mRNA_H-elongata_contig178100.4694.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig178100.4694.1
Unique NamemRNA_H-elongata_contig178100.4694.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig178100.4694.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 5.050e-7
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    1 PWECPPAPVVEKGLDAMENYYNELRNTKPV-----LIDLRKIVFIGESGAGKTSLIKSIKAGKG 177
            PW  PP  VVEKGL A+E+Y  ++R  +        + L K+V +G S AGKTSL+ SI  G+G
Sbjct:  185 PWIMPPEGVVEKGLPAVESYLLDVRKAEEAGAEVKTLKLLKVVLVGSSQAGKTSLVNSIVEGRG 248
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BLAST of mRNA_H-elongata_contig178100.4694.1 vs. uniprot
Match: A0A6P4XTM6_BRABE (malignant fibrous histiocytoma-amplified sequence 1 homolog n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4XTM6_BRABE)

HSP 1 Score: 53.9 bits (128), Expect = 6.910e-7
Identity = 24/56 (42.86%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:    7 ECPPAPVVEKGLDAMENYYNELRNTKPVLIDLRKIVFIGESGAGKTSLIKSIKAGK 174
            + PP  V + G++++  Y  E+R T+PV ++ RKI+  GESGAGKTS+I ++  G+
Sbjct:  208 QMPPRHVCDSGVESVFQYLREIRRTRPVEVNRRKILVFGESGAGKTSMIHAMLNGR 263
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BLAST of mRNA_H-elongata_contig178100.4694.1 vs. uniprot
Match: A0A7D9EZW1_PARCT (Malignant fibrous histiocytoma-amplified sequence 1 homolog (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9EZW1_PARCT)

HSP 1 Score: 52.0 bits (123), Expect = 3.270e-6
Identity = 22/58 (37.93%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    1 PWECPPAPVVEKGLDAMENYYNELRNTKPVLIDLRKIVFIGESGAGKTSLIKSIKAGK 174
            P + PP  V  +G++++ NY+  ++NTK +     K+V +GES AGKTSL+ ++  G+
Sbjct:  298 PLQVPPVHVCNQGIESVRNYFKAMKNTKNIHAKRLKVVVLGESMAGKTSLVNALMTGE 355
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BLAST of mRNA_H-elongata_contig178100.4694.1 vs. uniprot
Match: A0A7D9HH86_PARCT (Malignant fibrous histiocytoma-amplified sequence 1 homolog n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HH86_PARCT)

HSP 1 Score: 52.0 bits (123), Expect = 3.310e-6
Identity = 22/58 (37.93%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    1 PWECPPAPVVEKGLDAMENYYNELRNTKPVLIDLRKIVFIGESGAGKTSLIKSIKAGK 174
            P + PP  V  +G+ ++ NY+  ++NTK +     K++ +GES AGKTSL+K++  G+
Sbjct:  298 PLQVPPVHVCNQGIQSVRNYFEAMKNTKNIHAKRLKVLVLGESMAGKTSLVKALMTGE 355
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BLAST of mRNA_H-elongata_contig178100.4694.1 vs. uniprot
Match: A0A1G3LK97_9SPIR (COR domain-containing protein n=1 Tax=Spirochaetes bacterium GWB1_27_13 TaxID=1802173 RepID=A0A1G3LK97_9SPIR)

HSP 1 Score: 50.4 bits (119), Expect = 1.160e-5
Identity = 20/54 (37.04%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:    1 PWECPPAPVVEKGLDAMENYYNELRNTKPVLIDLRKIVFIGESGAGKTSLIKSI 162
            P E PP  ++E+G +A+ NY+++++    + I   K++F+GE G+GKTSL++ +
Sbjct:  355 PIESPPIEIIEQGKEAIRNYFSQIKKHGTIPIYEAKLMFVGEPGSGKTSLMEKL 408
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BLAST of mRNA_H-elongata_contig178100.4694.1 vs. uniprot
Match: A0A6P4Y5Y3_BRABE (malignant fibrous histiocytoma-amplified sequence 1 homolog n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Y5Y3_BRABE)

HSP 1 Score: 50.4 bits (119), Expect = 1.170e-5
Identity = 22/54 (40.74%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   13 PPAPVVEKGLDAMENYYNELRNTKPVLIDLRKIVFIGESGAGKTSLIKSIKAGK 174
            PPA V  +G+DA+  Y++EL  ++  +    K+V +GE+ AGKTSL++++ +GK
Sbjct:  423 PPAEVCRQGIDAIRQYFDELERSEEAVSAHLKVVVLGETMAGKTSLVQTLNSGK 476
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BLAST of mRNA_H-elongata_contig178100.4694.1 vs. uniprot
Match: A0A1D8TVJ7_9CYAN (GTPase n=2 Tax=Moorena TaxID=1155738 RepID=A0A1D8TVJ7_9CYAN)

HSP 1 Score: 50.1 bits (118), Expect = 1.590e-5
Identity = 24/50 (48.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:   13 PPAPVVEKGLDAMENYYNELRNTKPVLIDLRKIVFIGESGAGKTSLIKSI 162
            PP  VV KG+DA++ Y+ +LR      I   K++ +GE+GAGKTSL K I
Sbjct:  260 PPPEVVSKGVDAIKQYFRQLRKEGKDYIYEAKLLIVGEAGAGKTSLAKKI 309
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BLAST of mRNA_H-elongata_contig178100.4694.1 vs. uniprot
Match: A0A6M0BEZ1_9CYAN (GTPase n=1 Tax=Moorena sp. SIO3I6 TaxID=2607831 RepID=A0A6M0BEZ1_9CYAN)

HSP 1 Score: 49.7 bits (117), Expect = 2.170e-5
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    1 PWECPPAPVVEKGLDAMENYYNELRNTKPVLIDLRKIVFIGESGAGKTSLIKSI 162
            P   PP  VV KG+DA++ Y+ +LR      I   K++ +GE GAGKTSL + I
Sbjct:  219 PLVVPPPEVVSKGVDAVKQYFRQLREEGEAYIYEAKLLIVGEPGAGKTSLAQKI 272
[Close]
BLAST of mRNA_H-elongata_contig178100.4694.1 vs. uniprot
Match: A0A6P0ZUE8_9CYAN (GTPase n=1 Tax=Moorena sp. SIO1F2 TaxID=2607819 RepID=A0A6P0ZUE8_9CYAN)

HSP 1 Score: 49.7 bits (117), Expect = 2.170e-5
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:    1 PWECPPAPVVEKGLDAMENYYNELRNTKPVLIDLRKIVFIGESGAGKTSLIKSI 162
            P   PP  VV KG+DA++ Y+ +LR      I   K++ +GE GAGKTSL + I
Sbjct:  256 PLVVPPPEVVSKGVDAVKQYFRQLREEGEAYIYEAKLLIVGEPGAGKTSLAQKI 309
[Close]
BLAST of mRNA_H-elongata_contig178100.4694.1 vs. uniprot
Match: A0A6P4XPW3_BRABE (uncharacterized protein LOC109462063 n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4XPW3_BRABE)

HSP 1 Score: 49.3 bits (116), Expect = 3.000e-5
Identity = 22/54 (40.74%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   13 PPAPVVEKGLDAMENYYNELRNTKPVLIDLRKIVFIGESGAGKTSLIKSIKAGK 174
            PPA V ++G+ A+  Y+ EL  +K  +    K+V +GE+ AGKTSLI+++++G+
Sbjct:  625 PPAEVCDQGIAAIRQYFEELERSKETISAHLKVVILGETMAGKTSLIQTLESGE 678
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig178100.4694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JW02_9PHAE5.050e-745.31Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6P4XTM6_BRABE6.910e-742.86malignant fibrous histiocytoma-amplified sequence ... [more]
A0A7D9EZW1_PARCT3.270e-637.93Malignant fibrous histiocytoma-amplified sequence ... [more]
A0A7D9HH86_PARCT3.310e-637.93Malignant fibrous histiocytoma-amplified sequence ... [more]
A0A1G3LK97_9SPIR1.160e-537.04COR domain-containing protein n=1 Tax=Spirochaetes... [more]
A0A6P4Y5Y3_BRABE1.170e-540.74malignant fibrous histiocytoma-amplified sequence ... [more]
A0A1D8TVJ7_9CYAN1.590e-548.00GTPase n=2 Tax=Moorena TaxID=1155738 RepID=A0A1D8T... [more]
A0A6M0BEZ1_9CYAN2.170e-544.44GTPase n=1 Tax=Moorena sp. SIO3I6 TaxID=2607831 Re... [more]
A0A6P0ZUE8_9CYAN2.170e-544.44GTPase n=1 Tax=Moorena sp. SIO1F2 TaxID=2607819 Re... [more]
A0A6P4XPW3_BRABE3.000e-540.74uncharacterized protein LOC109462063 n=1 Tax=Branc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig178100contigH-elongata_contig178100:181..1292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size182
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930029.3343873-CDS-H-elongata_contig178100:180..3261622930029.3343873-CDS-H-elongata_contig178100:180..326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178100 181..326 +
1691679252.941311-CDS-H-elongata_contig178100:180..3261691679252.941311-CDS-H-elongata_contig178100:180..326Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178100 181..326 +
1622930029.3509684-CDS-H-elongata_contig178100:1256..12901622930029.3509684-CDS-H-elongata_contig178100:1256..1290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178100 1257..1290 +
1691679252.9487126-CDS-H-elongata_contig178100:1256..12901691679252.9487126-CDS-H-elongata_contig178100:1256..1290Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig178100 1257..1290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig178100.4694.1prot_H-elongata_contig178100.4694.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig178100 181..1290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig178100.4694.1

>prot_H-elongata_contig178100.4694.1 ID=prot_H-elongata_contig178100.4694.1|Name=mRNA_H-elongata_contig178100.4694.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=60bp
PWECPPAPVVEKGLDAMENYYNELRNTKPVLIDLRKIVFIGESGAGKTSL
IKSIKAGKGK
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mRNA from alignment at H-elongata_contig178100:181..1292+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig178100.4694.1 ID=mRNA_H-elongata_contig178100.4694.1|Name=mRNA_H-elongata_contig178100.4694.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1112bp|location=Sequence derived from alignment at H-elongata_contig178100:181..1292+ (Himanthalia elongata Himel1 dioecious)
CCATGGGAATGCCCTCCAGCACCTGTGGTCGAGAAGGGCCTCGATGCGAT
GGAGAACTATTACAATGAGCTCAGAAACACAAAACCTGTCTTGATCGACT
TGCGCAAGATTGTGTTCATCGGAGAGAGTGGAGCTGGCAAGACCAGGTGC
GACTCATCATGGTTGAACATACAAGATTCAACATTGGCTGAGAGAATAAA
CACGGTGACGCGGACACCCGTCTGGCGACACTAAACTCTCAGTCGCGAAC
GGGGATAGGAAAAAACATTTTCGCTTTTCAGCCGACCTCTAAAAGGAGGT
AACAAAATTTAGTTCATCTTTACTCAGCTATATGTACGAAAAGTCCGAAC
GCGACCCGGACCTAACCTTTTGACTTATACCACCACACACGCCCCTATCG
AAATGAATGTGCTCATATTTTTATATGGCTGCATAACAAGCGTTACATCA
CGACGATACCCGCACAAGCTTCACTCTAGTTTTTCGTCGTAAAACGTAAT
CTCGAACACTAGCGTTTGACCGAAGCGAGCGATCAACGCCGTCATTCGGA
GTCGCTTTGGCCTCTACTGTGGCAACGTGATGCACTGAATCTTGTTTTCA
TGTATGGCCTTTATCTACACTACACTTTCGTTTTGCGCTTGTTTTCGTGT
TTCCTATCATCAGCGGTAACGAGGAGCTTTCTATTTGTTTCCTGTTTGAC
CCACTTCACTTCATCCTTTATTTTTTCGCGATGGCGTGCGGCGTGATTCC
AGTACTAGCATTCGTCAGGGAAGCATGAGAGCGACAGGAAATGTCCAATG
TTATGGGTAACCATAACTAACGGCCCACGCATCCGCGTTGTAAACCATTT
AATTTAACTAAAGCGCATTTTTCCCCTCTTGCCGAGATGATCAATCTGAA
CTCATTGCTACGTCGTGATGTCTACTGTATTTTTCTCAGAATGCTTGGTT
GATGCAATCACATTCGTGAATAGCTTCAGAATACAGCTGACTATGTGAAT
ATTGTATAAACGTTTTTAATGGTGTATATAATATTGTTTTTGTGCTGTAC
ATAAAAACTCCAACGTCGCTCTAAAGCCTGATCAAGAGCATCAAGGCCGG
GAAGGGGAAACT
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Coding sequence (CDS) from alignment at H-elongata_contig178100:181..1292+

>mRNA_H-elongata_contig178100.4694.1 ID=mRNA_H-elongata_contig178100.4694.1|Name=mRNA_H-elongata_contig178100.4694.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=360bp|location=Sequence derived from alignment at H-elongata_contig178100:181..1292+ (Himanthalia elongata Himel1 dioecious)
CCATGGGAATGCCCTCCAGCACCTGTGGTCGAGAAGGGCCTCGATGCGAT
GGAGAACTATTACAATGAGCTCAGAAACACAAAACCTGTCTTGATCGACT
TGCGCAAGATTGTGTTCATCGGAGAGAGTGGAGCTGGCAAGACCAGCCAT
GGGAATGCCCTCCAGCACCTGTGGTCGAGAAGGGCCTCGATGCGATGGAG
AACTATTACAATGAGCTCAGAAACACAAAACCTGTCTTGATCGACTTGCG
CAAGATTGTGTTCATCGGAGAGAGTGGAGCTGGCAAGACCAGCCTGATCA
AGAGCATCAAGGCCGGGAAGGGGAAACCTGATCAAGAGCATCAAGGCCGG
GAAGGGGAAA
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