prot_H-elongata_contig17880.4723.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig17880.4723.1
Unique Name	prot_H-elongata_contig17880.4723.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	400

Homology

[Close]

BLAST of mRNA_H-elongata_contig17880.4723.1 vs. uniprot
Match: D7FP11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP11_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 2.020e-45
Identity = 121/362 (33.43%), Postives = 163/362 (45.03%), Query Frame = 0

Query:    5 RISERDKLLLYALSLGAMAGSIIFWDGVYTIFEQHVWDNSLRYHLVCIALGGVGVVWVMTSEEEHGAAGDCNGDGDSKEEVGSEEAKMNAVDATVRMSADIESGNDNGNGSVRNEQAGAWRMTNSTATAETRLETRQARVTADIAMLPLLEKIALYAKGFLGNICGVVFWYGLEHVITDQSPDTVWTGLVSYAAGIMLLMLIWRWKENCGMDS----------------------DEERNKHDVMTSMAT----GATEHD---PG--ELNKAVTLVVGPQLDEP------------RFCW--PPWVTTTLEIAGVVAAWTGVEWYIWDDNYIPRTLYRDPLYIVVGLAVLAVTGTFLELSGT 321
            R+  RD+   YA SL A+ GSI+FWDGVY + ++H W+ +L Y+LVC +LGG G+VWVMTSE+E                           D  +R       G+D G G                A+A  R   R +R+           +  LYAK    N+CGVVFW G+E +I D  P+  WTGLV +  GI +L+   R   N G++                       D   +  D+    ++        +D   PG   L  A T   G  +  P            R C   P WVTT  E+ GVV AWTG+EWY+W+ +YIP +  RD  YI VGL +L  TGTF  L+GT
Sbjct:   66 RLRWRDEAKFYARSLLAIVGSILFWDGVYDLCDEHTWEGTLTYNLVCASLGGAGMVWVMTSEDE---------------------------DERMR-------GDDIGGGPAA-----------MMASAANRSGGRSSRLGPG-------NRGRLYAKALFCNVCGVVFWKGVEEIIEDNGPNKDWTGLVFFVIGISILIATDRLSMNSGLEDGLPPAVDIQAGPAACTIETAAWDASSSNPDLRAPSSSPLLLDVVVNDLSCPGCSRLVAAPTSFGGGNVRSPCGGEGAGSRRRGRGCVEVPRWVTTAAELTGVVFAWTGIEWYVWEGDYIPDSALRDLGYIAVGLGILVGTGTFFNLAGT 375

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig17880.4723.1 vs. uniprot

BLAST of mRNA_H-elongata_contig17880.4723.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FP11_ECTSI	2.020e-45	33.43	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 189..207
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 157..177
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 281..299
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 12..33
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 300..320
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 64..156
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..11
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 34..44
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 321..399
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 45..63
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 208..260
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 178..188
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 261..280
None	No IPR available	TMHMM	TMhelix		coord: 13..35
None	No IPR available	TMHMM	TMhelix		coord: 45..62
None	No IPR available	TMHMM	TMhelix		coord: 158..177
None	No IPR available	TMHMM	TMhelix		coord: 187..209
None	No IPR available	TMHMM	TMhelix		coord: 299..321

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig17880	contig	H-elongata_contig17880:903..4395 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig17880.4723.1	mRNA_H-elongata_contig17880.4723.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig17880 900..6860 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig17880.4723.1 ID=prot_H-elongata_contig17880.4723.1|Name=mRNA_H-elongata_contig17880.4723.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=400bp
MHEKRISERDKLLLYALSLGAMAGSIIFWDGVYTIFEQHVWDNSLRYHLV
CIALGGVGVVWVMTSEEEHGAAGDCNGDGDSKEEVGSEEAKMNAVDATVR
MSADIESGNDNGNGSVRNEQAGAWRMTNSTATAETRLETRQARVTADIAM
LPLLEKIALYAKGFLGNICGVVFWYGLEHVITDQSPDTVWTGLVSYAAGI
MLLMLIWRWKENCGMDSDEERNKHDVMTSMATGATEHDPGELNKAVTLVV
GPQLDEPRFCWPPWVTTTLEIAGVVAAWTGVEWYIWDDNYIPRTLYRDPL
YIVVGLAVLAVTGTFLELSGTPLGGVARRKTETVSMSVLFRRFSSTILGD
SLRGSGKEQQSRNSVESTPDAIPIETRRYPQRFIVYVEEVWKHGETKER*