mRNA_H-elongata_contig105673.468.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig105673.468.1
Unique NamemRNA_H-elongata_contig105673.468.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig105673.468.1 vs. uniprot
Match: D7FWK1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK1_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 3.760e-30
Identity = 62/83 (74.70%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    1 DRLLELLQKPSAMDDVCMSMTVFPQELLTLIAWPNHLPPYSSSICVTHGPVARNMVAQDVIEVLLSNNNGASGGPVVDKRGEV 249
            + LLE+L++    +DVCM+MTVFPQELLTL+A+P H+ PY SSI VTHGPVARNMV QDVIEVLLSN+ GASGGPVVDKRGEV
Sbjct: 2112 EALLEVLKEED--NDVCMTMTVFPQELLTLVAFPEHIAPYFSSISVTHGPVARNMVGQDVIEVLLSNHPGASGGPVVDKRGEV 2192
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BLAST of mRNA_H-elongata_contig105673.468.1 vs. uniprot
Match: A0A6H5J7I8_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7I8_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 9.560e-30
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    1 DRLLELLQKPSAMDDVCMSMTVFPQELLTLIAWPNHLPPYSSSICVTHGPVARNMVAQDVIEVLLSNNNGASGGPVVDKRGEV 249
            + LLE+L++    +DVCM+MTVFPQELLTL+A+P H  PY SSI VTHGPVARNMV QDVIEVLLSN+ GASGGPVVDKRGEV
Sbjct: 2137 EALLEVLKEED--NDVCMTMTVFPQELLTLVAFPEHTAPYFSSISVTHGPVARNMVGQDVIEVLLSNHPGASGGPVVDKRGEV 2217
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig105673.468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FWK1_ECTSI3.760e-3074.70LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5J7I8_9PHAE9.560e-3074.70Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig105673contigH-elongata_contig105673:1653..2264 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score123.2
Seed ortholog evalue5.5e-26
Seed eggNOG ortholog2880.D7FWK1
Preferred namePKD1
KEGG koko:K04985,ko:K10348,ko:K10641
KEGG TC1.A.5.1.1
GOsGO:0000075,GO:0000076,GO:0000151,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0022402,GO:0031461,GO:0031462,GO:0031570,GO:0032991,GO:0033314,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902749,GO:1902750,GO:1903047,GO:1990234
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04040,ko04091,ko04121,ko04131,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size249
Cds size249
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929590.0985723-CDS-H-elongata_contig105673:1652..18021622929590.0985723-CDS-H-elongata_contig105673:1652..1802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105673 1653..1802 +
1691679081.9502711-CDS-H-elongata_contig105673:1652..18021691679081.9502711-CDS-H-elongata_contig105673:1652..1802Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105673 1653..1802 +
1622929590.136252-CDS-H-elongata_contig105673:2165..22641622929590.136252-CDS-H-elongata_contig105673:2165..2264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105673 2166..2264 +
1691679081.9613044-CDS-H-elongata_contig105673:2165..22641691679081.9613044-CDS-H-elongata_contig105673:2165..2264Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig105673 2166..2264 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig105673.468.1prot_H-elongata_contig105673.468.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig105673 1653..2264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig105673.468.1

>prot_H-elongata_contig105673.468.1 ID=prot_H-elongata_contig105673.468.1|Name=mRNA_H-elongata_contig105673.468.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
DRLLELLQKPSAMDDVCMSMTVFPQELLTLIAWPNHLPPYSSSICVTHGP
VARNMVAQDVIEVLLSNNNGASGGPVVDKRGEV
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mRNA from alignment at H-elongata_contig105673:1653..2264+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig105673.468.1 ID=mRNA_H-elongata_contig105673.468.1|Name=mRNA_H-elongata_contig105673.468.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=612bp|location=Sequence derived from alignment at H-elongata_contig105673:1653..2264+ (Himanthalia elongata Himel1 dioecious)
GATCGCCTACTGGAGTTGCTGCAGAAGCCCAGCGCGATGGACGACGTCTG
CATGAGCATGACCGTGTTTCCACAGGAGCTTCTCACGCTAATTGCGTGGC
CGAACCACTTGCCGCCTTACTCGTCCTCCATCTGTGTCACGCACGGGCCA
GTGAGTAAAAGCTTTGCGCGGAAAATGGATTAGATAGAAAGTGATAGGGA
AAATGTGGTAAAGTTGGTCGAACAAAAAGCGAGCTTGCCTCTCCCACGCC
CCTTCCTTTCTCCTATGTAGACGTATATAATTGTATAGATAGAGTAAACG
CCTTTCACCCAGCGATCCCATTTTCGCACCCTCGTACACATGTTTCGGTT
AATTTCGCGGGGGCCATTGACGCTGGATAGGATACATGTAGATCGTATTA
AGGGATAGGAGCGGTGCTCTGAACCACCCCACCGCCACGCTTTAGACTCA
AAACATTTTTTTTGCTTTTGCCGACTACTTTTTTTTTTTTGGGGTGTGTG
TGTTTTTTGTCAGGTCGCTAGGAACATGGTGGCGCAAGATGTCATCGAAG
TTTTGCTCTCGAACAACAACGGCGCGAGCGGCGGACCGGTGGTGGATAAG
AGGGGAGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig105673:1653..2264+

>mRNA_H-elongata_contig105673.468.1 ID=mRNA_H-elongata_contig105673.468.1|Name=mRNA_H-elongata_contig105673.468.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig105673:1653..2264+ (Himanthalia elongata Himel1 dioecious)
GATCGCCTACTGGAGTTGCTGCAGAAGCCCAGCGCGATGGACGACGTCTG
CATGAGCATGACCGTGTTTCCACAGGAGCTTCTCACGCTAATTGCGTGGC
CGAACCACTTGCCGCCTTACTCGTCCTCCATCTGTGTCACGCACGGGCCA
GATCGCCTACTGGAGTTGCTGCAGAAGCCCAGCGCGATGGACGACGTCTG
CATGAGCATGACCGTGTTTCCACAGGAGCTTCTCACGCTAATTGCGTGGC
CGAACCACTTGCCGCCTTACTCGTCCTCCATCTGTGTCACGCACGGGCCA
GTCGCTAGGAACATGGTGGCGCAAGATGTCATCGAAGTTTTGCTCTCGAA
CAACAACGGCGCGAGCGGCGGACCGGTGGTGGATAAGAGGGGAGAGGTAG
TCGCTAGGAACATGGTGGCGCAAGATGTCATCGAAGTTTTGCTCTCGAAC
AACAACGGCGCGAGCGGCGGACCGGTGGTGGATAAGAGGGGAGAGGTA
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