mRNA_H-elongata_contig1785.4707.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1785.4707.1
Unique NamemRNA_H-elongata_contig1785.4707.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1785.4707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1785contigH-elongata_contig1785:14187..15341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size457
Cds size246
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1785.4707.1prot_H-elongata_contig1785.4707.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1785 14246..15189 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930030.496844-UTR-H-elongata_contig1785:14186..142451622930030.496844-UTR-H-elongata_contig1785:14186..14245Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1785 14187..14245 -
1691679253.4704127-UTR-H-elongata_contig1785:14186..142451691679253.4704127-UTR-H-elongata_contig1785:14186..14245Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1785 14187..14245 -
1622930030.5418322-UTR-H-elongata_contig1785:15189..153411622930030.5418322-UTR-H-elongata_contig1785:15189..15341Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1785 15190..15341 -
1691679253.52109-UTR-H-elongata_contig1785:15189..153411691679253.52109-UTR-H-elongata_contig1785:15189..15341Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig1785 15190..15341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930030.5093215-CDS-H-elongata_contig1785:14245..143261622930030.5093215-CDS-H-elongata_contig1785:14245..14326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1785 14246..14326 -
1691679253.488321-CDS-H-elongata_contig1785:14245..143261691679253.488321-CDS-H-elongata_contig1785:14245..14326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1785 14246..14326 -
1622930030.5237277-CDS-H-elongata_contig1785:15024..151891622930030.5237277-CDS-H-elongata_contig1785:15024..15189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1785 15025..15189 -
1691679253.5083423-CDS-H-elongata_contig1785:15024..151891691679253.5083423-CDS-H-elongata_contig1785:15024..15189Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1785 15025..15189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1785.4707.1

>prot_H-elongata_contig1785.4707.1 ID=prot_H-elongata_contig1785.4707.1|Name=mRNA_H-elongata_contig1785.4707.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
MKSGLTRWRLTVEMDAVAENVRISGVSTIFSLGWENEQTEAGRDCSSCFA
RPNSQVVASSSWGGRRLTDNGPSPTQQHTTT*
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mRNA from alignment at H-elongata_contig1785:14187..15341-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1785.4707.1 ID=mRNA_H-elongata_contig1785.4707.1|Name=mRNA_H-elongata_contig1785.4707.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1155bp|location=Sequence derived from alignment at H-elongata_contig1785:14187..15341- (Himanthalia elongata Himel1 dioecious)
GGGAGTGGGAAAACAGAGGCGTACAATAATTGGTCCATGAGGCTATCTGA
ATAGGCTTCACCCGTTGTTAATCGAGCTACCTTGAGGACTATTGGCTCAA
TGCCGGCGAACTCGCAGTGGTAAACGCCATCGGTACGCAATTGCGTGGCC
TGATGAAATCGGGATTGACCCGATGGCGACTGACGGTAGAAATGGACGCC
GTCGCGGAAAACGTGAGGATCTCGGGAGTAAGCACCATATTCAGCTTGGG
TTGGGAGAATGAGCAGACTGAAGCGGGACGTGACTGCTCAAGCTGTTTCG
CGAGACCAAATTCTCAGGCGCGAACGGGGACAGGGGAAAAATATTTTCTC
TGTGAGCTGACCATGAGCAGAAGCAACCAATTCCGGTTGATCTGCTAAAT
GTTTGACCAACAACAACTCTTTACTTGACATTATTTTTTATATTTTCGAA
GAACATTTTACTACACAAGCCTTGGTTGTTTTTCATTGGTAGATATTTTT
ATTTTTACTGCAAAGCCTCGGGTATGCATCGATATCTCAGCCACTGACAT
CGACGCTCCACGTAGCCCGAGAGAAGAGGCTACGACTATTCATATCAATA
GTAGAGGAAGCGATGTGGTGGCAAGGATGTGTGTCCTCCCAAAAGCCTAT
TTTATCATGCGGTTGAGAATAAACGAGCCCCCTCATAGTGCTGCTGTTGT
TCTACGCTGGATGTTATACTACTACACTATCAGTCTGATATTTGTTGTGT
TGTGGTTGTAGCTATCGCCTGATCGCTTGGTCCCCTGAGAAGTAAATTAG
CATCGATGTGCACTCTTCCTCTGCCTGTCTGCTACTGGGTACATCAGCCA
ACGTTATTGGGGGTGATCTCCGTCGGGACCTCGTTGTAGCTGTTAGGATA
TGTTACCCCAGAGGTGTCTAAGGCATAAAGCCCTGCCGTTTTTCGCACAG
CAGCCAGGGTGTCTACATCTCACTAAGCTCGTATGATCTGCGAAATCTGC
GTGTTGTTCTCTCAGGTGGTAGCTTCGTCTTCTTGGGGGGGAAGACGACT
CACGGACAACGGACCTTCACCTACACAACAACACACAACAACATAGACGA
CGTCATTACTTTGTCGGAAAACGGCTCTCTGTTGATTTGCCAAGAGGCTG
AAAAG
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Coding sequence (CDS) from alignment at H-elongata_contig1785:14187..15341-

>mRNA_H-elongata_contig1785.4707.1 ID=mRNA_H-elongata_contig1785.4707.1|Name=mRNA_H-elongata_contig1785.4707.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig1785:14187..15341- (Himanthalia elongata Himel1 dioecious)
ATGAAATCGGGATTGACCCGATGGCGACTGACGGTAGAAATGGACGCCGT
CGCGGAAAACGTGAGGATCTCGGGAGTAAGCACCATATTCAGCTTGGGTT
GGGAGAATGAGCAGACTGAAGCGGGACGTGACTGCTCAAGCTGTTTCGCG
AGACCAAATTCTCAGATGAAATCGGGATTGACCCGATGGCGACTGACGGT
AGAAATGGACGCCGTCGCGGAAAACGTGAGGATCTCGGGAGTAAGCACCA
TATTCAGCTTGGGTTGGGAGAATGAGCAGACTGAAGCGGGACGTGACTGC
TCAAGCTGTTTCGCGAGACCAAATTCTCAGGTGGTAGCTTCGTCTTCTTG
GGGGGGAAGACGACTCACGGACAACGGACCTTCACCTACACAACAACACA
CAACAACATAGGTGGTAGCTTCGTCTTCTTGGGGGGGAAGACGACTCACG
GACAACGGACCTTCACCTACACAACAACACACAACAACATAG
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