mRNA_H-elongata_contig178178.4695.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig178178.4695.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE) HSP 1 Score: 121 bits (304), Expect = 6.910e-29 Identity = 69/161 (42.86%), Postives = 99/161 (61.49%), Query Frame = 1
Query: 31 RARGREITVATQNVRTMAVDGKHGVGWAVDILNVYDRLGYDVIGLQETRRSEYSAFNQAGYSVYCSGE--CGQGGVGLAIRTSITRAAR-SPEFISDRLLKVILEPRGRAKAITFFVAYAPTETQNASNKHAFWTRLDRAVEEVPRHEQLFVLMDANARTG 504
R +G+ + VAT NVRT+AV G +G G A +L+ R V+G+QETRR+ + F AG+ V+C G G GVG+A++ S+ + + + EFI +RL+ + L G A+ F A APTE AS+K FW +LD V +P E ++VL+DANARTG
Sbjct: 52 RQQGQLLRVATWNVRTLAVIGVNGYGRAYSVLHEAARQDVSVVGMQETRRAGRTEFAAAGFRVFCCGTETGGVHGVGIAVKESLCKTSTFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTG 212
BLAST of mRNA_H-elongata_contig178178.4695.1 vs. uniprot
Match: UPI00073FE2D8 (craniofacial development protein 2-like n=1 Tax=Lepisosteus oculatus TaxID=7918 RepID=UPI00073FE2D8) HSP 1 Score: 70.1 bits (170), Expect = 5.580e-11 Identity = 45/152 (29.61%), Postives = 76/152 (50.00%), Query Frame = 1
Query: 55 VATQNVRTMAVDGKHGVGWAVDILNVYDRLGYDVIGLQETRRSEYSAFNQAGYSVYCSG--ECGQGGVGLAIRTSITRAARSPEFISDRLLKVILEPRGRAKAITFFVAYAPTETQNASNKHAFWTRLDRAVEEVPRHEQLFVLMDANARTG 504
++T N+R M+ GK + I RL D++G+ E R + F +SVY SG E + GV L +I A S SDR++ + + G+ +T YAPT F+T+++ A+E+VP+ + ++++ D NA+ G
Sbjct: 66 ISTWNIRGMS-QGKLDI-----IKREMIRLNIDLLGISELHRKDNGHFQLDDFSVYYSGHQELRRNGVALIAHKNIAHAVESYTIFSDRIVAICI--CGKPLNVTVLQVYAPTTDAPEDESERFYTKIEEALEQVPKKDIIYIMGDFNAKVG 209
BLAST of mRNA_H-elongata_contig178178.4695.1 vs. uniprot
Match: W5MYU0_LEPOC (Reverse transcriptase domain-containing protein n=1 Tax=Lepisosteus oculatus TaxID=7918 RepID=W5MYU0_LEPOC) HSP 1 Score: 70.1 bits (170), Expect = 6.350e-11 Identity = 45/152 (29.61%), Postives = 76/152 (50.00%), Query Frame = 1
Query: 55 VATQNVRTMAVDGKHGVGWAVDILNVYDRLGYDVIGLQETRRSEYSAFNQAGYSVYCSG--ECGQGGVGLAIRTSITRAARSPEFISDRLLKVILEPRGRAKAITFFVAYAPTETQNASNKHAFWTRLDRAVEEVPRHEQLFVLMDANARTG 504
++T N+R M+ GK + I RL D++G+ E R + F +SVY SG E + GV L +I A S SDR++ + + G+ +T YAPT F+T+++ A+E+VP+ + ++++ D NA+ G
Sbjct: 21 ISTWNIRGMS-QGKLDI-----IKREMIRLNIDLLGISELHRKDNGHFQLDDFSVYYSGHQELRRNGVALIAHKNIAHAVESYTIFSDRIVAICI--CGKPLNVTVLQVYAPTTDAPEDESERFYTKIEEALEQVPKKDIIYIMGDFNAKVG 164
BLAST of mRNA_H-elongata_contig178178.4695.1 vs. uniprot
Match: UPI000C7832C2 (craniofacial development protein 2-like n=1 Tax=Anoplophora glabripennis TaxID=217634 RepID=UPI000C7832C2) HSP 1 Score: 65.9 bits (159), Expect = 9.160e-10 Identity = 46/154 (29.87%), Postives = 77/154 (50.00%), Query Frame = 1
Query: 46 EITVATQNVRTMAVDGKHGVGWAVDILNVYDRLGYDVIGLQETRRSEYSAFNQAGYSVYCSGECGQG-GVGLAIRTSITRAARSPEFISDRLLKVILEPRGRAKAITFFVAYAPTETQNASNKHAFWTRLDRAVEEVPRHEQLFVLMDANARTG 504
EI + T NVR G + VG +++ + ++++ LQET++ E Y+ SG + G G + I + +SDRL L RG+ + I+ +APTE + +K AF+ +L + +E+PR++ VL DANA+ G
Sbjct: 25 EIKIGTWNVR-----GLNQVGAMKQLISEIRKQKFEIVALQETKQKESVMMEIEKYAFLNSGGDNRVLGTGFLVSPEIKSLIMKFKPVSDRLC--YLRIRGKFQNISLINIHAPTEEADLESKEAFYEKLQKEYDEIPRYDLKIVLGDANAKIG 171
BLAST of mRNA_H-elongata_contig178178.4695.1 vs. uniprot
Match: W2T9B2_NECAM (Uncharacterized protein (Fragment) n=1 Tax=Necator americanus TaxID=51031 RepID=W2T9B2_NECAM) HSP 1 Score: 59.7 bits (143), Expect = 5.470e-8 Identity = 44/126 (34.92%), Postives = 68/126 (53.97%), Query Frame = 1
Query: 139 RLGYDVIGLQETRRSE-YSAFNQAGYSVYCSGEC---GQGGVGLAIRTSITRAARSPEFISDRLLKVILEPRGRAKAITFFVAYAPTETQNASNKHAFWTRLDRAVEEVPRHEQLFVLMDANARTG 504
++ YDVIGL ETRR +A + G ++ G C G GGVG+ I+TS+T+ S E ++ R+ ++ + G A+T FVAYAPT + AF+ ++ E ++ V D NA+ G
Sbjct: 29 KIKYDVIGLTETRRRHPLNAVYETGEELFL-GTCDSRGVGGVGVLIKTSMTKNIDSFEQLTTRIGRLRMRRCGSTPALTIFVAYAPTSSYE-EEVDAFYMNMEEFYREGHAFYKVIVC-DFNAKVG 151
BLAST of mRNA_H-elongata_contig178178.4695.1 vs. uniprot
Match: A0A0C2FEX7_9BILA (Uncharacterized protein (Fragment) n=1 Tax=Ancylostoma duodenale TaxID=51022 RepID=A0A0C2FEX7_9BILA) HSP 1 Score: 58.9 bits (141), Expect = 1.300e-7 Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 1
Query: 139 RLGYDVIGLQETRRSE-YSAFNQAGYSVYCSGEC---GQGGVGLAIRTSITRAARSPEFISDRLLKVILEPRGRAKAITFFVAYAPTETQNASNKHAFWTRLDRAVEE 450
++GYDVIGL ETRR + +A G ++ G C G GGVG+ + T++ S E ++ R+ ++ L G A+T FVAYAPT + + AF+ L+ E
Sbjct: 5 KIGYDVIGLTETRRHQPLNATFDTGEELFL-GTCDSRGVGGVGVLVNTNLAINIDSFEQLTTRIGRLRLRRCGSMPAVTIFVAYAPTSSYDEEEIEAFYMDLENFYRE 111
BLAST of mRNA_H-elongata_contig178178.4695.1 vs. uniprot
Match: A0A0K0DIY0_ANGCA (Uncharacterized protein n=1 Tax=Angiostrongylus cantonensis TaxID=6313 RepID=A0A0K0DIY0_ANGCA) HSP 1 Score: 55.1 bits (131), Expect = 1.470e-6 Identity = 40/134 (29.85%), Postives = 65/134 (48.51%), Query Frame = 1
Query: 49 ITVATQNVRTMAVDGKHGVGWAVDILNVYDRLGYDVIGLQETRRSE-YSAFNQAGYSVYCSGEC---GQGGVGLAIRTSITRAARSPEFISDRLLKVILEPRGRAKAITFFVAYAPTETQNASNKHAFWTRLDR 438
+T+ T + RT+A + D+L +GYDV+GL ETRR A G ++ G C G GGVG+ + T+++ S E ++ + ++ L+ G A+T FV YA T F+ L++
Sbjct: 1 MTICTYSARTLASESS-----IEDLLMQTRMIGYDVMGLAETRRRHPLDAVYDTGEELFL-GTCDDRGVGGVGILVNTTLSMNIDSFEQLTTPIGRLRLKRCGSIPALTIFVVYAATSNYEEEEVEVFYMDLEK 128
BLAST of mRNA_H-elongata_contig178178.4695.1 vs. uniprot
Match: A0A016SAW8_9BILA (Uncharacterized protein n=1 Tax=Ancylostoma ceylanicum TaxID=53326 RepID=A0A016SAW8_9BILA) HSP 1 Score: 55.5 bits (132), Expect = 3.230e-6 Identity = 42/138 (30.43%), Postives = 71/138 (51.45%), Query Frame = 1
Query: 49 ITVATQNVRTMAVDGKHGVGWAVDILNVYDRLGYDVIGLQETRRS-EYSAFNQAGYSVYCSGEC---GQGGVGLAIRTSITRAARSPEFISDRLLKVILEPRGRAKAITFFVAYAPTETQNASNKHAFWTRLDRAVEE 450
+T+ T N R +A + D++ ++ YDVIGL ETRR +A G ++ G C G GGVG+ + T++ S + ++ R+ ++ L G +A+T FVAYAPT + + F+ L++ +E
Sbjct: 2 MTICTFNARKLASEAS-----IEDLMVQARKIRYDVIGLNETRRHWPLNATFDTGEELFL-GTCDSRGVGGVGVLVNTNLAMNIDSFKQLTTRIGRLRLRRCGSMRALTVFVAYAPTCSNSEDVIEDFYVDLEKFYKE 133
BLAST of mRNA_H-elongata_contig178178.4695.1 vs. uniprot
Match: A0A6G0VWE7_APHCR (Reverse transcriptase domain-containing protein n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0VWE7_APHCR) HSP 1 Score: 54.7 bits (130), Expect = 1.320e-5 Identity = 39/158 (24.68%), Postives = 74/158 (46.84%), Query Frame = 1
Query: 43 REITVATQNVRTMAVDGKHGVGWAVDILNVYDRLGYDVIGLQETRRSEYSAFNQAGYSVYCSGECG----QGGVGLAIRTSITRAARSPEFISDRLLKVILEPRGRAKAITFFVAYAPTETQNASNKHAFWTRLDRAVEEVPRHEQLFVLMDANARTG 504
R + + T N+RT+ G + I++ + ++ LQE R + + +++ SG CG + GVG I + E I+ R+ + L+ G+ I ++PTE ++A K AF+ +++R + +PR ++ D NA+ G
Sbjct: 38 RILRIGTWNIRTLFKPGALKI-----IIDEITKYNLQIVALQEIRWPDKGSIKHKETTIFYSG-CGDERHEFGVGFVINDRLLHNVNKFEAINKRICFIRLKISGQN--IIIINCHSPTEDKDAETKDAFYEKMERTYDSLPRRAIKIIIGDMNAKIG 187
BLAST of mRNA_H-elongata_contig178178.4695.1 vs. uniprot
Match: A0A8J9W137_BRALA (Hypp565 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9W137_BRALA) HSP 1 Score: 52.4 bits (124), Expect = 8.540e-5 Identity = 44/130 (33.85%), Postives = 64/130 (49.23%), Query Frame = 1
Query: 127 NVYDRLGYDVIGLQETRRSEYSAFNQAGYSVYCSG-ECGQG--GVGLAIRTSITRAARSPEFISDRLLKVILE-PRGRAKAITFFVAYAPTETQNASNKHAFWTRLDRAVEEVPRHEQLFVLMDANARTG 504
N DRL V GL E R + ++ SG + GQ GV LA+ S +RA + +++RLL L GR I VAYAPT K F+ ++ ++++ RH+ ++VL D NA TG
Sbjct: 8 NELDRLSVAVAGLTEVRWPGSGSHVANDFNFLWSGRDDGQHRQGVALALAPSASRALVHWKPVNNRLLLARLRHTHGRVSVI---VAYAPTNMAPDEEKDEFYIQMSALMDDISRHDIIWVLGDFNATTG 134 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178178.4695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig178178.4695.1 >prot_H-elongata_contig178178.4695.1 ID=prot_H-elongata_contig178178.4695.1|Name=mRNA_H-elongata_contig178178.4695.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=168bp LRKSKASNRARARGREITVATQNVRTMAVDGKHGVGWAVDILNVYDRLGYback to top mRNA from alignment at H-elongata_contig178178:310..837+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig178178.4695.1 ID=mRNA_H-elongata_contig178178.4695.1|Name=mRNA_H-elongata_contig178178.4695.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=528bp|location=Sequence derived from alignment at H-elongata_contig178178:310..837+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig178178:310..837+ >mRNA_H-elongata_contig178178.4695.1 ID=mRNA_H-elongata_contig178178.4695.1|Name=mRNA_H-elongata_contig178178.4695.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1008bp|location=Sequence derived from alignment at H-elongata_contig178178:310..837+ (Himanthalia elongata Himel1 dioecious)back to top |