mRNA_H-elongata_contig17797.4688.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17797.4688.1
Unique NamemRNA_H-elongata_contig17797.4688.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig17797.4688.1 vs. uniprot
Match: A0A6H5JCU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU0_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 3.420e-54
Identity = 196/574 (34.15%), Postives = 270/574 (47.04%), Query Frame = 1 
Query:   64 MRCVLVSCCGIPASGKTTFCRGVIISAASYDPHGRSQSKPCLKRSSTDAAMATMISRVQTPIRVSHVCFDEHIDLARRRRNSRSRL-----------------PVEGGGYAHDVVAGEGRESDGQENAGSEGSVRGTGSAGKVYNDVPREKDHSYAVESR---------------------EGGAECWHEGRRKAMAEVEGLAAGTRV---AEPSSVYISGEAGVDTPSCPGIEANRDQSEEIGCDASLHVVLADDNMHFRSMRHDVLRLARKYGCGYVQVYFPTEVEVAFRRNAARVNTVPKAVIRKMAASIQPPDPQLCKWERYTMIVETPTYHE---------------QSDGDVSGFVAN-----THVEADTPLACHF--GDNS---AGNSVAVTFSL--FWQIVARAA-EDPVPSLLSVSLSSAPEQEEARKATRVSILHQLDLELREAVNRIADKASKASLTRGTFRAVMDACTAARRTSMRSARRTKEDEN-DARNTHTATEISRIQNDLTEGSRGQDSTLENCDEKPTTHARSPRGIFASEFAQGIGVVDGLGASNRVALVDAAKG 1575
            MRCVLVSCCG+PA+GKTTFCR   I+A++  P   +       R   D++    I      I VSHVCFDE+I+ A R R   SR                  P     +  D  AG       + N G +                  E   +YAVES+                     E GA  WH+GRR AMAE+E LA G      A P +  ISG  G  + +C                A    +L+++      MR D        GCGY QV+FPT+VE+A +RN AR  +V +AVIRKMAA+IQPPDP+  KWER+T++V +P+                  ++  D +    N     +  +  +P    F  GDN    A  S  V  S   FW ++A AA EDP P L S S S   ++E  R+AT+ S++HQ DL LREAV R+A+ A+ A L+R   R VM AC+A+R+ ++R AR T +  +    N  TA  ++ + +D  +G      T    D  PT+ + S    FA EF   +G +D +  S +V LV AA+G
Sbjct:    1 MRCVLVSCCGLPAAGKTTFCRS--IAASNRFPTQGATDTATDTRVERDSSDCGPIINGGPQIWVSHVCFDEYINSAHRPRRQHSRSSNDDEPSFNARISSHLSPASDVHHKKDQGAGVESGEKAELNLGRQAGADERDMKESTTYPQTHEATGTYAVESQGATETTPHTSLAEPPGASEGGEDGARWWHDGRRAAMAELEALAKGAESGARAGPKTAVISG--GTVSSAC----------------AMPPAMLSEE------MRED--------GCGYAQVFFPTDVEIAVKRNTARGTSVSEAVIRKMAANIQPPDPKRFKWERHTVVVSSPSGSRSPQEGTEMVPPLKPHRTPPDTANLYRNPPRGSSRAKILSPSGGDFDAGDNVSKVAEGSTTVVHSQRRFWCVIATAAGEDPKP-LASDSASRVLDKEADREATKASVMHQYDLHLREAVKRVAEAAAGAGLSRDVHRVVMKACSASRKHAIRRARSTADQRSVSTSNQSTAGNVA-VCHDSYQG-----CTAGGGDGCPTSGSLSDTDPFAREFENALGTID-VAESVKVQLVVAAEG 532
[Close]
BLAST of mRNA_H-elongata_contig17797.4688.1 vs. uniprot
Match: UPI0018D747F4 (L-seryl-tRNA(Sec) kinase-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D747F4)

HSP 1 Score: 95.1 bits (235), Expect = 2.610e-17
Identity = 63/198 (31.82%), Postives = 98/198 (49.49%), Query Frame = 1 
Query:  691 VVLADDNMHFRSMRHDVLRLARKYGCGYVQVYFPTEVEVAFRRNAARVNTVPKAVIRKMAASIQPPDPQLCKWERYTMIVETPTYHEQSDGDVSGFVANTHVEADTPLACHFGDNSAGNSVAVTFSLFWQIVARAAEDPVPSLLSVSLSSAPEQEEARKATRVSILHQLDLELREAVNRIADKASKASL-TRGTFRAV 1281
            V+  DDNM++RSMRH+  ++A+KY  G+ QVY     EVA  RN+ R + +P+  IR+MA+ I+ PD Q+  WE+ ++ +++    E S+ +                               T S  W ++ +A  DPV   L + + +A E+E +R A   SILHQ D  LR+ V      A    L TR   +A+
Sbjct:  167 VLFIDDNMYYRSMRHEYYQVAKKYSVGFCQVYLRCNTEVAVARNSQRRHGIPEETIRRMASRIEAPDRQVASWEKQSIHIDS----EDSEKET------------------------------TLSAIWDLITKALLDPV---LPLEVVNAEEKEASRAACASSILHQADQSLRKCVTEAVTSAKDGGLLTRAELKAL 327
[Close]
BLAST of mRNA_H-elongata_contig17797.4688.1 vs. uniprot
Match: A0A6P8HCU4_ACTTE (L-seryl-tRNA(Sec) kinase-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HCU4_ACTTE)

HSP 1 Score: 93.2 bits (230), Expect = 8.230e-17
Identity = 64/190 (33.68%), Postives = 92/190 (48.42%), Query Frame = 1 
Query:  682 SLHVVLADDNMHFRSMRHDVLRLARKYGCGYVQVYFPTEVEVAFRRNAARVNTVPKAVIRKMAASIQPPDPQLCKWERYTMIVETPTYHEQSDGDVSGFVANTHVEADTPLACHFGDNSAGNSVAVTFSLFWQIVARAAEDPVPSLLSVSLSSAPEQEEARKATRVSILHQLDLELREAVNRIADKASKA 1251
            + H++L DDNM++RSMRH+   LARKYG GY+QV+    V  A  RN+ R N + +  I  MA  ++PP P    WE Y+M+++                                 N  G +  +T  L   ++A AA +PV  L      +  E+EEAR A   S++HQ D  LR+    I DK +KA
Sbjct:  155 TAHILLVDDNMYYRSMRHEYFLLARKYGLGYMQVFIECPVNTALDRNSQRGNPIDRNTIVTMATKLEPPSPDKYPWEEYSMVLDA--------------------------------NDDGTNSYLTRLL--SLMAEAALNPVQPLPE---ENKEEKEEARAANLTSMMHQADQTLRKV---ITDKMAKA 304
[Close]
BLAST of mRNA_H-elongata_contig17797.4688.1 vs. uniprot
Match: L8HFD1_ACACA (Chromatin associated protein kti12 protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HFD1_ACACA)

HSP 1 Score: 79.0 bits (193), Expect = 4.140e-12
Identity = 42/114 (36.84%), Postives = 62/114 (54.39%), Query Frame = 1 
Query:  637 IEANRDQSEEIGCDASLHVVLADDNMHFRSMRHDVLRLARKYGCGYVQVYFPTEVEVAFRRNAARVNT--VPKAVIRKMAASIQPPDPQLCKWERYTMIVETPTYHEQSDGDVS 972
            I+ +R  +  IG   S  +++ DDNM++RSMRH    LA+K+   Y QVY    + VA  RNA R  +  VP  +I +M A  + P P    WER+T +V      E+ +GD +
Sbjct:   88 IDESRQTNNSIGTCVSRRLIVVDDNMYYRSMRHQCYLLAKKHEVPYGQVYVEVPLAVALARNARRTGSARVPDEIIERMHARFEAPQPADHGWERHTCVVHPQREEEEPEGDAA 201
[Close]
BLAST of mRNA_H-elongata_contig17797.4688.1 vs. uniprot
Match: UPI001F03B16C (L-seryl-tRNA(Sec) kinase-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F03B16C)

HSP 1 Score: 78.6 bits (192), Expect = 7.210e-12
Identity = 39/112 (34.82%), Postives = 62/112 (55.36%), Query Frame = 1 
Query:  682 SLHVVLADDNMHFRSMRHDVLRLARKYGCGYVQVYFPTEVEVAFRRNAARVNTVPKAVIRKMAASIQPPDPQLCKWERYTMIVETPTYH-EQSDGDVSGFVANTHVEADTPL 1014
            + HV++ DDNM +RSMRH+  +LARK    Y Q+YF   VEVA  RN  R + V +  + ++  + + P P+   WE+Y++ ++T     E    DV   + N  +   +PL
Sbjct:  111 AFHVIIIDDNMFYRSMRHEYYQLARKVSFSYSQIYFHCPVEVALMRNEKRSSPVKEETVFRIFNNFEKPTPKKLAWEKYSLFIDTTNIEFEDKWEDVFELLHNAAINKPSPL 222
[Close]
BLAST of mRNA_H-elongata_contig17797.4688.1 vs. uniprot
Match: A0A835Y232_9CHLO (Uncharacterized protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835Y232_9CHLO)

HSP 1 Score: 77.0 bits (188), Expect = 3.100e-11
Identity = 35/90 (38.89%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:  679 ASLHVVLADDNMHFRSMRHDVLRLARKYGCGYVQVYFPTEVEVAFRRNAAR--VNTVPKAVIRKMAASIQPPDPQLCKWERYTMIVETPT 942
            A   +++ADDN H RSMRH++ + AR +G  ++Q++ P  ++ A  RN  R  V  VP+  +R+MAA+++PP P+   WE  T+ +  PT
Sbjct:   73 APYTLIIADDNNHLRSMRHELFQAARDHGAAFLQLHVPVSLQDALARNRRRSGVEAVPEEALRRMAAALEPPSPERFAWEAATLALPGPT 162
[Close]
BLAST of mRNA_H-elongata_contig17797.4688.1 vs. uniprot
Match: A0A7K4JS66_GEOCA (PSTK kinase (Fragment) n=1 Tax=Geococcyx californianus TaxID=8947 RepID=A0A7K4JS66_GEOCA)

HSP 1 Score: 73.9 bits (180), Expect = 8.510e-11
Identity = 34/107 (31.78%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:  691 VVLADDNMHFRSMRHDVLRLARKYGCGYVQVYFPTEVEVAFRRNAARVNTVPKAVIRKMAASIQPPDPQLCKWERYTMIVETPTYHEQSDGDVSGFVANTHVEADTP 1011
            +++ DDN ++RSMRH+V +LARKY   + Q++    +E   +RN  R + VP   I  MA  I+ PDP+   WER+++++ +     + D  +   +A      + P
Sbjct:   66 LLILDDNFYYRSMRHEVYQLARKYSLSFCQIFLECPLECCLQRNRQRSHPVPDETICLMATKIEMPDPKKNTWERHSLVLRSSEGAVEDDRQIMALLATALENPERP 172
[Close]
BLAST of mRNA_H-elongata_contig17797.4688.1 vs. uniprot
Match: A0A8J1T886_OWEFU (Ofus.G013923 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1T886_OWEFU)

HSP 1 Score: 74.7 bits (182), Expect = 1.080e-10
Identity = 51/182 (28.02%), Postives = 85/182 (46.70%), Query Frame = 1 
Query:  676 DASLHVVLADDNMHFRSMRHDVLRLARKYGCGYVQVYFPTEVEVAFRRNAARVNTVPKAVIRKMAASIQPPDPQLCKWERYTMIVETPTYHEQSDGDVSGFVANTHVEADTPLACHFGDNSAGNSVAVTFSLFWQIVARAAEDPVPSLLSVSLSSAPEQEEARKATRVSILHQLDLELREAV 1221
            D +  V++ DDNM++RSMR+   +LA++Y  G+VQ Y     ++A  RN AR   V K VI  M   ++PP+P L KWE  + ++++                      +T +  HF             S     +    ++P+P  +  ++    E+EE+R     + LHQ+D  LR+ V
Sbjct:  139 DVNNVVLIIDDNMYYRSMRYTYFQLAKRYSTGFVQFYIKCPTDLALERNQARGEPVDKDVILTMDTRLEPPNPDLNKWEENSYVIDS---------------------METDMNAHF-------------SFVIDKIEHCLKNPIPLEIEENVE---EKEESRVICSKNTLHQIDQILRKLV 283
[Close]
BLAST of mRNA_H-elongata_contig17797.4688.1 vs. uniprot
Match: A0A6J8F0S9_MYTCO (PSTK n=3 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8F0S9_MYTCO)

HSP 1 Score: 72.4 bits (176), Expect = 4.090e-10
Identity = 35/108 (32.41%), Postives = 55/108 (50.93%), Query Frame = 1 
Query:  691 VVLADDNMHFRSMRHDVLRLARKYGCGYVQVYFPTEVEVAFRRNAARVNTVPKAVIRKMAASIQPPDPQLCKWERYTMIVETPTYHEQSDGDVSGFVANTHVEADTPL 1014
            V++ DDNM++ SMRH   ++ARKY CG+ Q+Y    V+ A  RN  R   +   VI  MA  I+PP+     WE  ++++ T +  E     +   V    +    P+
Sbjct:   98 VIVLDDNMYYTSMRHKYFQIARKYTCGFCQLYLACNVQTALERNVERNQPITDDVIVAMATKIEPPNTHYNSWETNSIVINTDSEIESQLPRIMSLVKTAMLNPVQPI 205
[Close]
BLAST of mRNA_H-elongata_contig17797.4688.1 vs. uniprot
Match: UPI001019EA84 (L-seryl-tRNA(Sec) kinase n=1 Tax=Eptesicus fuscus TaxID=29078 RepID=UPI001019EA84)

HSP 1 Score: 70.1 bits (170), Expect = 2.260e-9
Identity = 32/110 (29.09%), Postives = 60/110 (54.55%), Query Frame = 1 
Query:  691 VVLADDNMHFRSMRHDVLRLARKYGCGYVQVYFPTEVEVAFRRNAARVNTVPKAVIRKMAASIQPPDPQLCKWERYTMIVETPTYHEQSDGDVSGFVANTHVEADTPLAC 1020
            +++ DDN ++RSMRH+V +LAR+Y  G+ Q++    +E   +RN  R   +P   IR M   ++ P+PQ   WE  ++ V +     ++  +++G +       + P+ C
Sbjct:   96 LLVLDDNFYYRSMRHEVYQLARRYSLGFCQLFLDCPLETCLQRNGRRPGALPAETIRLMRRRMEEPNPQKNAWEHNSLTVRSSAGSAEASPELTGLLL---AALENPVTC 202
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17797.4688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5JCU0_9PHAE3.420e-5434.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0018D747F42.610e-1731.82L-seryl-tRNA(Sec) kinase-like n=1 Tax=Patiria mini... [more]
A0A6P8HCU4_ACTTE8.230e-1733.68L-seryl-tRNA(Sec) kinase-like n=1 Tax=Actinia tene... [more]
L8HFD1_ACACA4.140e-1236.84Chromatin associated protein kti12 protein n=1 Tax... [more]
UPI001F03B16C7.210e-1234.82L-seryl-tRNA(Sec) kinase-like n=1 Tax=Xenia sp. Ca... [more]
A0A835Y232_9CHLO3.100e-1138.89Uncharacterized protein n=1 Tax=Edaphochlamys deba... [more]
A0A7K4JS66_GEOCA8.510e-1131.78PSTK kinase (Fragment) n=1 Tax=Geococcyx californi... [more]
A0A8J1T886_OWEFU1.080e-1028.02Ofus.G013923 protein n=1 Tax=Owenia fusiformis Tax... [more]
A0A6J8F0S9_MYTCO4.090e-1032.41PSTK n=3 Tax=Mytilus coruscus TaxID=42192 RepID=A0... [more]
UPI001019EA842.260e-929.09L-seryl-tRNA(Sec) kinase n=1 Tax=Eptesicus fuscus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17797contigH-elongata_contig17797:645..5094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue6.7e-13
Seed eggNOG ortholog157072.XP_008879884.1
Preferred namePSTK
KEGG rclassRC00002,RC00017
KEGG koko:K10837
KEGG ReactionR08223
KEGG Pathwayko00450,ko00970,map00450,map00970
GOsGO:0000049,GO:0001514,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006412,GO:0006414,GO:0006417,GO:0006451,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019222,GO:0019538,GO:0031323,GO:0031326,GO:0032268,GO:0034248,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0097159,GO:0098620,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000112
EggNOG free text desc.5-carbamoylmethyl uridine residue modification
EggNOG OGsCOG4088@1,KOG4622@2759
EC2.7.1.164
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionL-seryl-tRNA(Sec) kinase
Ec32 orthologEc-03_001030.1
Exons6
Model size1980
Cds size1542
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17797.4688.1prot_H-elongata_contig17797.4688.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17797 1753..4719 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930028.687444-UTR-H-elongata_contig17797:644..7041622930028.687444-UTR-H-elongata_contig17797:644..704Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17797 645..704 +
1691679252.6660862-UTR-H-elongata_contig17797:644..7041691679252.6660862-UTR-H-elongata_contig17797:644..704Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17797 645..704 +
1622930028.7180355-UTR-H-elongata_contig17797:1749..17521622930028.7180355-UTR-H-elongata_contig17797:1749..1752Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17797 1750..1752 +
1691679252.6787934-UTR-H-elongata_contig17797:1749..17521691679252.6787934-UTR-H-elongata_contig17797:1749..1752Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17797 1750..1752 +
1622930028.8160756-UTR-H-elongata_contig17797:4719..50941622930028.8160756-UTR-H-elongata_contig17797:4719..5094Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17797 4720..5094 +
1691679252.739536-UTR-H-elongata_contig17797:4719..50941691679252.739536-UTR-H-elongata_contig17797:4719..5094Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17797 4720..5094 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930028.732842-CDS-H-elongata_contig17797:1752..24491622930028.732842-CDS-H-elongata_contig17797:1752..2449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17797 1753..2449 +
1691679252.688084-CDS-H-elongata_contig17797:1752..24491691679252.688084-CDS-H-elongata_contig17797:1752..2449Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17797 1753..2449 +
1622930028.7495499-CDS-H-elongata_contig17797:3078..31701622930028.7495499-CDS-H-elongata_contig17797:3078..3170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17797 3079..3170 +
1691679252.6991532-CDS-H-elongata_contig17797:3078..31701691679252.6991532-CDS-H-elongata_contig17797:3078..3170Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17797 3079..3170 +
1622930028.7766433-CDS-H-elongata_contig17797:3437..37371622930028.7766433-CDS-H-elongata_contig17797:3437..3737Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17797 3438..3737 +
1691679252.7121437-CDS-H-elongata_contig17797:3437..37371691679252.7121437-CDS-H-elongata_contig17797:3437..3737Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17797 3438..3737 +
1622930028.7881856-CDS-H-elongata_contig17797:3995..40581622930028.7881856-CDS-H-elongata_contig17797:3995..4058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17797 3996..4058 +
1691679252.7216349-CDS-H-elongata_contig17797:3995..40581691679252.7216349-CDS-H-elongata_contig17797:3995..4058Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17797 3996..4058 +
1622930028.8023932-CDS-H-elongata_contig17797:4329..47191622930028.8023932-CDS-H-elongata_contig17797:4329..4719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17797 4330..4719 +
1691679252.730332-CDS-H-elongata_contig17797:4329..47191691679252.730332-CDS-H-elongata_contig17797:4329..4719Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17797 4330..4719 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17797.4688.1

>prot_H-elongata_contig17797.4688.1 ID=prot_H-elongata_contig17797.4688.1|Name=mRNA_H-elongata_contig17797.4688.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=514bp
MRCVLVSCCGIPASGKTTFCRGVIISAASYDPHGRSQSKPCLKRSSTDAA
MATMISRVQTPIRVSHVCFDEHIDLARRRRNSRSRLPVEGGGYAHDVVAG
EGRESDGQENAGSEGSVRGTGSAGKVYNDVPREKDHSYAVESREGGAECW
HEGRRKAMAEVEGLAAGTRVAEPSSVYISGEAGVDTPSCPGIEANRDQSE
EIGCDASLHVVLADDNMHFRSMRHDVLRLARKYGCGYVQVYFPTEVEVAF
RRNAARVNTVPKAVIRKMAASIQPPDPQLCKWERYTMIVETPTYHEQSDG
DVSGFVANTHVEADTPLACHFGDNSAGNSVAVTFSLFWQIVARAAEDPVP
SLLSVSLSSAPEQEEARKATRVSILHQLDLELREAVNRIADKASKASLTR
GTFRAVMDACTAARRTSMRSARRTKEDENDARNTHTATEISRIQNDLTEG
SRGQDSTLENCDEKPTTHARSPRGIFASEFAQGIGVVDGLGASNRVALVD
AAKGFGTLNPGEA*
back to top

mRNA from alignment at H-elongata_contig17797:645..5094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17797.4688.1 ID=mRNA_H-elongata_contig17797.4688.1|Name=mRNA_H-elongata_contig17797.4688.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4450bp|location=Sequence derived from alignment at H-elongata_contig17797:645..5094+ (Himanthalia elongata Himel1 dioecious)
CAACAATTTAGGGGATATTACGTTAGGCTTGCGAGCACAGCTGAAGAAAT
TCACCATTAGGTATGCATTGATTTGACTTAACAGTAGAGAGGAGCAATGG
GAATGGACCGTTTCCAATTGCAGCTATGGTAGGGTTATTAAATATGTACG
GACTTTTGTCGTGTGACGATTTTGTGCTCAAAGGTAGTAATGTACATATT
CGAACCCGACGATAGTTGGTCCCCCGGATGGTACCCCTCACAGCGCTAAG
AAGGTGTGGATGTTCGGAGGATTGGAATGAGTTCAAGGTTTTTTCATTAA
AATATGTACGGACTTTTGTCCGCTTGCTTCGCACCCCTGTGTGACCTTCA
GCTGCTTTTATTTTAGGAGATCCCGCCTTTACCTGCTTTCTCGCTGTCCT
AGGCGTTGTGATATATTTCGGGCCGAAATTGCAAGCTGCCCTCGACGACG
GAAATGAGTCGGTGAACTTATTGGACGGGCATTTATGTCTGAAATATCTT
CAGACAAATCTCCCCGTTGTTTCCAACGCCTTGGGAAACATGCTGCTTTC
GATTACTCAGTAAAGCGAAGTAATTACAGTAAATTTTTATTTAAAAAAAC
ATGAACTCATTCCAACCCTCCGACCATCGACACCTTCTTAGCGCCGTGAG
GAATGCATTCCAGGGGACCAACTATCGTCAGGTTCGAATGTGTACAATAC
TACCTTTGCGCACAAAATCGTCACACGTGAAAGATCGTGTTCCCCAATAG
TAAGTTCATCGGGTCAACGGAATAATTGTCAAGGATCCCATTATTATCCC
ATACACTTTACATTATTCGTCATGTGAGGACGCCAAACCAACGCATAGAG
CGTGGAATCTATAAGGAAAGGGGGTGCGGGAGAGAGAGAGAGGGGGGGGG
GGGATAATTTGTAATACATTATTAATGCTGCAGTTTCGAGTTCTATAGAC
TAATAGTTGATAGTCGAAGCGCCGAACAACCGTCAGTATCCGTTGTTAGA
GGGTTAAGAGCTCTGAAGTGTTCCCCAGCACCCTCAAGGAGAAAGAAGCT
GACTGGTGCTACGGCCAGATTTACACCCGTTCTTCACGTTTCCCTCTTGG
CGTAGGACATGCGATGTGTGCTGGTCTCGTGCTGCGGGATCCCCGCGTCG
GGTAAGACCACCTTCTGTCGGGGAGTCATCATTTCCGCCGCGTCTTATGA
CCCGCATGGCCGCTCCCAGAGCAAGCCTTGCCTCAAGCGGTCGTCCACGG
ACGCGGCGATGGCAACGATGATTTCGCGAGTGCAAACTCCCATCAGGGTC
AGCCACGTTTGCTTCGATGAGCACATCGATCTCGCGCGACGCCGGCGGAA
TTCGAGGTCCCGGTTACCCGTAGAAGGTGGGGGGTACGCTCATGATGTCG
TAGCTGGCGAGGGTCGGGAGAGCGACGGTCAGGAAAATGCTGGATCAGAG
GGCTCCGTGAGAGGTACTGGCTCGGCGGGAAAAGTCTACAACGATGTGCC
ACGCGAGAAGGATCATTCTTACGCTGTCGAGAGTCGAGAGGGTGGTGCCG
AGTGTTGGCACGAAGGCCGACGTAAAGCCATGGCCGAGGTGGAGGGTCTG
GCCGCGGGAACTAGGGTAGCCGAGCCCTCATCAGTATACATCAGTGGAGA
AGCAGGCGTGGATACGCCGTCCTGTCCTGGGATTGAGGCAAATCGAGATC
AGAGTGAGGAAATTGGTTGCGATGCGTCGTTGCACGTGGTCCTCGCGGAT
GACAATATGCATTTCAGGAGCATGCGACACGACGTGCTGCGCTTGGCGAG
AAAATGTGAGTCGTGTCACATTCCCTGGAAGGTAAAGCGGGTTCACGCGA
TTTTTGAGGTGTTGGGGTTGTGTGACGAGATTGTGTACCATCACGGTCTG
ACCGCGCACCCTCTGGCTTGAAACATGACATGTGTTTGGAATACGAGCAA
GTAAGCGGGTGCTGAAGGCTGACGCTTCATAGCCTTCGGCCTTTATTGGC
TGCCCACTAGTGACAAAGGGTGGTTGCGATTTTTCTCCCCACAAATCTTA
AAGGTTTAGTTTTTCATTAAAAAACATATAAACTAATTAAAACCCTTCGA
CCATTCACGAGTTTTTAGCATCATGAAAAGTGCACCAGATTTCGTGTCTG
AACGTCTCCGTGGAAAAAATCACGTGTGGTACGAGTATATATACGAAATG
TCAGTATACTCCCAAGCGAGAAGTCACAATCCCATTCATGGCAGCAGAAT
ACGTGGATGCAGTGGTTTAACGGTCTCGACCCCGAAAACAGCTTTTTTCA
AGAACAATAATAACCAATGAGCTATACGAGTAGGCTCTCACTGGTAGCAC
ATGTAGTTGATAAGTAATGATAACTGCTTTCATTCCATCTCCCAGCGAGT
CTTTACCGTTTTATTTTCACATCCCTTTTTTCAGATGGATGTGGCTACGT
CCAGGTGTACTTCCCTACGGAAGTTGAAGTTGCTTTTAGAAGAAATGCAG
CGAGGGTCAACACAGTTCCGAAGGCGGTGAGTGGGTCAAGTTTTGCACTA
CGCTGCCGGGCTAGATCACAATAGCGTCGTTCTTCCCGTGCTCCCTTCGC
TCGGATGGAATCCCCATTCTCGAACATAATTCTTAGTGCGATATGAGTTG
CCTTTCGTCCACTTTATTTCGATAGCGCGATGTGCCCGTGGTCCGTCACC
GATCGCAAGCTCTGGGATATACAACTCCATCGATACCACACACCTTCGAT
CTAGTTAGCCCCCATAATCCTCTGTATGCTCTCGGTGGAACAGGTCATCC
GGAAAATGGCTGCCAGCATCCAACCACCCGATCCTCAGCTGTGCAAATGG
GAACGCTACACCATGATCGTCGAAACTCCGACATACCATGAGCAGAGTGA
CGGCGACGTTTCTGGATTCGTTGCGAATACGCACGTGGAAGCGGACACGC
CGCTTGCTTGCCATTTCGGCGATAACTCGGCGGGGAACAGCGTCGCTGTG
ACGTTCTCCCTGTTTTGGCAAATAGTCGCCAGAGCAGCAGAAGATCCTGT
GCCTTCGTTGTTGTCCGTCTCGCTTTCCTCAGCCCCAGAGCAGGTGTGTC
GATACGACCGTAGTGGACTGATCACATAACGGTTCGCCTCACTGCGTGTA
AGGTTAGCTCCCTGCGTTTGTTGTCGGGGACATGTGAGCCCCACGAACAT
CAGGTGACCGGAATCTCCATCAGAGTGCACGATCTGCTGTAGTCGGAGTA
CCCCAGCTATAGCGTCCTCGTGTGATGACAAGTCTTCAGCACAAAACACT
CCGATAGCGTCTGCACAAACTGGACGGATTTTGAATCGCGTTTCCCGGTA
GGAGGAGGCTCGAAAAGCAACTAGGGTCAGCATCTTGCATCAGCTCGATC
TGGAGCTAAGAGAGGTATATTATACACTGTACGCAGCGAGGATGATGGCA
TCATGACTTTTCGTGCGTAATACGTCCCGCTCTTGCCGCAGCTGCGCAAT
TTGCAGTCGACGATGAATACTAACCGAATATAATATTTACCAGCTCAAGA
TTTGATCGCTTTCAAAGTGCTCGTATTCAAGGCACAATAATATATGTTTT
TCACATCTGATAGCTAGCTTACCTTTGGGAGTGACATGTCAAGATGCCCG
AATCGCCCCGCCAATCCCCCCCTCCCGCCCCTCAGGCGGTAAATAGGATT
GCAGACAAGGCCAGCAAAGCATCACTTACCCGTGGAACATTTCGGGCCGT
GATGGACGCCTGCACCGCCGCGAGAAGAACCTCTATGCGAAGTGCAAGGA
GGACAAAGGAGGACGAAAATGATGCCCGGAATACTCATACAGCGACCGAG
ATCAGTCGAATACAGAACGATCTTACCGAGGGCAGTCGTGGTCAGGATTC
TACGCTAGAAAATTGCGACGAAAAACCCACCACACATGCTCGTTCCCCTC
GTGGAATTTTTGCAAGTGAGTTTGCACAAGGAATTGGAGTCGTAGATGGA
TTGGGAGCGTCCAATCGAGTAGCGCTTGTTGACGCAGCCAAGGGGTTCGG
CACCCTGAACCCAGGAGAAGCCTGAAATTTGCTTGGAATGTGGGATATTC
TTCATAATCACTGGTGGGTTTTTTTGCGCTATCAAGGCGCACAGTCAAAC
AAACTTAGCCTGGAACGAAACATCGTTCGAGATCTCGGTATATCCGTTCA
AATAAAAAAATGCGGTTGCCCTTGTGCAATCCTGTAATCGCAAAGCGTGT
CTGTAATTGCGTATTGCTTTTTCTTGCCAAGTTTTTGTTGGTGTACGACC
AGCGTTAGATGCCGTGCTATCGGCGCGGCAACCCTTGTCATCGTTCGAGT
GTGAAGTTTAAATAAAGTCGACTTTGGCCCTTTTCCCAGACGTCGGATCT
AGGTCGCTCGAGTCTGGATTGGTTGCCAGACTTATACACCTTTTAAGGCC
back to top

Coding sequence (CDS) from alignment at H-elongata_contig17797:645..5094+

>mRNA_H-elongata_contig17797.4688.1 ID=mRNA_H-elongata_contig17797.4688.1|Name=mRNA_H-elongata_contig17797.4688.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=3084bp|location=Sequence derived from alignment at H-elongata_contig17797:645..5094+ (Himanthalia elongata Himel1 dioecious)
ATGCGATGTGTGCTGGTCTCGTGCTGCGGGATCCCCGCGTCGGGTAAGAC
CACCTTCTGTCGGGGAGTCATCATTTCCGCCGCGTCTTATGACCCGCATG
GCCGCTCCCAGAGCAAGCCTTGCCTCAAGCGGTCGTCCACGGACGCGGCG
ATGGCAACGATGATTTCGCGAGTGCAAACTCCCATCAGGGTCAGCCACGT
TTGCTTCGATGAGCACATCGATCTCGCGCGACGCCGGCGGAATTCGAGGT
CCCGGTTACCCGTAGAAGGTGGGGGGTACGCTCATGATGTCGTAGCTGGC
GAGGGTCGGGAGAGCGACGGTCAGGAAAATGCTGGATCAGAGGGCTCCGT
GAGAGGTACTGGCTCGGCGGGAAAAGTCTACAACGATGTGCCACGCGAGA
AGGATCATTCTTACGCTGTCGAGAGTCGAGAGGGTGGTGCCGAGTGTTGG
CACGAAGGCCGACGTAAAGCCATGGCCGAGGTGGAGGGTCTGGCCGCGGG
AACTAGGGTAGCCGAGCCCTCATCAGTATACATCAGTGGAGAAGCAGGCG
TGGATACGCCGTCCTGTCCTGGGATTGAGGCAAATCGAGATCAGAGTGAG
GAAATTGGTTGCGATGCGTCGTTGCACGTGGTCCTCGCGGATGACAATAT
GCATTTCAGGAGCATGCGACACGACGTGCTGCGCTTGGCGAGAAAATATG
CGATGTGTGCTGGTCTCGTGCTGCGGGATCCCCGCGTCGGGTAAGACCAC
CTTCTGTCGGGGAGTCATCATTTCCGCCGCGTCTTATGACCCGCATGGCC
GCTCCCAGAGCAAGCCTTGCCTCAAGCGGTCGTCCACGGACGCGGCGATG
GCAACGATGATTTCGCGAGTGCAAACTCCCATCAGGGTCAGCCACGTTTG
CTTCGATGAGCACATCGATCTCGCGCGACGCCGGCGGAATTCGAGGTCCC
GGTTACCCGTAGAAGGTGGGGGGTACGCTCATGATGTCGTAGCTGGCGAG
GGTCGGGAGAGCGACGGTCAGGAAAATGCTGGATCAGAGGGCTCCGTGAG
AGGTACTGGCTCGGCGGGAAAAGTCTACAACGATGTGCCACGCGAGAAGG
ATCATTCTTACGCTGTCGAGAGTCGAGAGGGTGGTGCCGAGTGTTGGCAC
GAAGGCCGACGTAAAGCCATGGCCGAGGTGGAGGGTCTGGCCGCGGGAAC
TAGGGTAGCCGAGCCCTCATCAGTATACATCAGTGGAGAAGCAGGCGTGG
ATACGCCGTCCTGTCCTGGGATTGAGGCAAATCGAGATCAGAGTGAGGAA
ATTGGTTGCGATGCGTCGTTGCACGTGGTCCTCGCGGATGACAATATGCA
TTTCAGGAGCATGCGACACGACGTGCTGCGCTTGGCGAGAAAATATGGAT
GTGGCTACGTCCAGGTGTACTTCCCTACGGAAGTTGAAGTTGCTTTTAGA
AGAAATGCAGCGAGGGTCAACACAGTTCCGAAGGCGATGGATGTGGCTAC
GTCCAGGTGTACTTCCCTACGGAAGTTGAAGTTGCTTTTAGAAGAAATGC
AGCGAGGGTCAACACAGTTCCGAAGGCGGTCATCCGGAAAATGGCTGCCA
GCATCCAACCACCCGATCCTCAGCTGTGCAAATGGGAACGCTACACCATG
ATCGTCGAAACTCCGACATACCATGAGCAGAGTGACGGCGACGTTTCTGG
ATTCGTTGCGAATACGCACGTGGAAGCGGACACGCCGCTTGCTTGCCATT
TCGGCGATAACTCGGCGGGGAACAGCGTCGCTGTGACGTTCTCCCTGTTT
TGGCAAATAGTCGCCAGAGCAGCAGAAGATCCTGTGCCTTCGTTGTTGTC
CGTCTCGCTTTCCTCAGCCCCAGAGCAGGTCATCCGGAAAATGGCTGCCA
GCATCCAACCACCCGATCCTCAGCTGTGCAAATGGGAACGCTACACCATG
ATCGTCGAAACTCCGACATACCATGAGCAGAGTGACGGCGACGTTTCTGG
ATTCGTTGCGAATACGCACGTGGAAGCGGACACGCCGCTTGCTTGCCATT
TCGGCGATAACTCGGCGGGGAACAGCGTCGCTGTGACGTTCTCCCTGTTT
TGGCAAATAGTCGCCAGAGCAGCAGAAGATCCTGTGCCTTCGTTGTTGTC
CGTCTCGCTTTCCTCAGCCCCAGAGCAGGAGGAGGCTCGAAAAGCAACTA
GGGTCAGCATCTTGCATCAGCTCGATCTGGAGCTAAGAGAGGAGGAGGCT
CGAAAAGCAACTAGGGTCAGCATCTTGCATCAGCTCGATCTGGAGCTAAG
AGAGGCGGTAAATAGGATTGCAGACAAGGCCAGCAAAGCATCACTTACCC
GTGGAACATTTCGGGCCGTGATGGACGCCTGCACCGCCGCGAGAAGAACC
TCTATGCGAAGTGCAAGGAGGACAAAGGAGGACGAAAATGATGCCCGGAA
TACTCATACAGCGACCGAGATCAGTCGAATACAGAACGATCTTACCGAGG
GCAGTCGTGGTCAGGATTCTACGCTAGAAAATTGCGACGAAAAACCCACC
ACACATGCTCGTTCCCCTCGTGGAATTTTTGCAAGTGAGTTTGCACAAGG
AATTGGAGTCGTAGATGGATTGGGAGCGTCCAATCGAGTAGCGCTTGTTG
ACGCAGCCAAGGGGTTCGGCACCCTGAACCCAGGAGAAGCCTGAGCGGTA
AATAGGATTGCAGACAAGGCCAGCAAAGCATCACTTACCCGTGGAACATT
TCGGGCCGTGATGGACGCCTGCACCGCCGCGAGAAGAACCTCTATGCGAA
GTGCAAGGAGGACAAAGGAGGACGAAAATGATGCCCGGAATACTCATACA
GCGACCGAGATCAGTCGAATACAGAACGATCTTACCGAGGGCAGTCGTGG
TCAGGATTCTACGCTAGAAAATTGCGACGAAAAACCCACCACACATGCTC
GTTCCCCTCGTGGAATTTTTGCAAGTGAGTTTGCACAAGGAATTGGAGTC
GTAGATGGATTGGGAGCGTCCAATCGAGTAGCGCTTGTTGACGCAGCCAA
GGGGTTCGGCACCCTGAACCCAGGAGAAGCCTGA
back to top