mRNA_H-elongata_contig17818.4696.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17818.4696.1
Unique NamemRNA_H-elongata_contig17818.4696.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17818.4696.1 vs. uniprot
Match: D7FHU0_ECTSI (Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHU0_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.110e-31
Identity = 55/73 (75.34%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:    1 EEMVKWKKLTAGMSVLTLIVTGYVIATEEHHHKDEDAPVPSYMQIRNKPFPWTCAGCSLLDSKCFQKCKEERE 219
            EEM KWKK+TAGM VL+L VT  V+ATEEHHH+DEDAP+PSYM+IRNKP PW CA C+LLDS CF KCK ERE
Sbjct:   34 EEMAKWKKMTAGMGVLSLAVTTLVLATEEHHHRDEDAPIPSYMKIRNKPHPWNCADCTLLDSACFAKCKAERE 106
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BLAST of mRNA_H-elongata_contig17818.4696.1 vs. uniprot
Match: A0A4D9D930_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D930_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 8.270e-13
Identity = 31/74 (41.89%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 EEMVKWKKLTAGMSVLTLIVTGY-VIATEEHHHKDE-DAPVPSYMQIRNKPFPWTCAGCSLLDSKCFQKCKEER 216
            +E+ KW+K++   + + ++++G  +++   H H +  D P+P YM IR+KPFPW C+ CSL D+ CF+KCK ER
Sbjct:   32 DEVDKWRKISIVATGVVILMSGRELLSLSSHGHGEHSDKPLPDYMHIRSKPFPWECSDCSLFDTDCFKKCKAER 105
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BLAST of mRNA_H-elongata_contig17818.4696.1 vs. uniprot
Match: B7G1T6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G1T6_PHATC)

HSP 1 Score: 67.4 bits (163), Expect = 7.950e-10
Identity = 30/73 (41.10%), Postives = 45/73 (61.64%), Query Frame = 1 
Query:    4 EMVKWKKLTAGMSV-LTLIVTGYVIATEEHHHKDEDAPVPSYMQIRNKPFPWTCAGCSLLDSKCFQKCKEERE 219
            EM +W  +T  +++ + ++   Y    EEH H+ E+  VP +M IR K FPW C  C L DSKC++KC+ E+E
Sbjct:   68 EMWRWVNITFWVAIPICVLSAAYTFFFEEHGHRIEEN-VPEFMGIRTKEFPWECGECDLFDSKCWKKCRAEKE 139
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BLAST of mRNA_H-elongata_contig17818.4696.1 vs. uniprot
Match: A0A7S4EH99_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EH99_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.210e-9
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:   73 IATEEHHHKDEDAPVPSYMQIRNKPFPWTCAGCSLLDSKCFQKCKEER 216
            +A EEHHH+  D P+P YM IR+K FPW C  C L D  C++KC+EE+
Sbjct:   58 LAIEEHHHRP-DGPLPEYMSIRSKEFPWECDQCPLFDLNCWKKCREEQ 104
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BLAST of mRNA_H-elongata_contig17818.4696.1 vs. uniprot
Match: B8BXS5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXS5_THAPS)

HSP 1 Score: 57.0 bits (136), Expect = 3.420e-6
Identity = 27/76 (35.53%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:    1 EEMVKWKKLTAGMS----VLTLIVTGYVIATEEHHHKDEDAPVPSYMQIRNKPFPWTCAGCSLLDSKCFQKCKEER 216
            +EM KW K++A ++    VL+++   +++   +H H+    P+P YM I+ K FPW C  C+L D +C++KC+ E+
Sbjct:   67 QEMWKWVKISAVVATPVCVLSVLKDIFLV---DHVHRPH-GPLPDYMNIQVKEFPWECETCALFDLECWKKCRAEQ 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17818.4696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FHU0_ECTSI1.110e-3175.34Cytochrome c oxidase subunit VIa n=2 Tax=Ectocarpu... [more]
A0A4D9D930_9STRA8.270e-1341.89Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
B7G1T6_PHATC7.950e-1041.10Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S4EH99_9STRA1.210e-954.17Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
B8BXS5_THAPS3.420e-635.53Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17818contigH-elongata_contig17818:218..2900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.5
Seed ortholog evalue8.4e-26
Seed eggNOG ortholog2880.D7FHU0
KEGG koko:K02266
KEGG TC3.D.4.11,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
EggNOG OGs2BY4U@1,2SBT1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptioncytochrome c oxidase subunit VIa
Ec32 orthologEc-07_006760.1
Exons2
Model size1538
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17818.4696.1prot_H-elongata_contig17818.4696.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17818 224..1590 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930029.4538956-UTR-H-elongata_contig17818:217..2231622930029.4538956-UTR-H-elongata_contig17818:217..223Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17818 218..223 +
1691679252.9756987-UTR-H-elongata_contig17818:217..2231691679252.9756987-UTR-H-elongata_contig17818:217..223Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17818 218..223 +
1622930029.4934297-UTR-H-elongata_contig17818:1590..29001622930029.4934297-UTR-H-elongata_contig17818:1590..2900Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17818 1591..2900 +
1691679253.0123594-UTR-H-elongata_contig17818:1590..29001691679253.0123594-UTR-H-elongata_contig17818:1590..2900Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17818 1591..2900 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930029.4690924-CDS-H-elongata_contig17818:223..3341622930029.4690924-CDS-H-elongata_contig17818:223..334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17818 224..334 +
1691679252.9936295-CDS-H-elongata_contig17818:223..3341691679252.9936295-CDS-H-elongata_contig17818:223..334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17818 224..334 +
1622930029.4821997-CDS-H-elongata_contig17818:1479..15901622930029.4821997-CDS-H-elongata_contig17818:1479..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17818 1480..1590 +
1691679253.0028071-CDS-H-elongata_contig17818:1479..15901691679253.0028071-CDS-H-elongata_contig17818:1479..1590Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17818 1480..1590 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17818.4696.1

>prot_H-elongata_contig17818.4696.1 ID=prot_H-elongata_contig17818.4696.1|Name=mRNA_H-elongata_contig17818.4696.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=74bp
MVKWKKLTAGMSVLTLIVTGYVIATEEHHHKDEDAPVPSYMQIRNKPFPW
TCAGCSLLDSKCFQKCKEEREMK*
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mRNA from alignment at H-elongata_contig17818:218..2900+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17818.4696.1 ID=mRNA_H-elongata_contig17818.4696.1|Name=mRNA_H-elongata_contig17818.4696.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2683bp|location=Sequence derived from alignment at H-elongata_contig17818:218..2900+ (Himanthalia elongata Himel1 dioecious)
GAGGAGATGGTCAAATGGAAGAAGCTAACCGCGGGCATGAGTGTACTTAC
GCTCATCGTGACCGGGTACGTCATCGCCACGGAGGAGCACCACCACAAGG
ATGAGGACGCGCCGGTGGTAAGCCTCTCCTTCTTTAGACGTAAAACTCAT
AATCATGCGCACGAGCGGGGCTTCAACCAACACAACACGAACAGCCTAGC
GGAATAATCTGGCCCAGAGCTTGACACAGTACGTCATTGCCCCCCACCAG
CCCCCCTTCCCCCAACGCCTAGCCTGTTGTTCGTGTTGTGAGCGGAATCA
AGCCGCGCGGCCTTTTGAACAAAATTCGGGGCATTTGATACTCTTGGGGC
ATCTAGTTCGTGGCGTGGTCTAATCTACCCACACGATTTCTGCATCCACT
TCTAGCTGTGGCCGGGCCGCTTAAGCGTGTTGCGTACCGTTTATTGTTTT
ATGCCTTCACTCCCCCCTTGCCAAGGGTGCAAGACCTTCACCTGTGAATG
ACTTGTTTGCCGCAGCGTACGCGACGAGGTATATCACATCCTATATGGGG
TGTGCGTTGTACACCAAGCCCCGGGGTTCCAGGTTGAGAAAAATGGCCGA
CTGTATTTTTATTTAAAAAAACATACGAACTTGTTCAAACCCTCGGAACA
TTCACGCCTTCTTTATTGCACCATGAGAGGTCAAAGTCCAGGGGACCAAC
TATCGTCAAGTTCAAGCGTGTACGTCATTGCTACGTTTTAGCACAAAATT
ATCACACATTTGATTAATCGTGTTCCCCAATAGTTAACGGGTCGAGAGAG
AAGCCCGCCATTATAGCATACACTTTGATTATTTCATCATATGGGGACGT
CAAGCCAGAGCATAGAGAGTGGGCTGTGAAGAGGAAGGGGGATTTTAATG
AGGTTATTTTTAAGTATTGTATTGTTAAGGCATAGGTAAATTAGAATGGA
TATTTGTAACGCCCGGTAAAGATTACCATAATCTACCCAGCGAAACCAAA
TTCTCAGGCGCGAACGGGGACAAAGGAAAAATCATTTTCCATTTCCAATC
GACCCCGAGCAGGATTGGCAACCATATCCGGTTGATCAATACTAAAGGTA
ATGACCACACACACACGCACATACACACAATATGCACCCCCTCTGCCCCT
CTGCCCACCCCCCTTCCATATCTACTAAAGTATCCGTTCTTCCTCCTCCC
TTCCCCCCCCCCCCTGCGCGCCGACCGTGGATCTCTTTGACGGGATGCCG
TCACACACACAGCCCTCGTACATGCAGATCCGCAACAAGCCTTTCCCCTG
GACCTGCGCTGGCTGCTCACTCTTGGACTCCAAGTGCTTCCAGAAGTGCA
AGGAAGAGCGCGAGATGAAGTAGAGATGTGTCGCATCGTGCCGTGTCTTG
TCCTGGCCTTGCCTTGCCTCTCACAGCACCCGTAATGATGATTTCGGTGG
GGGATTTGCGGGAAAGCGGATTGGAATATTTTGCGTTTGGAAAAACGCCA
GTGACGCTTCTCCGCTCTAGGCCGCGAATCTCGCTGCCAGTGCAAAGGCC
GATACAAAAGCAAGAGGAGAGATACCCACGGAAATTTCTCGGCCTCGAAA
AAGGAAGGCGCAGGCAATGAGAAGGGGGGGGGAGGGAGGCGTTATTAGCT
GGTGCGCCCTTCAAACCTGGCAGAAGGAGGGGGAGGAAGGCGTATAGCGG
TCCTCGTCTTCTTCACCAGCAGAGCAAAGGCCCTTCGCGGTCCATTCGCT
TGCACGCCTGTTCTCTCCTCAGAAGATTTTAGTTTTTATTTTCCTCTTTA
TTTTTTGGGGGGGAGGGTGATATCATTTCACGGTTGCTACAAGTCTCGCT
CGGGACGTGGCTTGGGATTTGAACCCCGCCGTGATACTCGACCGCTTTAA
TCCAACCGATTTCTGAACTGTCTCGGAGTCAGCCGTGCTGACGGTATCGC
TGCTGCCTTGAGACTGAGGTGGACGGTAACCGGTTTCCACTGTCAGCCGG
CAAATACACATACTGTAATATTTTGGTAACTGAGAGTAGCAGCTTCAAAA
AGAGCGAGATTCGGGGTAATGCTAAACAATACTGGGTGCTGACTGAACGA
TGATACATATAAAGAGATGAAAGGCTCGGGAGCCCCCTCCAGCACGACAA
TGAGACGTTTTATCAATTCAATTAAGACTGTTAATGATGTTGGTCGATAA
GCGAACTGAGACCGAGGTCCCCTGAACGACCGCAAACGGAAGATAGGGCA
ACATATTACAAAAAAAAGTGGTGTTTGTACTAGCTCTGCAAGATATGAGA
GTCAAATATGCTTGACCCGCCAGTCTGGCCTTCCTTGACACCTCCTACGC
CCCCCCCACCCCCCACCCCGCTGGCCTTTGGTAATAATAGTAGTAATAAG
CTAAGTCGCTCCAATAGTAGGTTGTAATGACCTTAGCGACGATGATACTT
CCCTTTTGAAGAAACCGCGCATCGACGTTTTGTTGTCTCTTTGAGAGTAC
GAAAATATCAGACTCGCTTTGTGTAATTAGTAAATTGCGCACAGCCGCGC
AATCCAGCCCTGTCATGCTAACCATTATATGCTACTCGTATTTTGGTCCT
CCCAATTGTACCACACCCGGTGGCCGTGGTTAGCCATAATAAGCTAAGTT
GGTCTAATAATAGACTGTGATGACCTAAATGAC
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Coding sequence (CDS) from alignment at H-elongata_contig17818:218..2900+

>mRNA_H-elongata_contig17818.4696.1 ID=mRNA_H-elongata_contig17818.4696.1|Name=mRNA_H-elongata_contig17818.4696.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=444bp|location=Sequence derived from alignment at H-elongata_contig17818:218..2900+ (Himanthalia elongata Himel1 dioecious)
ATGGTCAAATGGAAGAAGCTAACCGCGGGCATGAGTGTACTTACGCTCAT
CGTGACCGGGTACGTCATCGCCACGGAGGAGCACCACCACAAGGATGAGG
ACGCGCCGGTGATGGTCAAATGGAAGAAGCTAACCGCGGGCATGAGTGTA
CTTACGCTCATCGTGACCGGGTACGTCATCGCCACGGAGGAGCACCACCA
CAAGGATGAGGACGCGCCGGTGCCCTCGTACATGCAGATCCGCAACAAGC
CTTTCCCCTGGACCTGCGCTGGCTGCTCACTCTTGGACTCCAAGTGCTTC
CAGAAGTGCAAGGAAGAGCGCGAGATGAAGTAGCCCTCGTACATGCAGAT
CCGCAACAAGCCTTTCCCCTGGACCTGCGCTGGCTGCTCACTCTTGGACT
CCAAGTGCTTCCAGAAGTGCAAGGAAGAGCGCGAGATGAAGTAG
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