mRNA_H-elongata_contig17769.4678.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17769.4678.1
Unique NamemRNA_H-elongata_contig17769.4678.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17769.4678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17769contigH-elongata_contig17769:3719..4028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size312
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930027.8605947-CDS-H-elongata_contig17769:3718..40271622930027.8605947-CDS-H-elongata_contig17769:3718..4027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17769 3719..4027 +
1691679252.3134356-CDS-H-elongata_contig17769:3718..40271691679252.3134356-CDS-H-elongata_contig17769:3718..4027Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17769 3719..4027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17769.4678.1prot_H-elongata_contig17769.4678.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17769 3719..4027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17769.4678.1

>prot_H-elongata_contig17769.4678.1 ID=prot_H-elongata_contig17769.4678.1|Name=mRNA_H-elongata_contig17769.4678.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
QARFQILRLSVVSCLSYLLRTVPPSHHPPSRRKLQCFNGVSVGVYHSMWR
SCCGRATNPGGSSPRSQGMPRPDLSGTHEALRQAQLPIREGGSNAIKGAA
YID
back to top

mRNA from alignment at H-elongata_contig17769:3719..4028+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17769.4678.1 ID=mRNA_H-elongata_contig17769.4678.1|Name=mRNA_H-elongata_contig17769.4678.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=310bp|location=Sequence derived from alignment at H-elongata_contig17769:3719..4028+ (Himanthalia elongata Himel1 dioecious)
CAAGCAAGGTTTCAGATCCTGCGTCTGTCCGTCGTTTCCTGCCTGTCATA
CCTCCTCCGCACAGTCCCGCCCTCCCATCACCCACCAAGCCGCCGCAAAT
TACAATGCTTTAATGGAGTGAGCGTTGGCGTCTATCATAGCATGTGGCGG
AGCTGCTGCGGCAGGGCTACCAATCCCGGAGGAAGTTCTCCACGGTCCCA
GGGTATGCCGAGACCAGACCTATCTGGGACACATGAAGCCCTACGTCAGG
CCCAACTGCCAATCCGAGAAGGCGGCAGCAACGCGATCAAAGGCGCAGCG
TATATCGATT
back to top

Coding sequence (CDS) from alignment at H-elongata_contig17769:3719..4028+

>mRNA_H-elongata_contig17769.4678.1 ID=mRNA_H-elongata_contig17769.4678.1|Name=mRNA_H-elongata_contig17769.4678.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig17769:3719..4028+ (Himanthalia elongata Himel1 dioecious)
CAAGCAAGGTTTCAGATCCTGCGTCTGTCCGTCGTTTCCTGCCTGTCATA
CCTCCTCCGCACAGTCCCGCCCTCCCATCACCCACCAAGCCGCCGCAAAT
TACAATGCTTTAATGGAGTGAGCGTTGGCGTCTATCATAGCATGTGGCGG
AGCTGCTGCGGCAGGGCTACCAATCCCGGAGGAAGTTCTCCACGGTCCCA
GGGTATGCCGAGACCAGACCTATCTGGGACACATGAAGCCCTACGTCAGG
CCCAACTGCCAATCCGAGAAGGCGGCAGCAACGCGATCAAAGGCGCAGCG
TATATCGATCAAGCAAGGTTTCAGATCCTGCGTCTGTCCGTCGTTTCCTG
CCTGTCATACCTCCTCCGCACAGTCCCGCCCTCCCATCACCCACCAAGCC
GCCGCAAATTACAATGCTTTAATGGAGTGAGCGTTGGCGTCTATCATAGC
ATGTGGCGGAGCTGCTGCGGCAGGGCTACCAATCCCGGAGGAAGTTCTCC
ACGGTCCCAGGGTATGCCGAGACCAGACCTATCTGGGACACATGAAGCCC
TACGTCAGGCCCAACTGCCAATCCGAGAAGGCGGCAGCAACGCGATCAAA
GGCGCAGCGTATATCGAT
back to top