mRNA_H-elongata_contig177689.4677.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177689.4677.1
Unique NamemRNA_H-elongata_contig177689.4677.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig177689.4677.1 vs. uniprot
Match: A0A6G0XZE5_APHCR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0XZE5_APHCR)

HSP 1 Score: 47.4 bits (111), Expect = 2.210e-5
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = -1 
Query:  100 SYERVFSTAGNVVMKKRNRLSPESVQRLVFLH 195
            S ER FSTAGNVV +KR  LSPE+V+ LVFLH
Sbjct:    9 SVERCFSTAGNVVTRKRASLSPENVKLLVFLH 40
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177689.4677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6G0XZE5_APHCR2.210e-571.88Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ap... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177689contigH-elongata_contig177689:27..944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size268
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930027.7797205-CDS-H-elongata_contig177689:26..2131622930027.7797205-CDS-H-elongata_contig177689:26..213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177689 27..213 +
1691679252.2956262-CDS-H-elongata_contig177689:26..2131691679252.2956262-CDS-H-elongata_contig177689:26..213Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177689 27..213 +
1622930027.792471-CDS-H-elongata_contig177689:864..9441622930027.792471-CDS-H-elongata_contig177689:864..944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177689 865..944 +
1691679252.3040848-CDS-H-elongata_contig177689:864..9441691679252.3040848-CDS-H-elongata_contig177689:864..944Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177689 865..944 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177689.4677.1prot_H-elongata_contig177689.4677.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177689 27..944 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177689.4677.1

>prot_H-elongata_contig177689.4677.1 ID=prot_H-elongata_contig177689.4677.1|Name=mRNA_H-elongata_contig177689.4677.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
TQTTVTKPSVTMPLLGLIHLPRDSHLPSNTVTTMEENQSLNRLGRQSVPL
LHHDVPRCREDALITFTVTGMLLDIQQSSKVLLVRHVVR
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mRNA from alignment at H-elongata_contig177689:27..944+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177689.4677.1 ID=mRNA_H-elongata_contig177689.4677.1|Name=mRNA_H-elongata_contig177689.4677.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=918bp|location=Sequence derived from alignment at H-elongata_contig177689:27..944+ (Himanthalia elongata Himel1 dioecious)
ACTCAAACTACAGTCACCAAGCCTTCCGTAACCATGCCTCTACTTGGGCT
TATCCATCTCCCTCGTGATTCACATCTTCCATCCAACACCGTGACAACCA
TGGAGGAAAACCAATCTTTGAACAGACTCGGGCGACAGTCTGTTCCTCTT
CTTCATCACGACGTTCCCCGCTGTAGAGAAGACGCGCTCTGATGATGCTG
AAGTGGCGGGCACTGCAAGGTAGACACATGCCACCCTGTACAGCAGCGGT
AATTCATGCCTGTGGTCGACCCATCACCCGAGGACCCGTTTGCCACTTCT
TCCCGGATCCAGGGTGGGCACCTGATCGTATCGAAACAGTTCCGCCTCAG
CCTTCTGGGCGGTGCGAGCCGCGATGGTCTGATGGTTCTCACCGGATCCG
TTTGCTCCAGCGGGGTCGTCGTCGTCTTCCATCGTTGCGTGTCTCCTGAG
CATGGTCTTGAAAAGCGGACCCGACTCTGTGGATTTCCGCTTCCGGCCGT
CCACGGAAGCTGAGGATGCGTTCATCTCCGCAGCTCCCTCAGTTAGCGCG
CCACCGCTCGTGGTATTGGTCTTGCACGGGATCACAGCGAAACAGTGTGG
GCAGAGCGCCTGAATCCCATTCGCGTGTCGCAGCCAGCCTCCCACCTTGT
AAAGCCAAGATGTCAACGTCGATCGAGGCCTGAAGAAAGACATGTCCACG
CTCGCGGCTGCCTCCTCTTCTTCATCATCGTCCTTTTCCCTCTCCCCTTC
ATTCCCCGCGTAGTCCGCGTCTGGTTCTTCCACCACTTGGACGTCGTCCT
TCTCCTCCTTCTCCTCATCCTCTATGGACTGATTGGGGTCATAACTTTCA
CCGTTACCGGCATGTTGCTTGATATCCAGCAAAGTAGCAAGGTCTTGCTC
GTTCGCCATGTGGTCAGG
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Coding sequence (CDS) from alignment at H-elongata_contig177689:27..944+

>mRNA_H-elongata_contig177689.4677.1 ID=mRNA_H-elongata_contig177689.4677.1|Name=mRNA_H-elongata_contig177689.4677.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig177689:27..944+ (Himanthalia elongata Himel1 dioecious)
ACTCAAACTACAGTCACCAAGCCTTCCGTAACCATGCCTCTACTTGGGCT
TATCCATCTCCCTCGTGATTCACATCTTCCATCCAACACCGTGACAACCA
TGGAGGAAAACCAATCTTTGAACAGACTCGGGCGACAGTCTGTTCCTCTT
CTTCATCACGACGTTCCCCGCTGTAGAGAAGACGCGCACTCAAACTACAG
TCACCAAGCCTTCCGTAACCATGCCTCTACTTGGGCTTATCCATCTCCCT
CGTGATTCACATCTTCCATCCAACACCGTGACAACCATGGAGGAAAACCA
ATCTTTGAACAGACTCGGGCGACAGTCTGTTCCTCTTCTTCATCACGACG
TTCCCCGCTGTAGAGAAGACGCGCTCATAACTTTCACCGTTACCGGCATG
TTGCTTGATATCCAGCAAAGTAGCAAGGTCTTGCTCGTTCGCCATGTGGT
CAGGTCATAACTTTCACCGTTACCGGCATGTTGCTTGATATCCAGCAAAG
TAGCAAGGTCTTGCTCGTTCGCCATGTGGTCAGG
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