mRNA_H-elongata_contig17869.4718.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A401GYH9_9APHY (Uncharacterized protein n=6 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GYH9_9APHY) HSP 1 Score: 95.1 bits (235), Expect = 2.870e-20 Identity = 51/123 (41.46%), Postives = 74/123 (60.16%), Query Frame = 1
Query: 1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRWNRLL 366
K N V WV KT++ G V+K +R+VA+ SQ G D+LE FAP ++ ++ +AV N+WE+ DV A++ L ++YM+ +G D SGRI L+ +YGL+QSGR WNR L
Sbjct: 946 KDRNAVGCKWVFQRKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVRLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFDDGSGRICRLRKTLYGLKQSGREWNRKL 1068
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A401GXA0_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GXA0_9APHY) HSP 1 Score: 91.3 bits (225), Expect = 3.550e-20 Identity = 48/123 (39.02%), Postives = 72/123 (58.54%), Query Frame = 1
Query: 1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRWNRLL 366
K N V WV KT++ G V+K +R+VA+ SQ G D+LE FAP ++ ++ +AV N+WE+ DV A++ L ++YM+ +G D SG + L +YGL+QSG +WNR L
Sbjct: 11 KDRNAVGCKWVFQKKTNKEGQVVKYKARLVAQGYSQIPGMDFLETFAPVVHLESIRAILALAVVNNWEIGQMDVKGAYLNGDLQEEIYMRQPEGFNDGSGHVCRLHKTLYGLKQSGHKWNRKL 133
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A5E4GDR6_PRUDU (PREDICTED: Retrovirus-related Pol poly from transposon (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4GDR6_PRUDU) HSP 1 Score: 93.6 bits (231), Expect = 5.540e-20 Identity = 52/124 (41.94%), Postives = 72/124 (58.06%), Query Frame = 1
Query: 7 TNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGDS---GRIVLLQSAVYGLRQSGRRWNRLLT 369
TNIV W+ K + G + + +R+VA+ SQEYG DY E F+P + V+L++G+AV WELR DV AF+ L DV+MK QG DS + LQ ++YGL+Q+ R WN T
Sbjct: 143 TNIVGCKWIFKIKKNADGTISRYKARLVAQGFSQEYGLDYEETFSPVVRHTTVRLILGLAVNFQWELRQLDVKNAFLHGELQEDVFMKQPQGFVDSQYPNHVCKLQKSLYGLKQAPRAWNAKFT 266
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5LAZ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAZ3_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 1.100e-19 Identity = 44/116 (37.93%), Postives = 72/116 (62.07%), Query Frame = 1
Query: 4 GTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGR 348
G + WV SWKT+E G ++ +RMVAR S+ G D+ + + + +K V+ VA E +L ++DV +A+I L ++Y++F +GCG SG++V ++ A+YGL+QSGR
Sbjct: 41 GRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSEIPGIDFHHSSSASPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKNEIYLRFPEGCGSMSGKVVKVERALYGLKQSGR 156
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 1.750e-19 Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1
Query: 1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRW 354
+G + WV SWKT+E G ++ +RMVAR SQ G D+ + + +K V+ VA E +L ++DV +A+I L ++Y++F +GCG SG++V ++ A+YGL+QSGR W
Sbjct: 253 EGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 371
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 1.760e-19 Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1
Query: 1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRW 354
+G + WV SWKT+E G ++ +RMVAR SQ G D+ + + +K V+ VA E +L ++DV +A+I L ++Y++F +GCG SG++V ++ A+YGL+QSGR W
Sbjct: 498 EGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHRSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 616
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5K1I0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I0_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 1.810e-19 Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1
Query: 1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRW 354
+G + WV SWKT+E G ++ +RMVAR SQ G D+ + + +K V+ VA E +L ++DV +A+I L ++Y++F +GCG SG++V ++ A+YGL+QSGR W
Sbjct: 399 EGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 517
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5JI89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI89_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 1.810e-19 Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1
Query: 1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRW 354
+G + WV SWKT+E G ++ +RMVAR SQ G D+ + + +K V+ VA E +L ++DV +A+I L ++Y++F +GCG SG++V ++ A+YGL+QSGR W
Sbjct: 567 EGRKAIGSKWVFSWKTNEKGLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 685
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5K1G1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G1_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 2.230e-19 Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1
Query: 1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRW 354
+G + WV SWKT+E G ++ +RMVAR+ SQ G D+ + + +K V+ VA E +L ++DV +A+I L + Y++F +GCG SG++V ++ A+YGL+QSGR W
Sbjct: 56 EGRKAIGLKWVFSWKTNEKGLIVDNKARMVARVFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAMLKEETYLRFPEGCGSISGKVVKVERALYGLKQSGREW 174
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Match: A0A6H5JUN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUN0_9PHAE) HSP 1 Score: 91.7 bits (226), Expect = 2.910e-19 Identity = 46/119 (38.66%), Postives = 73/119 (61.34%), Query Frame = 1
Query: 1 KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSLTSGVKLVVGVAVENDWELRYFDVAKAFIQVGLGFDVYMKFLQGCGD-SGRIVLLQSAVYGLRQSGRRW 354
+G + WV SWKT+E G +L +R+VAR SQ G D+ + + +K V+ VA E +L ++DV +A+I L ++Y++F +GCG SG++V ++ A+YGL+QSGR W
Sbjct: 56 EGRKAIGSKWVFSWKTNEKGLILDFKARVVARGFSQIPGIDFHRSSSACPSAASLKTVIAVATEKGKKLAHWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREW 174 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17869.4718.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17869.4718.1 >prot_H-elongata_contig17869.4718.1 ID=prot_H-elongata_contig17869.4718.1|Name=mRNA_H-elongata_contig17869.4718.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=124bp KGTNIVSGWWVRSWKTDEHGNVLKPSSRMVARLCSQEYGADYLEIFAPTSback to top mRNA from alignment at H-elongata_contig17869:368..739- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17869.4718.1 ID=mRNA_H-elongata_contig17869.4718.1|Name=mRNA_H-elongata_contig17869.4718.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=372bp|location=Sequence derived from alignment at H-elongata_contig17869:368..739- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17869:368..739- >mRNA_H-elongata_contig17869.4718.1 ID=mRNA_H-elongata_contig17869.4718.1|Name=mRNA_H-elongata_contig17869.4718.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=744bp|location=Sequence derived from alignment at H-elongata_contig17869:368..739- (Himanthalia elongata Himel1 dioecious)back to top |