prot_H-elongata_contig17826.4698.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig17826.4698.1
Unique Nameprot_H-elongata_contig17826.4698.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length599
Homology
BLAST of mRNA_H-elongata_contig17826.4698.1 vs. uniprot
Match: A0A6H5LCS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCS2_9PHAE)

HSP 1 Score: 492 bits (1267), Expect = 6.820e-165
Identity = 256/476 (53.78%), Postives = 347/476 (72.90%), Query Frame = 0
Query:  113 QSGYKRGSRRST--VTGLLGFPIHWNEDDSDYDDTEDETYKPSSPSFGNASPIRTRNTASSSRTARGKGMRERNGKRMNNTPGRGGQRQQGFPTKLSTEVVLNGIVRPYLGVASKCALQRTCKSMRQLVDMPESWQSLDLRACVIGRRTMRSGRRSILSNQPLFSLARSVVQQSRFSRLTAVDLRGLNLGAMGSPPDLLVTLFKACRNLTKLNLWRTFVEHETLPQPDSAVEKAIADHLPGVEHLALEMDASNKGIKILLEGCTRLRSLHIGSRSNRRGDSVSMYPNDLGMKVFATIGAPCLETLSLVDKINIGAPGLGYILNVSSCPQLKSLILIRSARVNDRCIKAIAPEMDRITSLTLDQCPIKPATVGLVVERCLQLSRLVICTRNGVLEKPQEGRPLLDLIFTRCSAKLTTVDIQRVLPGDPSNEVVQGVASVPSWLKKDAVLHNTVVKSTLPRIMTGFVETPDDRVSRFM 586
            ++G +   R+ST  V G+ G P+ WN +D DYDD+EDE+Y   S   G + P     TA +++  + +G    +    +     G +R   +  +LS +VVL+GI+RPYL   SKCALQRTC  MR+L+D P++W++LDLRA +IGRRTM+SGR+SILS QPLF LARSVVQQ RFS L  VD++GLNLGAMGS PDLLVTLF++CR++T LNLW+T+VE E LPQP  +VE  IA HLPGV HLALE+D SN+G+K+LLEGCTRL+SLHIGSRSNR GDS+SMYPNDLGMK F T+GAP LETL+LVDK NIGA GL  +L+ S+CP+L+ L L+R+ RVN+ C+KAIAP M R+TSLTLDQC + P+TV  ++++C +L+ +V+ T++G+L++PQ GR LL+ +  +  +KL+ +++QR+     +   V G  +VP WL +D  L  TV+    PRI+ G  ET D+R++ FM
Sbjct:  130 EAGERCKKRKSTRKVPGIFGIPVAWNVEDCDYDDSEDESYTQQS---GGSGPPTVGATAFAAKCTKTRGSTSVSSATRSRVVRGGRRRGTDWMAELSADVVLHGIIRPYLCSTSKCALQRTCNQMRRLLDSPDAWETLDLRAHIIGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQFSVETVIAQHLPGVRHLALEVDDSNRGLKVLLEGCTRLKSLHIGSRSNRAGDSISMYPNDLGMKAFTTVGAPYLETLTLVDKFNIGAAGLRCLLDPSACPRLRKLTLVRTGRVNNHCLKAIAPAMGRLTSLTLDQCLVDPSTVQFILDKCPELTSIVVSTQHGLLQQPQGGRALLEYLLAQGPSKLSKIEVQRL----SARGSVLG--NVPHWLVQDPGLCATVLGWNSPRIVLGPAETVDERIAPFM 596          
BLAST of mRNA_H-elongata_contig17826.4698.1 vs. uniprot
Match: D7FPP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP5_ECTSI)

HSP 1 Score: 475 bits (1223), Expect = 1.860e-161
Identity = 232/382 (60.73%), Postives = 307/382 (80.37%), Query Frame = 0
Query:  205 KLSTEVVLNGIVRPYLGVASKCALQRTCKSMRQLVDMPESWQSLDLRACVIGRRTMRSGRRSILSNQPLFSLARSVVQQSRFSRLTAVDLRGLNLGAMGSPPDLLVTLFKACRNLTKLNLWRTFVEHETLPQPDSAVEKAIADHLPGVEHLALEMDASNKGIKILLEGCTRLRSLHIGSRSNRRGDSVSMYPNDLGMKVFATIGAPCLETLSLVDKINIGAPGLGYILNVSSCPQLKSLILIRSARVNDRCIKAIAPEMDRITSLTLDQCPIKPATVGLVVERCLQLSRLVICTRNGVLEKPQEGRPLLDLIFTRCSAKLTTVDIQRVLPGDPSNEVVQGVASVPSWLKKDAVLHNTVVKSTLPRIMTGFVETPDDRVSRFM 586
            +LSTEVVL+GI+RPYL   SKCALQRTC  M +L+D P++W++LDLRA VIGRRTM+SGR+SILS QPLF LARSVVQQ RFS L  VD++GLNLGAMGS PDLLVTLF++CR++T LNLW+T+VE E LPQP  +VE  IA HLPGV HLALE+DASN+G+++LLEGCTRL+SLHIGSRSN+ GDS+SMYPNDLGMK F  +GAP LETL+LVDK+NIGA GL  +LN S+CP+L++L L+R+ RVND C+KAIAP M R+TSLTLDQCP+KP+TV  ++++C +L+ +V+ T++G+L++PQ+GR LL+ +  +  ++L+ +++QR+     +   V G  +VP WL +D  L  TV++   PRI+ G  ET D+R++ FM
Sbjct:    3 ELSTEVVLHGIIRPYLCSTSKCALQRTCNQMHRLLDTPDAWETLDLRAHVIGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQFSVETVIAQHLPGVHHLALEVDASNRGLRVLLEGCTRLKSLHIGSRSNQAGDSISMYPNDLGMKAFTAVGAPYLETLTLVDKVNIGAAGLRCLLNPSACPRLRTLTLVRTGRVNDHCLKAIAPAMGRLTSLTLDQCPVKPSTVQFILDKCPELTSMVVSTQHGLLQQPQDGRALLEYLLAQGPSRLSKIEVQRL----SARGSVLG--NVPYWLVQDPGLCATVLEWISPRIVIGPAETADERIAPFM 378          
BLAST of mRNA_H-elongata_contig17826.4698.1 vs. uniprot
Match: A0A835YZJ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZJ4_9STRA)

HSP 1 Score: 101 bits (251), Expect = 9.470e-20
Identity = 71/221 (32.13%), Postives = 114/221 (51.58%), Query Frame = 0
Query:  204 TKLSTEVVLNGIVRPYLGVASKCALQRTCKSMRQLVDMPESWQSLDLRACVIG-RRTMRSGRRSILSNQPLFSLARSVVQQSRFSRLTAVDLRGLNLGAMGSPPDLLVTLFKACRNLTKLNLWRTFVEHETLPQPDSAVEKAIADHLPGVEHLALEMDA-SNKGIKILLEGCTRLRSLHIGSRSNRRGDSVSMYPNDLGMKVFATIGAPCLETLSLVDKIN 422
            T L  E +L  I+ P+L    K  L   C + R+L++ PE+W  LD+   V+G  +++R+GR S L+  P +   + V+QQ RFS +TA +L  L LG   S PDLL  LF  C  +T L++     +    P     +E+ +A + P ++ L + + + SN    +LL+ C +L+ L +       G  +S+ P  L     A+  APCLE L +   I+
Sbjct:   97 TGLPPETLLRHIILPHLSQLDKLRLHMACSATRRLLEAPEAWTELDVSLAVVGITKSLRTGRVSKLTPLPAYMRCKDVLQQKRFSNITAANLSRLMLGT-ASNPDLLAELFARCPKVTSLDITNATADRS--PYAYGVLERFLATNAPQLQRLRITVHSGSNATPVMLLQECKQLKRLALNVLP---GQQLSI-PESL-----ASAQAPCLEELEISAAIS 305          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17826.4698.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5LCS2_9PHAE6.820e-16553.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPP5_ECTSI1.860e-16160.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YZJ4_9STRA9.470e-2032.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 205..531
e-value: 9.5E-25
score: 89.2
NoneNo IPR availablePANTHERPTHR38926FAMILY NOT NAMEDcoord: 294..383
coord: 410..497
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 230..498

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17826contigH-elongata_contig17826:519..6704 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17826.4698.1mRNA_H-elongata_contig17826.4698.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig17826 96..6787 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig17826.4698.1 ID=prot_H-elongata_contig17826.4698.1|Name=mRNA_H-elongata_contig17826.4698.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=599bp
MESSDEESLADMREHETLGEARKRRALGGGSKPRNGSKKPRDSGHHGRNV
CGGKGKRHQPSAVTKGSSSADQCRKSGQLVPKSNNGTAAKRKRGGINKGN
KGKGKGKEEEKLQSGYKRGSRRSTVTGLLGFPIHWNEDDSDYDDTEDETY
KPSSPSFGNASPIRTRNTASSSRTARGKGMRERNGKRMNNTPGRGGQRQQ
GFPTKLSTEVVLNGIVRPYLGVASKCALQRTCKSMRQLVDMPESWQSLDL
RACVIGRRTMRSGRRSILSNQPLFSLARSVVQQSRFSRLTAVDLRGLNLG
AMGSPPDLLVTLFKACRNLTKLNLWRTFVEHETLPQPDSAVEKAIADHLP
GVEHLALEMDASNKGIKILLEGCTRLRSLHIGSRSNRRGDSVSMYPNDLG
MKVFATIGAPCLETLSLVDKINIGAPGLGYILNVSSCPQLKSLILIRSAR
VNDRCIKAIAPEMDRITSLTLDQCPIKPATVGLVVERCLQLSRLVICTRN
GVLEKPQEGRPLLDLIFTRCSAKLTTVDIQRVLPGDPSNEVVQGVASVPS
WLKKDAVLHNTVVKSTLPRIMTGFVETPDDRVSRFMKFAPLSNEERQG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf