prot_H-elongata_contig17848.4706.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17848.4706.1
Unique Nameprot_H-elongata_contig17848.4706.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length167
Homology
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: D7FZL6_ECTSI (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL6_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 4.740e-75
Identity = 126/162 (77.78%), Postives = 138/162 (85.19%), Query Frame = 0
Query:    1 YERTTELRHLCDTLRQHISNLQKHSAAHVGTLLGHSNDPRLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIGKNTPKARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLLAAVSIPEIRYSS 162
            YERTTELR LCDTLRQHISNLQKHSAA            RLRGWE W +D IELHLQTRFAQLEVAAGL+LWTEGFRTV DIYNIMQIGK TPKARLMASYY++LTRI WVSE+YLFHAYAWYKF++LG+EYNK LT EAK +QA+CVLLAA+SIP+IR  S
Sbjct:  195 YERTTELRRLCDTLRQHISNLQKHSAAQTTN--------RLRGWEGWTSDGIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQIGKKTPKARLMASYYEKLTRIFWVSENYLFHAYAWYKFFSLGSEYNKTLTSEAKVTQANCVLLAAISIPQIRSES 348          
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: A0A836CG33_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG33_9STRA)

HSP 1 Score: 228 bits (582), Expect = 1.340e-66
Identity = 114/159 (71.70%), Postives = 129/159 (81.13%), Query Frame = 0
Query:    1 YERTTELRHLCDTLRQHISNLQKHSAAHVGTLLGHSNDPRLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIGKNTPKARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLLAAVSIPEIR 159
            Y RTTE R LCDTLRQHISNLQ+H+ A   T        RLRGWE W ++ IELHLQTRFAQLEVAA L+LWTEGFRTV DIYNIMQIGK  PKARLMASYY++LTRI  VSE++LFHAYAWYK+YTL  EYNKALT E +T QA CVLLAA++IPE++
Sbjct:  193 YARTTEFRRLCDTLRQHISNLQRHTGAAAAT--------RLRGWEGWTSEGIELHLQTRFAQLEVAANLELWTEGFRTVEDIYNIMQIGKKVPKARLMASYYEKLTRIFLVSENHLFHAYAWYKYYTLSREYNKALTAEERTQQACCVLLAALAIPEVK 343          
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: A0A6H5KVX7_9PHAE (PCI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX7_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 3.640e-61
Identity = 101/131 (77.10%), Postives = 114/131 (87.02%), Query Frame = 0
Query:   32 LLGHSNDPRLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIGKNTPKARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLLAAVSIPEIRYSS 162
            LL      RLRGWE W +D IELHLQTRFAQLEVAAGL+LWTEGFRTV DIYNIMQIGK TPKARLMASYY++LTRI WVSE++LFHAYAWYKF++LG+EYNK LT EAK +QA+CVLLAA+SIP+IR  S
Sbjct:    8 LLATQTTNRLRGWEGWTSDGIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQIGKKTPKARLMASYYEKLTRIFWVSENFLFHAYAWYKFFSLGSEYNKTLTSEAKVTQANCVLLAAISIPQIRSES 138          
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: A0A6V1NAU3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAU3_HETAK)

HSP 1 Score: 185 bits (470), Expect = 1.170e-54
Identity = 90/155 (58.06%), Postives = 115/155 (74.19%), Query Frame = 0
Query:    3 RTTELRHLCDTLRQHISNLQKHSAAHVGTLLGHSNDPRLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIGKNTPKARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLLAAVSIPE 157
            R  E R LC+T+RQH+ +LQKH A H           RLRGW+ +  +++ELHLQTRFAQL+ A  L++WTE FRT+ DIY+IMQI K  PKARLMA+Y+++LTRI WVS++ LFHAYAW K+Y LG EYNK LT E K +QA  VLLAA+++PE
Sbjct:  196 RMLEFRRLCETMRQHVGHLQKHVAQHTAQ--------RLRGWDGFTPESVELHLQTRFAQLKAATALEVWTEAFRTIEDIYSIMQINKKAPKARLMAAYFEQLTRIFWVSQNRLFHAYAWLKYYQLGREYNKVLTEEEKRAQAGKVLLAALAVPE 342          
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: A0A7S2R6Z3_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6Z3_9STRA)

HSP 1 Score: 187 bits (476), Expect = 4.350e-52
Identity = 91/156 (58.33%), Postives = 116/156 (74.36%), Query Frame = 0
Query:    1 YERTTELRHLCDTLRQHISNLQKHSAAHVGTLLGHSNDPRLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIGKNTPKARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLLAAVSIP 156
            Y+R  E R LCD LR H+SNLQK+++         +ND RL+ W+ W +++IELHLQTRF QLE  A L+LWTEGF+TV DI+ IMQI K  PKAR+MA YY++L RI WVSE+YLFHAYAW+K++TL   +NK +T E +T  A CVLLAA+SIP
Sbjct:  193 YKRRLEFRRLCDLLRLHLSNLQKYASGPNA-----ANDKRLKVWDGWTDESIELHLQTRFRQLETTAKLELWTEGFKTVEDIHGIMQINKKAPKARVMAMYYEKLQRIFWVSENYLFHAYAWFKYFTLSESHNKGMTNEERTELASCVLLAAMSIP 343          
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: A0A7S3PZF8_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZF8_9STRA)

HSP 1 Score: 181 bits (458), Expect = 1.280e-49
Identity = 90/169 (53.25%), Postives = 117/169 (69.23%), Query Frame = 0
Query:    1 YERTTELRHLCDTLRQHISNLQKHSAAHVGTLLGHSNDP--RLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQI---------GKNTPKARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLLAAVSIPEI 158
            Y+R  E + LCD LR H+ NLQK+ +      +     P  R+RGWE W +++IELHLQTRF QLE A+ L L+TEGFRTV DI+NI+QI         G   PKA++MA+YY++LT + WVSE+YLFHA+AWYKFYTL  EYN+ +T E KT QA  VLL+A+ IP +
Sbjct:  196 YKRNVEFKRLCDLLRMHLQNLQKYGSFAAMAKIEEGGKPNNRVRGWEGWTSESIELHLQTRFTQLETASTLHLYTEGFRTVEDIFNILQISNSRRKVAGGSAAPKAKIMAAYYEKLTTLFWVSENYLFHAFAWYKFYTLCREYNRGMTVEQKTQQASAVLLSALCIPSL 364          
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: A0A7S2WH75_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WH75_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.630e-49
Identity = 90/173 (52.02%), Postives = 119/173 (68.79%), Query Frame = 0
Query:    1 YERTTELRHLCDTLRQHISNLQKHSAAHVGTLLGHSNDPRLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIGKNT-------PKARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLLAAVSIPEIRYSSDSDS 166
            Y+R TE R LCD LR H+ NLQK+             + ++RGWE W  D++ELHLQTRFAQLE A+ L L+TEGFRTV DIYNI++I ++        P+A+LMA+YY++LT + WVSE+YLFHA+AWYK+YTL  EYN+++T E    QA  VLL+A+ IP    +S S S
Sbjct:  219 YKRRTEFRRLCDMLRMHLGNLQKYGGTAFNASADGKLNNKIRGWEGWTMDSLELHLQTRFAQLETASTLSLYTEGFRTVEDIYNILEISQSNAKRLGGMPRAKLMATYYEKLTTLFWVSENYLFHAFAWYKYYTLCKEYNRSMTEEKMQMQASAVLLSALCIPPNHAASASQS 391          
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: F0XXZ4_AURAN (PCI domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXZ4_AURAN)

HSP 1 Score: 176 bits (445), Expect = 9.510e-49
Identity = 89/158 (56.33%), Postives = 116/158 (73.42%), Query Frame = 0
Query:    1 YERTTELRHLCDTLRQHISNLQKHSAAHVGTLLGHSNDPRLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIGKNTPKARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKA-LTPEAKTSQADCVLLAAVSIPE 157
            +ER TELR LC+TLRQH+SNLQ+ +A         +N  RLRGWE W  + +E+HL TRFAQLEVA+ L+LWTEGFRTV DI+ IM+I K  PKA+LMA YY+RLT+I WVS ++LFHA+AW++   L  E  K   TPE ++ +A  VLLAA++IP+
Sbjct:  188 FERKTELRRLCETLRQHLSNLQRAAAT--------NNTSRLRGWEGWTQEGVEMHLTTRFAQLEVASALELWTEGFRTVEDIHQIMRISKKPPKAKLMAKYYERLTKIFWVSGNHLFHAFAWWRHAQLAKEAEKRPATPEERSHRACAVLLAALAIPD 337          
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: A0A448Z9Q6_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9Q6_9STRA)

HSP 1 Score: 178 bits (451), Expect = 9.890e-49
Identity = 94/172 (54.65%), Postives = 116/172 (67.44%), Query Frame = 0
Query:    1 YERTTELRHLCDTLRQHISNLQKHSAAHVGTLLGHSNDPRLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIG----KNTP-----KARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLLAAVSIPEIRYSSD 163
            Y+R TE R LCD LR H+ NLQK+             + ++RGWE W +D+IELHLQTRFAQLE A+ L L+TEGFRTV DIYNI+QI     KN P     KA+LMA YY++L  + WVSE+YLFHA+AWYK+Y L  EYNK ++ E K  QA  VLLAA+ IP +   SD
Sbjct:  204 YQRRTEFRRLCDLLRMHLGNLQKYGDDSASAKP----NSKVRGWEGWTSDSIELHLQTRFAQLESASYLKLYTEGFRTVEDIYNILQISHHRRKNNPDFAPPKAKLMAKYYEQLIELFWVSENYLFHAFAWYKYYVLCKEYNKGMSEEVKAQQASAVLLAALCIPSLPSKSD 371          
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: A0A7S4R7B1_9STRA (Eukaryotic translation initiation factor 3 subunit A n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R7B1_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.120e-48
Identity = 91/169 (53.85%), Postives = 118/169 (69.82%), Query Frame = 0
Query:    1 YERTTELRHLCDTLRQHISNLQKHSAAHV-GTLLGHSNDPRLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIGKNT----------PKARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLLAAVSIPEI 158
            Y R TE R LCD LR H+ NLQK+ +  V G   G   + ++RGWE W  ++IELHLQTRFAQLE A+ L L+TEGFRTV DIYNI+QI  +           PKA+LMA+YY++LT + WVSE+YLFHA+AWYK+YTL  E+N+ ++ E +  QA  VLLAA+ IP +
Sbjct:  200 YRRRTEFRRLCDMLRMHLGNLQKYGSGVVPGVEEGGKPNNKVRGWEGWTTESIELHLQTRFAQLETASVLHLYTEGFRTVEDIYNILQISHSRRKIPGVAAPPPKAKLMAAYYEKLTTLFWVSENYLFHAFAWYKYYTLCKEFNRGMSVEMRQMQASAVLLAALCIPTV 368          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZL6_ECTSI4.740e-7577.78Eukaryotic translation initiation factor 3 subunit... [more]
A0A836CG33_9STRA1.340e-6671.70Eukaryotic translation initiation factor 3 subunit... [more]
A0A6H5KVX7_9PHAE3.640e-6177.10PCI domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6V1NAU3_HETAK1.170e-5458.06Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2R6Z3_9STRA4.350e-5258.33Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S3PZF8_9STRA1.280e-4953.25Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S2WH75_9STRA1.630e-4952.02Eukaryotic translation initiation factor 3 subunit... [more]
F0XXZ4_AURAN9.510e-4956.33PCI domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A448Z9Q6_9STRA9.890e-4954.65Eukaryotic translation initiation factor 3 subunit... [more]
A0A7S4R7B1_9STRA1.120e-4853.85Eukaryotic translation initiation factor 3 subunit... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D4.10.860.10coord: 47..92
e-value: 4.0E-16
score: 60.2
NoneNo IPR availableGENE3D1.25.40.860coord: 93..165
e-value: 1.2E-17
score: 66.3
NoneNo IPR availablePANTHERPTHR14005:SF0EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT Acoord: 1..163
IPR027512Eukaryotic translation initiation factor 3 subunit APANTHERPTHR14005EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNITcoord: 1..163

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17848contigH-elongata_contig17848:5060..6932 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17848.4706.1mRNA_H-elongata_contig17848.4706.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17848 5060..6932 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17848.4706.1 ID=prot_H-elongata_contig17848.4706.1|Name=mRNA_H-elongata_contig17848.4706.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp
YERTTELRHLCDTLRQHISNLQKHSAAHVGTLLGHSNDPRLRGWERWNND
NIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIGKNTPKARLMAS
YYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLL
AAVSIPEIRYSSDSDS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027512EIF3A