prot_H-elongata_contig17857.4714.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17857.4714.1
Unique Nameprot_H-elongata_contig17857.4714.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length160
Homology
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BLAST of mRNA_H-elongata_contig17857.4714.1 vs. uniprot
Match: A0A2Z6NZX7_TRISU (CCHC-type domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NZX7_TRISU)

HSP 1 Score: 55.8 bits (133), Expect = 4.540e-6
Identity = 43/161 (26.71%), Postives = 81/161 (50.31%), Query Frame = 0 
Query:    1 KDAWAALREKIDG---CSREALRAAYVEMESMKMRPGEDPDEFLYKKDHFRDRLNSLLTPKEGPSDRQFEDIILQCLPLEYDQIRQTHFERENCNLADIRM---MSKLYADNLARLNSNATKGIAERGVAI-----QATGRDLSTIQCYHCNKLGHFKSEC 150
            KDAW  L++   G     +  L+A   + E ++M+  E   E+  + ++  +++ +    K   S+ +  + +L+ L  ++D I  T  + ++  L++I+M    S L A  L   +    + + ++  +      Q T +D STIQCY+CNK GH+ SEC
Sbjct:   91 KDAWDILQKSYGGDAKVKKVKLQALKRQFELLEMKSDEAVAEYFTRVENLTNQMKNC---KSTLSEEETVEKVLRTLTHKFDHIVVTIEQTKD--LSEIKMEDLQSTLEAHELKHGSKKGKESVEDKSESSKKEGGQKTKKDKSTIQCYNCNKYGHYSSEC 246
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17857.4714.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2Z6NZX7_TRISU4.540e-626.71CCHC-type domain-containing protein n=1 Tax=Trifol... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.60.10coord: 128..159
e-value: 2.1E-5
score: 26.1
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 136..150
e-value: 3.4E-5
score: 23.7
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 137..150
score: 9.257
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 128..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17857contigH-elongata_contig17857:6561..7040 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17857.4714.1mRNA_H-elongata_contig17857.4714.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17857 6561..7040 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17857.4714.1 ID=prot_H-elongata_contig17857.4714.1|Name=mRNA_H-elongata_contig17857.4714.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=160bp
KDAWAALREKIDGCSREALRAAYVEMESMKMRPGEDPDEFLYKKDHFRDR
LNSLLTPKEGPSDRQFEDIILQCLPLEYDQIRQTHFERENCNLADIRMMS
KLYADNLARLNSNATKGIAERGVAIQATGRDLSTIQCYHCNKLGHFKSEC
ADFKGRGGQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf