mRNA_H-elongata_contig177925.4686.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177925.4686.1
Unique NamemRNA_H-elongata_contig177925.4686.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: D7FX19_ECTSI (Er lumen protein retaining receptor 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX19_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 7.600e-23
Identity = 49/59 (83.05%), Postives = 52/59 (88.14%), Query Frame = 1
Query:    1 VTHSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYYAI 177
            VTHSTFALGLARVLDMVFWMFSY+ELT   GS SVG+ VL SQFVH+VIM DFFYYYAI
Sbjct:  217 VTHSTFALGLARVLDMVFWMFSYKELT-HAGSNSVGMFVLFSQFVHVVIMGDFFYYYAI 274          
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: A0A836CR66_9STRA (Er lumen protein retaining receptor 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CR66_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.590e-19
Identity = 39/59 (66.10%), Postives = 49/59 (83.05%), Query Frame = 1
Query:    1 VTHSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYYAI 177
            V+HS FALG ARVLDM+FW++SY EL+   GS+SVG++VL +QF+HI IM DFFYYY I
Sbjct:  220 VSHSVFALGFARVLDMIFWLYSYHELSDAAGSKSVGMLVLATQFIHIAIMGDFFYYYLI 278          
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: A0A835ZJ22_9STRA (Er lumen protein retaining receptor 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ22_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.590e-19
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 1
Query:    1 VTHSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYYAI 177
            V+HS FALG ARVLDMVFW++SY EL+   GS+SVG++VL +QF+HI IM DFFYYY I
Sbjct:  220 VSHSVFALGFARVLDMVFWLYSYHELSDAAGSKSVGMLVLATQFIHIAIMGDFFYYYFI 278          
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: A0A7S2GHT0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GHT0_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.780e-14
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    1 VTHSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYY 171
            V+HS FALG ARV++  FWM S+ EL +  GS+ VG +VLLSQF+H+ +M DFFY+Y
Sbjct:  213 VSHSVFALGFARVVESAFWMSSFHELHSGAGSQFVGWVVLLSQFIHVALMGDFFYFY 269          
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: A0A6V2QBA8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2QBA8_HETAK)

HSP 1 Score: 71.2 bits (173), Expect = 2.680e-13
Identity = 29/57 (50.88%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    1 VTHSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYY 171
            ++HS FALG ARVLD+VFW+ +Y EL  +G +   G+++L +QF+++ +M DFFYYY
Sbjct:  209 ISHSVFALGFARVLDLVFWLSTYSELAGKGSTNFSGMLILFTQFINVALMGDFFYYY 265          
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: A0A482SL71_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SL71_9ARCH)

HSP 1 Score: 67.4 bits (163), Expect = 3.970e-13
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    1 VTHSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYY 171
            + H+ FA+G +R+ +++FW+ S+REL    GSR  G IVL+SQ  H++IMADFFY+Y
Sbjct:   32 IGHTMFAVGASRLFELIFWLGSFRELADHTGSRMPGYIVLVSQIAHLLIMADFFYFY 88          
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: A0A7S3ZIY5_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZIY5_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.050e-12
Identity = 32/57 (56.14%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    1 VTHSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYY 171
            V H   ALGL+RV++M FWM S+ EL  + G+R VG++VL++Q VH+VIM DFFY+Y
Sbjct:  215 VGHFVAALGLSRVVEMGFWMNSFHELADRNGNRHVGVLVLVAQMVHLVIMGDFFYFY 271          
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: A0A7R9U936_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U936_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 3.700e-12
Identity = 32/55 (58.18%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    7 HSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYY 171
            H   ALGLAR+++M+FW  S+REL+    S  VGI VL++Q VHI+IM DFFYYY
Sbjct:  210 HFVSALGLARIIEMIFWSSSFRELSHSSNSTWVGIFVLVAQIVHILIMLDFFYYY 264          
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: A0A7S2H0H3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2H0H3_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.070e-11
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1
Query:    7 HSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYY 171
            H   ALG  RVL+  FW++SY EL +  GS+  G + +LSQFV +V+M DFFYYY
Sbjct:  290 HFVAALGFGRVLEFAFWIYSYHELASSNGSKLPGYLAILSQFVQLVLMLDFFYYY 344          
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Match: A0A7S2SFV5_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SFV5_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.310e-10
Identity = 27/55 (49.09%), Postives = 39/55 (70.91%), Query Frame = 1
Query:    7 HSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIMADFFYYY 171
            H   ALG  R++++ FW +S+ EL T GGS   GI+ LLSQF+ +++M DFF+YY
Sbjct:  288 HFVAALGFGRIMELCFWSYSFHELVTAGGSTLPGIVALLSQFMQLILMLDFFWYY 342          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177925.4686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FX19_ECTSI7.600e-2383.05Er lumen protein retaining receptor 1 n=2 Tax=Ecto... [more]
A0A836CR66_9STRA3.590e-1966.10Er lumen protein retaining receptor 1 n=1 Tax=Trib... [more]
A0A835ZJ22_9STRA3.590e-1967.80Er lumen protein retaining receptor 1 n=1 Tax=Trib... [more]
A0A7S2GHT0_9STRA3.780e-1457.89Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6V2QBA8_HETAK2.680e-1350.88Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A482SL71_9ARCH3.970e-1350.88Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S3ZIY5_9STRA1.050e-1256.14Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9U936_9STRA3.700e-1258.18Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2H0H3_9STRA5.070e-1152.73Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2SFV5_9STRA1.310e-1049.09Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177925contigH-elongata_contig177925:975..1151 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue5.1e-18
Seed eggNOG ortholog2880.D7FX19
KEGG koko:K10949
KEGG Pathwayko05110,map05110
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0012505,GO:0016020,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0098827
EggNOG free text desc.ER retention sequence binding
EggNOG OGsCOG5196@1,KOG3106@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categorysignal anchor
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930028.5483031-CDS-H-elongata_contig177925:974..11511622930028.5483031-CDS-H-elongata_contig177925:974..1151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177925 975..1151 -
1691679252.630812-CDS-H-elongata_contig177925:974..11511691679252.630812-CDS-H-elongata_contig177925:974..1151Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177925 975..1151 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177925.4686.1prot_H-elongata_contig177925.4686.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177925 975..1151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177925.4686.1

>prot_H-elongata_contig177925.4686.1 ID=prot_H-elongata_contig177925.4686.1|Name=mRNA_H-elongata_contig177925.4686.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
VTHSTFALGLARVLDMVFWMFSYRELTTQGGSRSVGIIVLLSQFVHIVIM
ADFFYYYAI
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mRNA from alignment at H-elongata_contig177925:975..1151-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177925.4686.1 ID=mRNA_H-elongata_contig177925.4686.1|Name=mRNA_H-elongata_contig177925.4686.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig177925:975..1151- (Himanthalia elongata Himel1 dioecious)
GTGACCCACTCTACCTTCGCCCTGGGCCTCGCGCGGGTGTTGGACATGGT ATTCTGGATGTTTAGCTACAGAGAGCTCACCACCCAGGGCGGGTCGAGGT CGGTGGGCATCATCGTGCTATTGTCGCAGTTCGTGCACATCGTCATCATG GCGGATTTCTTTTACTACTATGCGATC
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Coding sequence (CDS) from alignment at H-elongata_contig177925:975..1151-

>mRNA_H-elongata_contig177925.4686.1 ID=mRNA_H-elongata_contig177925.4686.1|Name=mRNA_H-elongata_contig177925.4686.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig177925:975..1151- (Himanthalia elongata Himel1 dioecious)
GTGACCCACTCTACCTTCGCCCTGGGCCTCGCGCGGGTGTTGGACATGGT
ATTCTGGATGTTTAGCTACAGAGAGCTCACCACCCAGGGCGGGTCGAGGT
CGGTGGGCATCATCGTGCTATTGTCGCAGTTCGTGCACATCGTCATCATG
GCGGATTTCTTTTACTACTATGCGATCGTGACCCACTCTACCTTCGCCCT
GGGCCTCGCGCGGGTGTTGGACATGGTATTCTGGATGTTTAGCTACAGAG
AGCTCACCACCCAGGGCGGGTCGAGGTCGGTGGGCATCATCGTGCTATTG
TCGCAGTTCGTGCACATCGTCATCATGGCGGATTTCTTTTACTACTATGC
GATC
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