mRNA_H-elongata_contig177865.4682.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177865.4682.1
Unique NamemRNA_H-elongata_contig177865.4682.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig177865.4682.1 vs. uniprot
Match: A0A6H5K5M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M7_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 2.520e-39
Identity = 75/103 (72.82%), Postives = 86/103 (83.50%), Query Frame = 1 
Query:   10 YRTVVFAANPRDGFVPLHSASVRCPPDSNLKKSGKSKADAVSREMARMLMSKVDERVNRVVRMTVDAPRRKQAQGALDSVIGRAGHMCFIDSAQVAWLISLAL 318
            +RT+VFAANPRDGFVPLHSASVR PP+ +   S      AVS EMA MLMSKV E  NRVVRMT+DAPR +Q+QGALD+VIGRAGHMCFI+S+QVAWL+SLAL
Sbjct: 1006 FRTIVFAANPRDGFVPLHSASVRTPPEGDAGGSSAGHTSAVSAEMAEMLMSKVSESANRVVRMTLDAPRNRQSQGALDTVIGRAGHMCFIESSQVAWLVSLAL 1108
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BLAST of mRNA_H-elongata_contig177865.4682.1 vs. uniprot
Match: D8LJW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW1_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 5.740e-26
Identity = 61/103 (59.22%), Postives = 70/103 (67.96%), Query Frame = 1 
Query:   10 YRTVVFAANPRDGFVPLHSASVRCPPDSNLKKSGKSKADAVSREMARMLMSKVDERVNRVVRMTVDAPRRKQAQGALDSVIGRAGHMCFIDSAQVAWLISLAL 318
            +RT+VFAANPRDGFVPLHSASVR PP+ +   S      AVS EMA MLMSK                    +QGALD+VIGRAGHMCFI+S+QVAWL+SLAL
Sbjct: 1205 FRTIVFAANPRDGFVPLHSASVRTPPEGDAGGSSAGHTSAVSAEMAEMLMSK--------------------SQGALDTVIGRAGHMCFIESSQVAWLVSLAL 1287
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BLAST of mRNA_H-elongata_contig177865.4682.1 vs. uniprot
Match: A0A8J2WP39_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WP39_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.020e-5
Identity = 40/109 (36.70%), Postives = 59/109 (54.13%), Query Frame = 1 
Query:   10 YRTVVFAANPRDGFVPLHSASVRCPPDSNLKKSGKSKADAVSREMARMLMSKVDERV------NRVVRMTVDAPRRKQAQGALDSVIGRAGHMCFIDSAQVAWLISLAL 318
            +R VV   + +D +VPLH+A    P  + + K G   A    R+MA  L+S V ++         VVR+T+D    + AQ  LD+VIGRA H+ +IDS+    LI  +L
Sbjct:  583 FRFVVLVGSLQDSYVPLHTAQATIPRPAEVDKKGGGDA---YRQMATNLLSPVMQQSATASKRTTVVRLTLDY---RFAQTNLDTVIGRAAHLAYIDSSAAVLLILFSL 685
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BLAST of mRNA_H-elongata_contig177865.4682.1 vs. uniprot
Match: F0YBP7_AURAN (DUF676 domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YBP7_AURAN)

HSP 1 Score: 50.4 bits (119), Expect = 2.220e-5
Identity = 37/112 (33.04%), Postives = 58/112 (51.79%), Query Frame = 1 
Query:    1 YSIYRTVVFAANPRDGFVPLHSASVRCPPDSNLKKSGKSKADAVSREMARMLMSKVDERV------NRVVRMTVDAPRRKQAQGALDSVIGRAGHMCFIDSAQVAWLISLAL 318
            +  ++ VV   + +D +VP+H+A    P  +   K G    DA   +MA  LMS + ++         VVR+T++    K  Q  LD+VIGRA H+ +IDS+    LI  +L
Sbjct:   49 FEYFKYVVLVGSTQDSYVPMHTAQATIPRPAEADKKGG--GDAYM-QMATNLMSPISQKTAESDKQTTVVRLTMEY---KFTQTNLDTVIGRAAHLAYIDSSAAVLLILFSL 154
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177865.4682.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5K5M7_9PHAE2.520e-3972.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJW1_ECTSI5.740e-2659.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J2WP39_9STRA1.020e-536.70Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YBP7_AURAN2.220e-533.04DUF676 domain-containing protein n=1 Tax=Aureococc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177865contigH-elongata_contig177865:531..893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.6
Seed ortholog evalue5.6e-23
Seed eggNOG ortholog2880.D8LJW1
EggNOG free text desc.carboxylic ester hydrolase activity
EggNOG OGsKOG2205@1,KOG2205@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930028.1551507-CDS-H-elongata_contig177865:530..7591622930028.1551507-CDS-H-elongata_contig177865:530..759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177865 531..759 -
1691679252.4246397-CDS-H-elongata_contig177865:530..7591691679252.4246397-CDS-H-elongata_contig177865:530..759Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177865 531..759 -
1622930028.1693-CDS-H-elongata_contig177865:804..8931622930028.1693-CDS-H-elongata_contig177865:804..893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177865 805..893 -
1691679252.4364781-CDS-H-elongata_contig177865:804..8931691679252.4364781-CDS-H-elongata_contig177865:804..893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177865 805..893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177865.4682.1prot_H-elongata_contig177865.4682.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177865 531..893 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177865.4682.1

>prot_H-elongata_contig177865.4682.1 ID=prot_H-elongata_contig177865.4682.1|Name=mRNA_H-elongata_contig177865.4682.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
YSIYRTVVFAANPRDGFVPLHSASVRCPPDSNLKKSGKSKADAVSREMAR
MLMSKVDERVNRVVRMTVDAPRRKQAQGALDSVIGRAGHMCFIDSAQVAW
LISLAL
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mRNA from alignment at H-elongata_contig177865:531..893-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177865.4682.1 ID=mRNA_H-elongata_contig177865.4682.1|Name=mRNA_H-elongata_contig177865.4682.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=363bp|location=Sequence derived from alignment at H-elongata_contig177865:531..893- (Himanthalia elongata Himel1 dioecious)
TATTCTATATACAGGACGGTTGTGTTCGCAGCGAACCCGCGCGACGGCTT
CGTGCCCCTTCATTCCGCCTCTGTCCGCTGCCCTCCCGAGTCGACCGCGA
GCGGCGCTAACATGGCGAATGGCCCCGGCAGCAGCAGCAACCTTAAGAAG
AGCGGCAAGAGCAAGGCGGACGCTGTGTCGAGAGAAATGGCCCGCATGCT
CATGTCAAAGGTGGACGAACGCGTGAACCGGGTGGTGCGGATGACGGTCG
ACGCGCCGCGACGTAAGCAGGCCCAGGGCGCGCTAGACTCGGTGATCGGG
CGCGCGGGGCATATGTGCTTTATCGATTCGGCGCAGGTGGCCTGGCTGAT
CTCGCTGGCGCTC
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Coding sequence (CDS) from alignment at H-elongata_contig177865:531..893-

>mRNA_H-elongata_contig177865.4682.1 ID=mRNA_H-elongata_contig177865.4682.1|Name=mRNA_H-elongata_contig177865.4682.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig177865:531..893- (Himanthalia elongata Himel1 dioecious)
TATTCTATATACAGGACGGTTGTGTTCGCAGCGAACCCGCGCGACGGCTT
CGTGCCCCTTCATTCCGCCTCTGTCCGCTGCCCTCCCGATATTCTATATA
CAGGACGGTTGTGTTCGCAGCGAACCCGCGCGACGGCTTCGTGCCCCTTC
ATTCCGCCTCTGTCCGCTGCCCTCCCGACAGCAACCTTAAGAAGAGCGGC
AAGAGCAAGGCGGACGCTGTGTCGAGAGAAATGGCCCGCATGCTCATGTC
AAAGGTGGACGAACGCGTGAACCGGGTGGTGCGGATGACGGTCGACGCGC
CGCGACGTAAGCAGGCCCAGGGCGCGCTAGACTCGGTGATCGGGCGCGCG
GGGCATATGTGCTTTATCGATTCGGCGCAGGTGGCCTGGCTGATCTCGCT
GGCGCTCCAGCAACCTTAAGAAGAGCGGCAAGAGCAAGGCGGACGCTGTG
TCGAGAGAAATGGCCCGCATGCTCATGTCAAAGGTGGACGAACGCGTGAA
CCGGGTGGTGCGGATGACGGTCGACGCGCCGCGACGTAAGCAGGCCCAGG
GCGCGCTAGACTCGGTGATCGGGCGCGCGGGGCATATGTGCTTTATCGAT
TCGGCGCAGGTGGCCTGGCTGATCTCGCTGGCGCTC
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