mRNA_H-elongata_contig17848.4706.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: D7FZL6_ECTSI (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZL6_ECTSI) HSP 1 Score: 252 bits (644), Expect = 4.740e-75 Identity = 126/162 (77.78%), Postives = 138/162 (85.19%), Query Frame = 1
Query: 1 YERTTELRHLCDTLRQHISNLQKHSAAHVGTLLGHSNDPRLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIGKNTPKARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLLAAVSIPEIRYSS 486
YERTTELR LCDTLRQHISNLQKHSAA RLRGWE W +D IELHLQTRFAQLEVAAGL+LWTEGFRTV DIYNIMQIGK TPKARLMASYY++LTRI WVSE+YLFHAYAWYKF++LG+EYNK LT EAK +QA+CVLLAA+SIP+IR S
Sbjct: 195 YERTTELRRLCDTLRQHISNLQKHSAAQTTN--------RLRGWEGWTSDGIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQIGKKTPKARLMASYYEKLTRIFWVSENYLFHAYAWYKFFSLGSEYNKTLTSEAKVTQANCVLLAAISIPQIRSES 348
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: A0A836CG33_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG33_9STRA) HSP 1 Score: 228 bits (582), Expect = 1.340e-66 Identity = 114/159 (71.70%), Postives = 129/159 (81.13%), Query Frame = 1
Query: 1 YERTTELRHLCDTLRQHISNLQKHSAAHVGTLLGHSNDPRLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIGKNTPKARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLLAAVSIPEIR 477
Y RTTE R LCDTLRQHISNLQ+H+ A T RLRGWE W ++ IELHLQTRFAQLEVAA L+LWTEGFRTV DIYNIMQIGK PKARLMASYY++LTRI VSE++LFHAYAWYK+YTL EYNKALT E +T QA CVLLAA++IPE++
Sbjct: 193 YARTTEFRRLCDTLRQHISNLQRHTGAAAAT--------RLRGWEGWTSEGIELHLQTRFAQLEVAANLELWTEGFRTVEDIYNIMQIGKKVPKARLMASYYEKLTRIFLVSENHLFHAYAWYKYYTLSREYNKALTAEERTQQACCVLLAALAIPEVK 343
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: A0A6H5KVX7_9PHAE (PCI domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX7_9PHAE) HSP 1 Score: 209 bits (533), Expect = 3.640e-61 Identity = 101/131 (77.10%), Postives = 114/131 (87.02%), Query Frame = 1
Query: 94 LLGHSNDPRLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIGKNTPKARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLLAAVSIPEIRYSS 486
LL RLRGWE W +D IELHLQTRFAQLEVAAGL+LWTEGFRTV DIYNIMQIGK TPKARLMASYY++LTRI WVSE++LFHAYAWYKF++LG+EYNK LT EAK +QA+CVLLAA+SIP+IR S
Sbjct: 8 LLATQTTNRLRGWEGWTSDGIELHLQTRFAQLEVAAGLELWTEGFRTVEDIYNIMQIGKKTPKARLMASYYEKLTRIFWVSENFLFHAYAWYKFFSLGSEYNKTLTSEAKVTQANCVLLAAISIPQIRSES 138
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: A0A6V1NAU3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAU3_HETAK) HSP 1 Score: 185 bits (470), Expect = 1.170e-54 Identity = 90/155 (58.06%), Postives = 115/155 (74.19%), Query Frame = 1
Query: 7 RTTELRHLCDTLRQHISNLQKHSAAHVGTLLGHSNDPRLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIGKNTPKARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLLAAVSIPE 471
R E R LC+T+RQH+ +LQKH A H RLRGW+ + +++ELHLQTRFAQL+ A L++WTE FRT+ DIY+IMQI K PKARLMA+Y+++LTRI WVS++ LFHAYAW K+Y LG EYNK LT E K +QA VLLAA+++PE
Sbjct: 196 RMLEFRRLCETMRQHVGHLQKHVAQHTAQ--------RLRGWDGFTPESVELHLQTRFAQLKAATALEVWTEAFRTIEDIYSIMQINKKAPKARLMAAYFEQLTRIFWVSQNRLFHAYAWLKYYQLGREYNKVLTEEEKRAQAGKVLLAALAVPE 342
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: A0A7S2R6Z3_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R6Z3_9STRA) HSP 1 Score: 187 bits (476), Expect = 4.350e-52 Identity = 91/156 (58.33%), Postives = 116/156 (74.36%), Query Frame = 1
Query: 1 YERTTELRHLCDTLRQHISNLQKHSAAHVGTLLGHSNDPRLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIGKNTPKARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLLAAVSIP 468
Y+R E R LCD LR H+SNLQK+++ +ND RL+ W+ W +++IELHLQTRF QLE A L+LWTEGF+TV DI+ IMQI K PKAR+MA YY++L RI WVSE+YLFHAYAW+K++TL +NK +T E +T A CVLLAA+SIP
Sbjct: 193 YKRRLEFRRLCDLLRLHLSNLQKYASGPNA-----ANDKRLKVWDGWTDESIELHLQTRFRQLETTAKLELWTEGFKTVEDIHGIMQINKKAPKARVMAMYYEKLQRIFWVSENYLFHAYAWFKYFTLSESHNKGMTNEERTELASCVLLAAMSIP 343
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: A0A7S3PZF8_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PZF8_9STRA) HSP 1 Score: 181 bits (458), Expect = 1.280e-49 Identity = 90/169 (53.25%), Postives = 117/169 (69.23%), Query Frame = 1
Query: 1 YERTTELRHLCDTLRQHISNLQKHSAAHVGTLLGHSNDP--RLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQI---------GKNTPKARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLLAAVSIPEI 474
Y+R E + LCD LR H+ NLQK+ + + P R+RGWE W +++IELHLQTRF QLE A+ L L+TEGFRTV DI+NI+QI G PKA++MA+YY++LT + WVSE+YLFHA+AWYKFYTL EYN+ +T E KT QA VLL+A+ IP +
Sbjct: 196 YKRNVEFKRLCDLLRMHLQNLQKYGSFAAMAKIEEGGKPNNRVRGWEGWTSESIELHLQTRFTQLETASTLHLYTEGFRTVEDIFNILQISNSRRKVAGGSAAPKAKIMAAYYEKLTTLFWVSENYLFHAFAWYKFYTLCREYNRGMTVEQKTQQASAVLLSALCIPSL 364
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: A0A7S2WH75_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WH75_9STRA) HSP 1 Score: 180 bits (457), Expect = 1.630e-49 Identity = 90/173 (52.02%), Postives = 119/173 (68.79%), Query Frame = 1
Query: 1 YERTTELRHLCDTLRQHISNLQKHSAAHVGTLLGHSNDPRLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIGKNT-------PKARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLLAAVSIPEIRYSSDSDS 498
Y+R TE R LCD LR H+ NLQK+ + ++RGWE W D++ELHLQTRFAQLE A+ L L+TEGFRTV DIYNI++I ++ P+A+LMA+YY++LT + WVSE+YLFHA+AWYK+YTL EYN+++T E QA VLL+A+ IP +S S S
Sbjct: 219 YKRRTEFRRLCDMLRMHLGNLQKYGGTAFNASADGKLNNKIRGWEGWTMDSLELHLQTRFAQLETASTLSLYTEGFRTVEDIYNILEISQSNAKRLGGMPRAKLMATYYEKLTTLFWVSENYLFHAFAWYKYYTLCKEYNRSMTEEKMQMQASAVLLSALCIPPNHAASASQS 391
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: F0XXZ4_AURAN (PCI domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXZ4_AURAN) HSP 1 Score: 176 bits (445), Expect = 9.510e-49 Identity = 89/158 (56.33%), Postives = 116/158 (73.42%), Query Frame = 1
Query: 1 YERTTELRHLCDTLRQHISNLQKHSAAHVGTLLGHSNDPRLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIGKNTPKARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKA-LTPEAKTSQADCVLLAAVSIPE 471
+ER TELR LC+TLRQH+SNLQ+ +A +N RLRGWE W + +E+HL TRFAQLEVA+ L+LWTEGFRTV DI+ IM+I K PKA+LMA YY+RLT+I WVS ++LFHA+AW++ L E K TPE ++ +A VLLAA++IP+
Sbjct: 188 FERKTELRRLCETLRQHLSNLQRAAAT--------NNTSRLRGWEGWTQEGVEMHLTTRFAQLEVASALELWTEGFRTVEDIHQIMRISKKPPKAKLMAKYYERLTKIFWVSGNHLFHAFAWWRHAQLAKEAEKRPATPEERSHRACAVLLAALAIPD 337
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: A0A448Z9Q6_9STRA (Eukaryotic translation initiation factor 3 subunit A n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z9Q6_9STRA) HSP 1 Score: 178 bits (451), Expect = 9.890e-49 Identity = 94/172 (54.65%), Postives = 116/172 (67.44%), Query Frame = 1
Query: 1 YERTTELRHLCDTLRQHISNLQKHSAAHVGTLLGHSNDPRLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIG----KNTP-----KARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLLAAVSIPEIRYSSD 489
Y+R TE R LCD LR H+ NLQK+ + ++RGWE W +D+IELHLQTRFAQLE A+ L L+TEGFRTV DIYNI+QI KN P KA+LMA YY++L + WVSE+YLFHA+AWYK+Y L EYNK ++ E K QA VLLAA+ IP + SD
Sbjct: 204 YQRRTEFRRLCDLLRMHLGNLQKYGDDSASAKP----NSKVRGWEGWTSDSIELHLQTRFAQLESASYLKLYTEGFRTVEDIYNILQISHHRRKNNPDFAPPKAKLMAKYYEQLIELFWVSENYLFHAFAWYKYYVLCKEYNKGMSEEVKAQQASAVLLAALCIPSLPSKSD 371
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Match: A0A7S4R7B1_9STRA (Eukaryotic translation initiation factor 3 subunit A n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4R7B1_9STRA) HSP 1 Score: 178 bits (451), Expect = 1.120e-48 Identity = 91/169 (53.85%), Postives = 118/169 (69.82%), Query Frame = 1
Query: 1 YERTTELRHLCDTLRQHISNLQKHSAAHV-GTLLGHSNDPRLRGWERWNNDNIELHLQTRFAQLEVAAGLDLWTEGFRTVGDIYNIMQIGKNT----------PKARLMASYYDRLTRISWVSESYLFHAYAWYKFYTLGTEYNKALTPEAKTSQADCVLLAAVSIPEI 474
Y R TE R LCD LR H+ NLQK+ + V G G + ++RGWE W ++IELHLQTRFAQLE A+ L L+TEGFRTV DIYNI+QI + PKA+LMA+YY++LT + WVSE+YLFHA+AWYK+YTL E+N+ ++ E + QA VLLAA+ IP +
Sbjct: 200 YRRRTEFRRLCDMLRMHLGNLQKYGSGVVPGVEEGGKPNNKVRGWEGWTTESIELHLQTRFAQLETASVLHLYTEGFRTVEDIYNILQISHSRRKIPGVAAPPPKAKLMAAYYEKLTTLFWVSENYLFHAFAWYKYYTLCKEFNRGMSVEMRQMQASAVLLAALCIPTV 368 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17848.4706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig17848.4706.1 >prot_H-elongata_contig17848.4706.1 ID=prot_H-elongata_contig17848.4706.1|Name=mRNA_H-elongata_contig17848.4706.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=167bp YERTTELRHLCDTLRQHISNLQKHSAAHVGTLLGHSNDPRLRGWERWNNDback to top mRNA from alignment at H-elongata_contig17848:5060..6932- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig17848.4706.1 ID=mRNA_H-elongata_contig17848.4706.1|Name=mRNA_H-elongata_contig17848.4706.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1873bp|location=Sequence derived from alignment at H-elongata_contig17848:5060..6932- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig17848:5060..6932- >mRNA_H-elongata_contig17848.4706.1 ID=mRNA_H-elongata_contig17848.4706.1|Name=mRNA_H-elongata_contig17848.4706.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1002bp|location=Sequence derived from alignment at H-elongata_contig17848:5060..6932- (Himanthalia elongata Himel1 dioecious)back to top |