prot_H-elongata_contig178272.4700.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig178272.4700.1
Unique Name	prot_H-elongata_contig178272.4700.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	125

Homology

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BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: A0A7S6UA05_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA05_9STRA)

HSP 1 Score: 237 bits (605), Expect = 4.620e-79
Identity = 123/124 (99.19%), Postives = 123/124 (99.19%), Query Frame = 0

Query:    1 MDNFVVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRFN 124
            MDNFVVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVL GIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRFN
Sbjct:    1 MDNFVVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLQGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRFN 124

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BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: A0A8E6D2H5_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D2H5_9PHAE)

HSP 1 Score: 177 bits (450), Expect = 2.240e-55
Identity = 87/124 (70.16%), Postives = 105/124 (84.68%), Query Frame = 0

Query:    1 MDNFVVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRFN 124
            M+N +++FN   + QS+E  + K+ LP L  GDTVKIGVLIKEG KERIQYYQG++IA+ N GINKTI+VRR++ GIGVER FL+HSPK+ SIEIK+SSRVR+SKLYYLR LSGKASRLKQRFN
Sbjct:    5 MNNLIISFNSTKVFQSLEKPFIKTSLPILSPGDTVKIGVLIKEGNKERIQYYQGVVIAQNNRGINKTILVRRIIQGIGVERTFLLHSPKVESIEIKKSSRVRRSKLYYLRALSGKASRLKQRFN 128

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BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: A0A0K2RWP5_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Triparma laevis TaxID=1534972 RepID=A0A0K2RWP5_9STRA)

HSP 1 Score: 156 bits (395), Expect = 4.130e-47
Identity = 77/119 (64.71%), Postives = 99/119 (83.19%), Query Frame = 0

Query:    5 VVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRF 123
            ++  NK   +  +++++ KSDLPTL +GD VKIGV I EGTKERIQ+Y+G IIAK+N+ +N TI VR++L GIGVER+FLIHSPK+NSI++ RSS+VR+SKLYYLR L GKASRLKQRF
Sbjct:    1 MIIANKQKYLDDLQNQFLKSDLPTLEVGDGVKIGVKIIEGTKERIQFYEGTIIAKKNSSVNTTITVRKILQGIGVERVFLIHSPKVNSIQVLRSSKVRRSKLYYLRNLRGKASRLKQRF 119

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BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: A0A516Z9W5_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A516Z9W5_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.900e-46
Identity = 76/121 (62.81%), Postives = 98/121 (80.99%), Query Frame = 0

Query:    3 NFVVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRF 123
            N +   N  +L+  VE +Y K DLP + +GDTV++GV I+EG K R Q Y+G+II+++N+GINKTI VRRV+ GIGVER FL+HSPK+ +IEIKRSS+VR+SKLYYLR LSGKA+RLKQRF
Sbjct:    4 NEITKINNTALLNKVESEYIKEDLPNVRVGDTVRLGVEIREGKKTRTQAYEGVIISQKNSGINKTITVRRVMQGIGVERCFLLHSPKIKTIEIKRSSKVRRSKLYYLRELSGKATRLKQRF 124

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BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: B2XT92_HETAK (50S ribosomal protein L19, chloroplastic n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT92_HETAK)

HSP 1 Score: 154 bits (388), Expect = 4.380e-46
Identity = 70/113 (61.95%), Postives = 98/113 (86.73%), Query Frame = 0

Query:   11 NSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRF 123
            N ++Q V+ +Y K+D+P + +GDTV++G+LIKEG KER QYY+G+ I+K+N+GINKTI VRR++ GIG+ER+FLIHSPK+ SIEIK+S+ V++SKLYYLR  SGKA+RLKQ++
Sbjct:    5 NLILQKVQQQYLKTDIPNVEVGDTVRLGLLIKEGNKERTQYYEGVTISKKNSGINKTITVRRIMQGIGIERLFLIHSPKIASIEIKKSANVKRSKLYYLRNRSGKATRLKQKY 117

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BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: A0A0R6LUN6_UNDPI (50S ribosomal protein L19, chloroplastic n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUN6_UNDPI)

HSP 1 Score: 153 bits (387), Expect = 8.750e-46
Identity = 79/115 (68.70%), Postives = 90/115 (78.26%), Query Frame = 0

Query:    9 NKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRF 123
            N   LI SVE  + K +L  +F+GDTVKIGV IKEG KERIQYYQGII+ K N+GIN TI VR+V  GIGVER FLIHSPK  SIE+ +SSRVR+SKLYYLR + GK SRLKQRF
Sbjct:   11 NDKELIDSVESVHIKKNLSKIFVGDTVKIGVFIKEGNKERIQYYQGIILGKNNSGINLTISVRKVFQGIGVERNFLIHSPKFESIEVIKSSRVRRSKLYYLRSIVGKGSRLKQRF 125

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BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: A0A2I4Q2C7_9PHAE (50S ribosomal protein L19, chloroplastic n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2C7_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.000e-45
Identity = 74/118 (62.71%), Postives = 97/118 (82.20%), Query Frame = 0

Query:    8 FNKN--SLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRF 123
            F+KN  +LI SVE  Y K+D+  + +GDTVKIG+ IKEG K+RIQYYQGI+I+K+NTGIN  I+VR+   GIGVER FL+HSPK  S+++ +S+R+R+SKLYYLR +SGKASRLKQ+F
Sbjct:   11 FSKNYKTLIDSVEKLYCKNDIKMVLVGDTVKIGISIKEGNKDRIQYYQGIVISKKNTGINLKIVVRKTFQGIGVERQFLLHSPKFQSVQVLKSARIRRSKLYYLRNISGKASRLKQKF 128

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BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: A0A023HCD8_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A023HCD8_9STRA)

HSP 1 Score: 152 bits (383), Expect = 2.770e-45
Identity = 75/119 (63.03%), Postives = 99/119 (83.19%), Query Frame = 0

Query:    5 VVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRF 123
            ++T N + +I+++++++ K ++P + IGD V+IGV I EG KER+QYYQG +IAK+NT IN TI VR+VL GIGVER+FLIHSPK++SI I RS+RVR+SKLYYLR L GKASRLKQRF
Sbjct:    1 MLTLNNSEIIKNLQNQFLKENIPDIAIGDLVEIGVKIIEGNKERVQYYQGNVIAKKNTSINTTITVRKVLQGIGVERIFLIHSPKVDSISILRSARVRRSKLYYLRNLKGKASRLKQRF 119

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BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: A0A514CQ32_9STRA (50S ribosomal protein L19, chloroplastic n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A514CQ32_9STRA)

HSP 1 Score: 152 bits (383), Expect = 3.040e-45
Identity = 76/117 (64.96%), Postives = 97/117 (82.91%), Query Frame = 0

Query:    8 FNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRFN 124
            FNK +L+  VE  Y K DLP + +GDTV++GV IKEG K RIQ ++G++IAK+N GINKTI VRRVL GIGVER FL++SPK+ +IE+ RSS+VR+SKLYYLR L+GKA+RLKQ+FN
Sbjct:    6 FNKTNLMLHVESAYTKKDLPMISVGDTVRLGVEIKEGEKIRIQAFEGVVIAKKNHGINKTITVRRVLQGIGVERCFLVNSPKIKTIELIRSSKVRRSKLYYLRDLAGKATRLKQKFN 122

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BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Match: A0A1Z8UKX8_9PROT (50S ribosomal protein L19 n=2 Tax=cellular organisms TaxID=131567 RepID=A0A1Z8UKX8_9PROT)

HSP 1 Score: 152 bits (383), Expect = 3.240e-45
Identity = 72/112 (64.29%), Postives = 94/112 (83.93%), Query Frame = 0

Query:   13 LIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQYYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSRVRKSKLYYLRGLSGKASRLKQRFN 124
            L+ +VE KY K D+P + IGDT+K+G+ IKEG K R+Q Y+G++I+K+  GIN T+ VRR++ GIG+ER FLIHSPK+ SIEIKRSS+VR++KLYYLR LSGKA+RLKQRFN
Sbjct:   14 LLNTVESKYLKVDIPNIRIGDTLKLGIEIKEGEKTRVQAYEGVVISKKGAGINLTVTVRRIMQGIGIERCFLIHSPKVKSIEIKRSSKVRRAKLYYLRNLSGKATRLKQRFN 125

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot

BLAST of mRNA_H-elongata_contig178272.4700.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A7S6UA05_9STRA	4.620e-79	99.19	50S ribosomal protein L19, chloroplastic n=1 Tax=S...	[more]
A0A8E6D2H5_9PHAE	2.240e-55	70.16	50S ribosomal protein L19, chloroplastic n=1 Tax=I...	[more]
A0A0K2RWP5_9STRA	4.130e-47	64.71	50S ribosomal protein L19, chloroplastic n=1 Tax=T...	[more]
A0A516Z9W5_9STRA	1.900e-46	62.81	50S ribosomal protein L19, chloroplastic n=1 Tax=F...	[more]
B2XT92_HETAK	4.380e-46	61.95	50S ribosomal protein L19, chloroplastic n=3 Tax=H...	[more]
A0A0R6LUN6_UNDPI	8.750e-46	68.70	50S ribosomal protein L19, chloroplastic n=25 Tax=...	[more]
A0A2I4Q2C7_9PHAE	2.000e-45	62.71	50S ribosomal protein L19, chloroplastic n=1 Tax=D...	[more]
A0A023HCD8_9STRA	2.770e-45	63.03	50S ribosomal protein L19, chloroplastic n=1 Tax=L...	[more]
A0A514CQ32_9STRA	3.040e-45	64.96	50S ribosomal protein L19, chloroplastic n=1 Tax=R...	[more]
A0A1Z8UKX8_9PROT	3.240e-45	64.29	50S ribosomal protein L19 n=2 Tax=cellular organis...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001857	Ribosomal protein L19	PRINTS	PR00061	RIBOSOMALL19	coord: 97..122 score: 55.77 coord: 43..72 score: 44.31 coord: 13..42 score: 34.17
IPR001857	Ribosomal protein L19	PFAM	PF01245	Ribosomal_L19	coord: 13..122 e-value: 1.9E-41 score: 140.5
IPR001857	Ribosomal protein L19	TIGRFAM	TIGR01024	TIGR01024	coord: 12..122 e-value: 3.6E-41 score: 137.8
IPR001857	Ribosomal protein L19	PIRSF	PIRSF002191	Ribosomal_L19	coord: 1..124 e-value: 2.4E-43 score: 145.2
IPR001857	Ribosomal protein L19	PANTHER	PTHR15680	RIBOSOMAL PROTEIN L19	coord: 10..124
IPR001857	Ribosomal protein L19	HAMAP	MF_00402	Ribosomal_L19	coord: 11..123 score: 29.251
IPR038657	Ribosomal protein L19 superfamily	GENE3D	2.30.30.790		coord: 13..123 e-value: 7.7E-11 score: 43.8
None	No IPR available	PANTHER	PTHR15680:SF11		coord: 10..124
IPR018257	Ribosomal protein L19, conserved site	PROSITE	PS01015	RIBOSOMAL_L19	coord: 95..110
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 10..124

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig178272	contig	H-elongata_contig178272:657..1031 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig178272.4700.1	mRNA_H-elongata_contig178272.4700.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig178272 657..1031 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig178272.4700.1 ID=prot_H-elongata_contig178272.4700.1|Name=mRNA_H-elongata_contig178272.4700.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
MDNFVVTFNKNSLIQSVEHKYYKSDLPTLFIGDTVKIGVLIKEGTKERIQ
YYQGIIIAKQNTGINKTIIVRRVLHGIGVERMFLIHSPKLNSIEIKRSSR
VRKSKLYYLRGLSGKASRLKQRFN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001857	Ribosomal_L19
IPR038657	L19_sf
IPR018257	Ribosomal_L19_CS
IPR008991	Translation_prot_SH3-like_sf