mRNA_H-elongata_contig178505.4709.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig178505.4709.1
Unique NamemRNA_H-elongata_contig178505.4709.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig178505.4709.1 vs. uniprot
Match: A0A8J6DAC2_9ROSI (S-acyltransferase n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6DAC2_9ROSI)

HSP 1 Score: 105 bits (261), Expect = 3.050e-26
Identity = 37/55 (67.27%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:   31 KYCETCNIFRPPRSKHCRLCNNCVERFDHHCPWVGSCVAVRNYRFFFMFVSATAV 195
            KYC+TC ++RPPR+ HC +CNNCV+RFDHHCPWVG C+ +RNYRFFFMF+S + +
Sbjct:   65 KYCDTCLLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGIRNYRFFFMFISTSTI 119
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BLAST of mRNA_H-elongata_contig178505.4709.1 vs. uniprot
Match: UPI001FB16758 (probable protein S-acyltransferase 7 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB16758)

HSP 1 Score: 108 bits (271), Expect = 5.770e-26
Identity = 42/61 (68.85%), Postives = 52/61 (85.25%), Query Frame = 1 
Query:   16 GLHGF-KYCETCNIFRPPRSKHCRLCNNCVERFDHHCPWVGSCVAVRNYRFFFMFVSATAV 195
            G+H   KYC+TC ++RPPRS HC +CNNCVERFDHHCPWVG C+ +RNYRF+FMFVS+T +
Sbjct:  145 GVHVMIKYCDTCMLYRPPRSSHCSICNNCVERFDHHCPWVGQCIGLRNYRFYFMFVSSTTI 205
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BLAST of mRNA_H-elongata_contig178505.4709.1 vs. uniprot
Match: A0A2K3LC67_TRIPR (S-acyltransferase (Fragment) n=2 Tax=Trifolium TaxID=3898 RepID=A0A2K3LC67_TRIPR)

HSP 1 Score: 103 bits (257), Expect = 8.810e-26
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   31 KYCETCNIFRPPRSKHCRLCNNCVERFDHHCPWVGSCVAVRNYRFFFMFVSATAV 195
            KYC+TC ++RPPR  HC +CNNCVERFDHHCPWVG C+ +RNYR+FFMFVS+  +
Sbjct:   63 KYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRYFFMFVSSATL 117
[Close]
BLAST of mRNA_H-elongata_contig178505.4709.1 vs. uniprot
Match: A0A0D2V5S9_GOSRA (S-acyltransferase n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2V5S9_GOSRA)

HSP 1 Score: 106 bits (264), Expect = 1.170e-25
Identity = 40/55 (72.73%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   31 KYCETCNIFRPPRSKHCRLCNNCVERFDHHCPWVGSCVAVRNYRFFFMFVSATAV 195
            KYC+TC ++RPPR  HC +CNNCVERFDHHCPWVG C+  RNYRFFFMFVS+T +
Sbjct:  160 KYCQTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGKRNYRFFFMFVSSTTI 214
[Close]
BLAST of mRNA_H-elongata_contig178505.4709.1 vs. uniprot
Match: A0A540KVC6_MALBA (S-acyltransferase n=1 Tax=Malus baccata TaxID=106549 RepID=A0A540KVC6_MALBA)

HSP 1 Score: 106 bits (265), Expect = 1.190e-25
Identity = 41/55 (74.55%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   31 KYCETCNIFRPPRSKHCRLCNNCVERFDHHCPWVGSCVAVRNYRFFFMFVSATAV 195
            KYC+TC ++RPPR  HC +CNNCVERFDHHCPWVG C+  RNYRFFFMFVS+T V
Sbjct:  172 KYCQTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGKRNYRFFFMFVSSTTV 226
[Close]
BLAST of mRNA_H-elongata_contig178505.4709.1 vs. uniprot
Match: A0A453L8N5_AEGTS (S-acyltransferase n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453L8N5_AEGTS)

HSP 1 Score: 103 bits (256), Expect = 1.250e-25
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   31 KYCETCNIFRPPRSKHCRLCNNCVERFDHHCPWVGSCVAVRNYRFFFMFVSATAV 195
            KYC+TC ++RPPR  HC +CNNCVERFDHHCPWVG C+ +RNYRFF+MFV +T +
Sbjct:   42 KYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFYMFVFSTTL 96
[Close]
BLAST of mRNA_H-elongata_contig178505.4709.1 vs. uniprot
Match: A0A2U1N9Q8_ARTAN (S-acyltransferase n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1N9Q8_ARTAN)

HSP 1 Score: 105 bits (261), Expect = 1.480e-25
Identity = 39/55 (70.91%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:   31 KYCETCNIFRPPRSKHCRLCNNCVERFDHHCPWVGSCVAVRNYRFFFMFVSATAV 195
            KYC+TC ++RPPR  HC +CNNCVERFDHHCPWVG C+ +RNYRFFFMFVS++ +
Sbjct:  135 KYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFFMFVSSSTL 189
[Close]
BLAST of mRNA_H-elongata_contig178505.4709.1 vs. uniprot
Match: C4J9H6_MAIZE (S-acyltransferase n=1 Tax=Zea mays TaxID=4577 RepID=C4J9H6_MAIZE)

HSP 1 Score: 101 bits (251), Expect = 1.720e-25
Identity = 41/61 (67.21%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:   16 GLH-GFKYCETCNIFRPPRSKHCRLCNNCVERFDHHCPWVGSCVAVRNYRFFFMFVSATAV 195
            G+H   KYCETC I+RPPR  HC  C+NCVERFDHHCPWVG C+  RNYR+FF FV++ AV
Sbjct:    4 GVHVKMKYCETCMIYRPPRCSHCSKCDNCVERFDHHCPWVGQCIGERNYRYFFCFVASAAV 64
[Close]
BLAST of mRNA_H-elongata_contig178505.4709.1 vs. uniprot
Match: A0A7J9E2U4_9ROSI (S-acyltransferase n=1 Tax=Gossypium trilobum TaxID=34281 RepID=A0A7J9E2U4_9ROSI)

HSP 1 Score: 104 bits (259), Expect = 1.820e-25
Identity = 39/55 (70.91%), Postives = 47/55 (85.45%), Query Frame = 1 
Query:   31 KYCETCNIFRPPRSKHCRLCNNCVERFDHHCPWVGSCVAVRNYRFFFMFVSATAV 195
            KYC+TC ++RPPR  HC +CNNCVERFDHHCPWVG C+ +RNYRFFFMFV +T +
Sbjct:   68 KYCDTCMLYRPPRCSHCSICNNCVERFDHHCPWVGQCIGLRNYRFFFMFVFSTTL 122
[Close]
BLAST of mRNA_H-elongata_contig178505.4709.1 vs. uniprot
Match: A0A0D2QQE3_GOSRA (S-acyltransferase n=1 Tax=Gossypium raimondii TaxID=29730 RepID=A0A0D2QQE3_GOSRA)

HSP 1 Score: 105 bits (261), Expect = 1.880e-25
Identity = 37/55 (67.27%), Postives = 48/55 (87.27%), Query Frame = 1 
Query:   31 KYCETCNIFRPPRSKHCRLCNNCVERFDHHCPWVGSCVAVRNYRFFFMFVSATAV 195
            KYC+TC ++RPPR+ HC +CNNCV+RFDHHCPWVG C+ +RNYRFFFMF+S + +
Sbjct:  147 KYCDTCLLYRPPRASHCSICNNCVQRFDHHCPWVGQCIGIRNYRFFFMFISTSTI 201
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178505.4709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J6DAC2_9ROSI3.050e-2667.27S-acyltransferase n=1 Tax=Gossypium anomalum TaxID... [more]
UPI001FB167585.770e-2668.85probable protein S-acyltransferase 7 n=1 Tax=Impat... [more]
A0A2K3LC67_TRIPR8.810e-2669.09S-acyltransferase (Fragment) n=2 Tax=Trifolium Tax... [more]
A0A0D2V5S9_GOSRA1.170e-2572.73S-acyltransferase n=1 Tax=Gossypium raimondii TaxI... [more]
A0A540KVC6_MALBA1.190e-2574.55S-acyltransferase n=1 Tax=Malus baccata TaxID=1065... [more]
A0A453L8N5_AEGTS1.250e-2569.09S-acyltransferase n=1 Tax=Aegilops tauschii subsp.... [more]
A0A2U1N9Q8_ARTAN1.480e-2570.91S-acyltransferase n=1 Tax=Artemisia annua TaxID=35... [more]
C4J9H6_MAIZE1.720e-2567.21S-acyltransferase n=1 Tax=Zea mays TaxID=4577 RepI... [more]
A0A7J9E2U4_9ROSI1.820e-2570.91S-acyltransferase n=1 Tax=Gossypium trilobum TaxID... [more]
A0A0D2QQE3_GOSRA1.880e-2567.27S-acyltransferase n=1 Tax=Gossypium raimondii TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig178505contigH-elongata_contig178505:337..1070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue4.6e-22
Seed eggNOG ortholog2880.D7FV32
KEGG rclassRC00741,RC01491,RC01492,RC03042
KEGG koko:K04035,ko:K16675,ko:K18932,ko:K20027,ko:K20030,ko:K20471
KEGG ReactionR06265,R06266,R06267,R10068
KEGG Pathwayko00860,ko01100,ko01110,ko04391,map00860,map01100,map01110,map04391
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005798,GO:0005886,GO:0007275,GO:0008150,GO:0009653,GO:0009888,GO:0009987,GO:0010015,GO:0010053,GO:0010054,GO:0012505,GO:0016020,GO:0016049,GO:0021700,GO:0022622,GO:0030133,GO:0030135,GO:0030136,GO:0030140,GO:0030154,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0035618,GO:0040007,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044444,GO:0044464,GO:0048364,GO:0048468,GO:0048469,GO:0048588,GO:0048589,GO:0048731,GO:0048764,GO:0048765,GO:0048767,GO:0048856,GO:0048869,GO:0060560,GO:0071695,GO:0071944,GO:0080147,GO:0090558,GO:0090627,GO:0097708,GO:0099402,GO:0120025,GO:1905392
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1311@2759
EC1.14.13.81,2.3.1.225
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04131
Hectar predicted targeting categorysignal anchor
Exons2
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930030.6958833-CDS-H-elongata_contig178505:336..5351622930030.6958833-CDS-H-elongata_contig178505:336..535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178505 337..535 -
1691679253.613583-CDS-H-elongata_contig178505:336..5351691679253.613583-CDS-H-elongata_contig178505:336..535Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178505 337..535 -
1622930030.7171793-CDS-H-elongata_contig178505:963..10701622930030.7171793-CDS-H-elongata_contig178505:963..1070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178505 964..1070 -
1691679253.627166-CDS-H-elongata_contig178505:963..10701691679253.627166-CDS-H-elongata_contig178505:963..1070Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178505 964..1070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig178505.4709.1prot_H-elongata_contig178505.4709.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig178505 337..1070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig178505.4709.1

>prot_H-elongata_contig178505.4709.1 ID=prot_H-elongata_contig178505.4709.1|Name=mRNA_H-elongata_contig178505.4709.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
VYQAIGLHGFKYCETCNIFRPPRSKHCRLCNNCVERFDHHCPWVGSCVAV
RNYRFFFMFVSATAVLIVYMLVVMCCRVIILVVVKGDGSVPRLLEIVASG
W*
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mRNA from alignment at H-elongata_contig178505:337..1070-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig178505.4709.1 ID=mRNA_H-elongata_contig178505.4709.1|Name=mRNA_H-elongata_contig178505.4709.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=734bp|location=Sequence derived from alignment at H-elongata_contig178505:337..1070- (Himanthalia elongata Himel1 dioecious)
GTATATCAGGCAATCGGGCTGCATGGGTTCAAGTACTGTGAGACGTGCAA
TATTTTTCGGCCGCCGCGGTCGAAGCATTGTCGCTTGTGCAACAACTGCG
TCGAAAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAATT
AAATTACACATAACCATGTAATCCAACCCTGTCATGCTATTTAGTCATGC
TATTTAGTCATGCTATTTAGTCATGCCAAGTACGATGTGTATGTTTGTGC
GCTGTCTACCTCGGTGCCTGTATGCACAGCGGTGTATGAAATCGAATTTC
GGTGATGTCTGTGCTTGGTACCGTGCAGCGGTGGTCTGCCGGTGTATGGA
TGCCGAAACGACGCTTAAAACTCAGCGCGCACGAAACCCCACACCGGCCA
CGCGACATCCCTGGTTAGGGCGCTAAAGTCTGATCTATTTATCTATCTAT
ATATATATATATTCTCTCTATGTATCTCCGCAAAGGTTCGATCACCACTG
TCCATGGGTCGGCAGCTGCGTGGCGGTCCGAAATTACCGTTTCTTTTTTA
TGTTCGTGAGCGCGACGGCGGTGCTGATCGTGTACATGTTGGTGGTGATG
TGCTGCCGAGTTATAATCTTGGTGGTGGTAAAGGGTGACGGCTCGGTCCC
GCGGCTCCTAGAAATCGTGGCATCAGGTTGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig178505:337..1070-

>mRNA_H-elongata_contig178505.4709.1 ID=mRNA_H-elongata_contig178505.4709.1|Name=mRNA_H-elongata_contig178505.4709.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig178505:337..1070- (Himanthalia elongata Himel1 dioecious)
GTATATCAGGCAATCGGGCTGCATGGGTTCAAGTACTGTGAGACGTGCAA
TATTTTTCGGCCGCCGCGGTCGAAGCATTGTCGCTTGTGCAACAACTGCG
TCGAAAGGTATATCAGGCAATCGGGCTGCATGGGTTCAAGTACTGTGAGA
CGTGCAATATTTTTCGGCCGCCGCGGTCGAAGCATTGTCGCTTGTGCAAC
AACTGCGTCGAAAGGTTCGATCACCACTGTCCATGGGTCGGCAGCTGCGT
GGCGGTCCGAAATTACCGTTTCTTTTTTATGTTCGTGAGCGCGACGGCGG
TGCTGATCGTGTACATGTTGGTGGTGATGTGCTGCCGAGTTATAATCTTG
GTGGTGGTAAAGGGTGACGGCTCGGTCCCGCGGCTCCTAGAAATCGTGGC
ATCAGGTTGGTGAGTTCGATCACCACTGTCCATGGGTCGGCAGCTGCGTG
GCGGTCCGAAATTACCGTTTCTTTTTTATGTTCGTGAGCGCGACGGCGGT
GCTGATCGTGTACATGTTGGTGGTGATGTGCTGCCGAGTTATAATCTTGG
TGGTGGTAAAGGGTGACGGCTCGGTCCCGCGGCTCCTAGAAATCGTGGCA
TCAGGTTGGTGA
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