mRNA_H-elongata_contig17790.4684.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17790.4684.1
Unique NamemRNA_H-elongata_contig17790.4684.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig17790.4684.1 vs. uniprot
Match: D7FLC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC4_ECTSI)

HSP 1 Score: 116 bits (291), Expect = 1.560e-23
Identity = 58/85 (68.24%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:    7 GDTLNFFDDPPPGNRV----PTSGATQTGGPPDGNGGEFNLEFIEFSSFQELLVFFGRTLTERYDTSREKQETIPSPMYMHNMDD 249
            GDTL+FFDDPP GN+V    P  GA        G+GG  NLE++EF +F ELLVFFGRTLTERYDTSRE+QETIPSPMYMHNMD+
Sbjct:  732 GDTLSFFDDPPQGNQVQHQLPVGGAA-------GHGGAMNLEYVEFPNFHELLVFFGRTLTERYDTSREEQETIPSPMYMHNMDE 809
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17790.4684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLC4_ECTSI1.560e-2368.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17790contigH-elongata_contig17790:4407..6796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_007620.2
Exons3
Model size1790
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17790.4684.1prot_H-elongata_contig17790.4684.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17790 5959..6796 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930028.4018893-UTR-H-elongata_contig17790:4406..59421622930028.4018893-UTR-H-elongata_contig17790:4406..5942Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17790 4407..5942 -
1691679252.5711527-UTR-H-elongata_contig17790:4406..59421691679252.5711527-UTR-H-elongata_contig17790:4406..5942Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17790 4407..5942 -
1622930028.4266396-UTR-H-elongata_contig17790:5956..59581622930028.4266396-UTR-H-elongata_contig17790:5956..5958Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17790 5957..5958 -
1691679252.5807474-UTR-H-elongata_contig17790:5956..59581691679252.5807474-UTR-H-elongata_contig17790:5956..5958Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig17790 5957..5958 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930028.4419274-CDS-H-elongata_contig17790:5958..60661622930028.4419274-CDS-H-elongata_contig17790:5958..6066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17790 5959..6066 -
1691679252.5907276-CDS-H-elongata_contig17790:5958..60661691679252.5907276-CDS-H-elongata_contig17790:5958..6066Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17790 5959..6066 -
1622930028.4609644-CDS-H-elongata_contig17790:6652..67961622930028.4609644-CDS-H-elongata_contig17790:6652..6796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17790 6653..6796 -
1691679252.6031818-CDS-H-elongata_contig17790:6652..67961691679252.6031818-CDS-H-elongata_contig17790:6652..6796Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17790 6653..6796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17790.4684.1

>prot_H-elongata_contig17790.4684.1 ID=prot_H-elongata_contig17790.4684.1|Name=mRNA_H-elongata_contig17790.4684.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
MQGDTLNFFDDPPPGNRVPTSGATQTGGPPDGNGGEFNLEFIEFSSFQEL
LVFFGRTLTERYDTSREKQETIPSPMYMHNMDD*
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mRNA from alignment at H-elongata_contig17790:4407..6796-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17790.4684.1 ID=mRNA_H-elongata_contig17790.4684.1|Name=mRNA_H-elongata_contig17790.4684.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2390bp|location=Sequence derived from alignment at H-elongata_contig17790:4407..6796- (Himanthalia elongata Himel1 dioecious)
ATGCAGGGGGACACTCTCAACTTCTTCGACGATCCTCCCCCGGGTAATCG
TGTCCCGACGTCGGGTGCAACCCAAACCGGAGGGCCGCCGGACGGTAACG
GAGGCGAATTCAACCTCGAGTTCATTGAATTCTCATCGTTTCAGGTGTGT
TTTGTTTTGTGTAATAATAGCAAATTGTTTGTTGTACGTGGTCCCTGTAC
TATAGACTCTACCTTATACCTTATACTTTATACAGGGTATTATACCTTAT
ATACTCTACCGGGTATTACACCTTTTTATATAGGGTATTATGTTTTATAC
TATGTTGGGTATCAAATCTGAATACAAGTAATATTATGTCAGTTACCGTA
AAGGAGGGGTCTCTACACGACGACGACGCTGATGCCTGGAGAATCAAGCG
ACGCCGTTCGGCGTTAGGTGGGTTGAAGCCCATTTATGCTTGGTTCCGAA
CAAGATGCAGTAAGTACATCGTGGCCGACCTGTGGTACTAAATATATGTA
TTCGATCGATAAAATGTGAAGAACACACACATAGACACAGCTAACACGGC
GACGATAAAAAAGACCAAAACCATTTTTTTTTTCGTGTTTTTTTTGCGTG
GTGTTCCTGTTGCAATAAAATTATCTCCATGGAGGCCATAACAGCACACG
AAACCTAACCTGCCTTGTGTTTCAAGTGATCGATCGATCGCTCCCCCCCC
GCCCTCCCCCAAACGTACGGCCCATGGTAGGAACTCCTGGTGTTCTTCGG
CCGAACACTGACGGAGCGCTACGACACCTCCCGAGAGAAGCAGGAGACCA
TTCCTTCCCCCATGTACATGCACAATATGGACGACTAACCTTATATGGTT
TGGTCTGGTTTGGTCTTGTCCGATGTGATCTGATGTGAGGTGGTGCTATC
TGATCTGATGTGAGGTGATGTGATCTGATCTGACGTGAAGTGGAGTGGAG
TGACGTGGGGTTGCGTGACGTGGAGTGGCTGTGTGGCGTGGCGTGGCTTG
AGGTTTGCGTAACGCACAGTGGCGTAGAGGGACACATGATGCACAGCGAG
TGCCCCGATTACGAGTACGGTTAAGGGCGCAAGTCTTACGTAGATGCCAC
TTCGAGACATCGCTTGGTTTCTCCAAGGGGGTTGGAGGGTTGCTGTGGTA
GTGCCGAGCAGGCTATGGCGCTACGATAATATACTGAGGGGGGGTGCGTT
CTGCGACCGTTCCACGGAACATTCCCCGGAAACTTCTGGGCGTAAGGTTG
TTGGCGGGCGGCCGTAACTCTTAAGGAGCGGACAGGTAGATCAGCATCGC
GGCGGAGCTTTTTCTCCTTCATCCCCTCATGTTTTGGTCGGTCTAGTCTT
TTGGTCGTGAGCCTCAAGCGACCTATTAACAGGGTCAAGATAATTTTGTT
AAGAAAAAGAGACGGAATTTGGGGGTGGGGGCGAAGAAGCCGCTGCTACC
GTTGATGCTGTGATATATTTCGATGCCCGCCGTGGCCGGCATTCAGGAGT
AAGGTGATGTAACCCTGCGCTGTTTCATGGTTTTCCCTTTTTGATGTGTT
TTCCTTCTTGATATTTTCTTCGTCCTTCGCTCGGGCGTAATGATTTTGGC
TGTTGTGGAAGGGAAGGGTGGTTAATAGGTAGGTTTAATAGGTATCAAGG
GAGTTGCATAGAACGATAATTTTCTCCCACTGTTAACGCGTTTTTTTTTG
TTCTATCGCGCCACGTCCCCGCCTCCTTTCGAGGGGACTGCTGGTTTCCT
CTTAATTTCTTTCCGCCGAGATTGAAGGGCAGGAGGCTTCGTCCGCAGCA
TCAGCAAAATCAGCCTAAACGAGTTGCAACGGCATACTTTTTAGCCTTTA
CGCACCCTGCTGTGCTTGGGGCTAACGTGGGAGAAGTTGGACAGGGGAAC
TGGGTAAAAGGGAAGAGACAAGTTGCCTGATGAGGTTGATGGTGTGCTGG
CAAGACACGGCAGTGATATGTTGAGGCAGGCACGCGTTGATGCCGCTTGT
AACAAACTGTAGGTGGTCGACAGAGACTGTTTAGATTCTTACTACTATAG
GAGCAGGCGAAGCAGCGACGTCCATCCGAATCCCGGGAGGGGACGCGCCC
CCCCCCTCCCACACCGCCTCCCGAGGACTTTACAGGACTGAGTTGTGCAT
TGGGTACGAAAAAGTAACAATAGAAGTCGACGGCGCCCGCCCGCCTTCTG
CCGTGGACGCTCTGTGAAAGCATGCAATATGCATGCCGTGTGGTGCGTGC
GTGTCGTCGTCCGTTGGCTTTAGGTTTTGGCGCTTCGCGGGTGTTGTCAG
CTCTTTCGGGAGGAACACTGTAGAGAAAAATAAGAGGGTCGGCGGGAGGA
GAAGGATGGTCGGCGATTGATGCCACGCGCCGCGGCAGAC
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Coding sequence (CDS) from alignment at H-elongata_contig17790:4407..6796-

>mRNA_H-elongata_contig17790.4684.1 ID=mRNA_H-elongata_contig17790.4684.1|Name=mRNA_H-elongata_contig17790.4684.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig17790:4407..6796- (Himanthalia elongata Himel1 dioecious)
ATGCAGGGGGACACTCTCAACTTCTTCGACGATCCTCCCCCGGGTAATCG
TGTCCCGACGTCGGGTGCAACCCAAACCGGAGGGCCGCCGGACGGTAACG
GAGGCGAATTCAACCTCGAGTTCATTGAATTCTCATCGTTTCAGATGCAG
GGGGACACTCTCAACTTCTTCGACGATCCTCCCCCGGGTAATCGTGTCCC
GACGTCGGGTGCAACCCAAACCGGAGGGCCGCCGGACGGTAACGGAGGCG
AATTCAACCTCGAGTTCATTGAATTCTCATCGTTTCAGGAACTCCTGGTG
TTCTTCGGCCGAACACTGACGGAGCGCTACGACACCTCCCGAGAGAAGCA
GGAGACCATTCCTTCCCCCATGTACATGCACAATATGGACGACTAAGAAC
TCCTGGTGTTCTTCGGCCGAACACTGACGGAGCGCTACGACACCTCCCGA
GAGAAGCAGGAGACCATTCCTTCCCCCATGTACATGCACAATATGGACGA
CTAA
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