933:444..632+

>mRNA_H-elongata_contig178933.4728.1 ID=mRNA_H-elongata_contig178933.4728.1|Name=mRNA_H-elongata_contig178933.4728.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig178933:444..632+ (Himanthalia elongata Himel1 dioecious)
CAGGTGGGCATAGCACAAGAGTTCCGGGACCACGTGTTCTACTTCCCGTA
CAACATGGACTTTCGCGGGCGAACGTACCCCATCCCCCCCAACCTTAACA
TCCTGGGGTCAGACTTCTCGAGAGGGGTGCTCATGTTCGACGAGTCCAGG
CCGCTGGGAAAGCGTGGCCTTTACTGGCTGAAGGTGTGACAGGTGGGCAT
AGCACAAGAGTTCCGGGACCACGTGTTCTACTTCCCGTACAACATGGACT
TTCGCGGGCGAACGTACCCCATCCCCCCCAACCTTAACATCCTGGGGTCA
GACTTCTCGAGAGGGGTGCTCATGTTCGACGAGTCCAGGCCGCTGGGAAA
GCGTGGCCTTTACTGGCTGAAGGTGTGA
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