prot_H-elongata_contig10564.467.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig10564.467.1
Unique Nameprot_H-elongata_contig10564.467.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length227
Homology
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: D7FSG7_ECTSI (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSG7_ECTSI)

HSP 1 Score: 298 bits (762), Expect = 2.350e-96
Identity = 156/258 (60.47%), Postives = 181/258 (70.16%), Query Frame = 0
Query:    1 MCMRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGN-------------------------------PEGNQNEFPETSVDEHRAQRDEILRRYRKDAERKTKLAAK 227
            +C+REL KRDPTFA+TLK+KT+AK G +HPDLRAV+PCPVPLV+VGNKYDVFKNQES RKR L QALRF+AH+NGASLLFCSS++KKLKD+ + TLN HLFR+  RK SETNPERPL V  G DS+D+ILK+TP GTRREDF+SG  +ADGAM  WKRA++DVFGA D +              GG+                                    N FPE +VDEHRAQRDEILRRYRKDAERK KLA K
Sbjct:  169 VCVRELGKRDPTFAETLKRKTYAKLGRDHPDLRAVRPCPVPLVIVGNKYDVFKNQESARKRILAQALRFVAHINGASLLFCSSRDKKLKDILRLTLNTHLFRAGSRKSSETNPERPLAVTAGCDSLDSILKNTPPGTRREDFLSGNGIADGAMGVWKRAVEDVFGAPDRA--------------GGSLMSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTDNPFPEAAVDEHRAQRDEILRRYRKDAERKAKLAMK 412          
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: A0A6H5L1B5_9PHAE (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1B5_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 3.020e-82
Identity = 120/168 (71.43%), Postives = 142/168 (84.52%), Query Frame = 0
Query:    1 MCMRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATD 168
            +C+REL KRDPTFA+TLK+ T+AK G +HPDLR+V+PCPVPLV+VGNKYDVFKNQES RKR L QALRF+AH+NGASLLFCSS+EKKLKD+ + TLN HLFR+S RK SETNPERPL V  G DS+ +ILK+TP GTR EDF+SG  +ADGAM  WKR ++DVFG  D
Sbjct:  169 VCVRELGKRDPTFAETLKRTTYAKLGRDHPDLRSVRPCPVPLVMVGNKYDVFKNQESARKRILAQALRFVAHVNGASLLFCSSREKKLKDILRLTLNTHLFRASSRKSSETNPERPLVVTAGCDSLGSILKNTPPGTRLEDFLSGNGIADGAMGVWKRTVEDVFGPPD 336          
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: A0A835YX97_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX97_9STRA)

HSP 1 Score: 213 bits (541), Expect = 2.570e-63
Identity = 111/228 (48.68%), Postives = 147/228 (64.47%), Query Frame = 0
Query:    3 MRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPS------DELQENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYRKDAERKTKL 224
            +REL K DPTFAD LK++T+AKFG  HPDL+ VKPCPVPL+ V NKYDVF++ +S R+R +GQALRF+AH+NGA+LL CS+K+K LKD F+  LN HLF +  ++ SET PE+PL V  G+D+ ++ILK  P  TR  DF+    + +GA   W+R I++  G                                   +PE +VDE RAQRDE+LRRYRK+AER+ KL
Sbjct:  182 VRELAKADPTFADGLKRRTYAKFGREHPDLKIVKPCPVPLIFVANKYDVFRDSDSARRRLVGQALRFLAHVNGATLLCCSAKDKALKDAFRALLNRHLFAAPAKRLSETAPEKPLAVSAGADTFESILKAPPGATRYSDFIGTSGVMEGAAALWQRHIEEACGGASAEALALARGXXXXXXXXKXXXXXXXXXXXXXXYPEPAVDEMRAQRDELLRRYRKEAERRAKL 409          
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: A0A7S2FGJ4_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FGJ4_9STRA)

HSP 1 Score: 152 bits (385), Expect = 3.490e-41
Identity = 85/224 (37.95%), Postives = 131/224 (58.48%), Query Frame = 0
Query:    2 CMRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSE-TNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYRKDAERKTKL 224
            C+  L + +P  A  L++    +   +H D R V+P  +PL+++ NKYD++K+ ESV+K+T+ QALRF+AH NGA+LL   +++K  ++  +  L   LFR+S  K  E TN ++P+ VP G DS D ILK  P GT   DFV  +++   A  TW R ++D+FG     D+ +           G  +     F E +VD+ R+QRD  L +Y+K+AERK +L
Sbjct:  118 CVATLKQTNPEAASALEESASLRIPADHADARVVRPMTIPLLIIANKYDIYKDMESVQKKTISQALRFVAHSNGATLLTVGARDKASQNNLRMQLTQLLFRTSSSKKVELTNHDKPMAVPAGVDSFDNILKIPPKGTDVADFVGPRSVNSDANVTWARVMEDMFGPKRSLDDAE-----------GEEKKEDEVFLEPAVDDMRSQRDAALVQYKKEAERKLQL 330          
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: UPI0001CB9D22 (cytoplasmic dynein 2 light intermediate chain 1-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CB9D22)

HSP 1 Score: 134 bits (336), Expect = 6.960e-34
Identity = 78/225 (34.67%), Postives = 126/225 (56.00%), Query Frame = 0
Query:    3 MRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYRKDAERKTKLAAK 227
            M++ + RD T    +K K ++KFG +HPD   ++P PVPLV++G KYDVF++ +S +++ + + LRF+AH +GA+L FCS K + L    +Q ++  +F ++  K    +P +P+ VP G DS+  I    P      D   GK  A   ++ WK+A    F     S  + E+P+ +             ++ E++VD  RAQ+DE L RYR+ +ERK K  A+
Sbjct:  150 MQDASMRDSTLQPRMKNKAWSKFGEDHPDKDMIEPFPVPLVIIGCKYDVFQDFDSEKRKVICRTLRFVAHSHGATLQFCSLKTESLVTRTRQLISHFVFNTASSKAMAVDPNKPVIVPAGMDSLQQI---GPPPVAEGDI--GKLTARNPLELWKQAYTAFF-PQQISSSVAEDPAKDP------------QYSESAVDNMRAQKDEELERYRRQSERKAKDLAR 356          
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: A0A485KQ56_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KQ56_9STRA)

HSP 1 Score: 128 bits (322), Expect = 3.180e-31
Identity = 85/226 (37.61%), Postives = 123/226 (54.42%), Query Frame = 0
Query:    3 MRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYR-KDAERKTKLAAK 227
            +R+LT   P   + L     AK+G  HPD R V P  +PL++VG KY+ F+++ES +++TL QA+RFIAH  GA+L+F S K+K L   F+ TL A L+++ G K ++   E+ LFVP GSDS D I    P G R  DF       D  M  W +A+ + +    P  + Q     ++            +FPE  +D  R Q+ E LRRY+ K  ++K K  AK
Sbjct:  250 LRKLTPEGPKDENAL----LAKYGATHPDRRDVSPVALPLLIVGAKYETFRDEESAKRKTLVQAVRFIAHAIGATLMFTSVKDKALATQFRTTLTAMLYKTDGGKSTK-ELEKGLFVPAGSDSFDDI--GLPKGARATDFEDANL--DKRMKLWAKAVAESYPPVTPEVKEQVEDEKDEA---------DEKFPEPVIDALRKQKREELRRYKEKKVDKKPKKDAK 457          
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: A0A225X019_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X019_9STRA)

HSP 1 Score: 127 bits (318), Expect = 3.940e-31
Identity = 82/231 (35.50%), Postives = 128/231 (55.41%), Query Frame = 0
Query:    3 MRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGS-ETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVF--GATDPSDEL-QENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYR----KDAERKTKLA 225
            M+E    D    D L+++  A++G  HPD   + P P+PL+VVGNKYD F++++ ++++ + QA+RF++H+ GA++LF S K+K L   F+  +    FRS  R  S E +P +PLFVP G+D  + I      G R++ F  G+   +     W +   + +   A    D L Q+  S  D  +G   E + N FPE S+D  R Q+ E LRRYR    K  ERK++ +
Sbjct:  157 MKEKNPVDKFAVDALRQEAMARYGHGHPDKDEISPLPLPLLVVGNKYDTFRDEDPIKRKGVIQAVRFLSHMYGATVLFTSMKDKNLVTQFRSVMKGFAFRSMARGTSKEVDPAKPLFVPAGADLFEDIGVPKSAGWRQDRF--GRDQHEEKARQWIKVASEYYPPSANAAEDLLTQKEVSEQDDKDG---EESPNHFPEPSIDRARQQKREELRRYRDNRRKAQERKSRAS 382          
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: UPI00109BF3C2 (LOW QUALITY PROTEIN: cytoplasmic dynein 2 light intermediate chain 1-like n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI00109BF3C2)

HSP 1 Score: 126 bits (317), Expect = 5.600e-31
Identity = 78/221 (35.29%), Postives = 118/221 (53.39%), Query Frame = 0
Query:    5 ELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYRKDAERKTKLA 225
            EL K+DP+  D +KK  + +FG +HPD   V+P PVPL ++G KYD++++ +  +++ + +ALRF+AH NGA L F S+K + L    +  +   LF +S  K       +P+ VP G D+++ I    P  +  ED   GK  +    D WK +    F            P  N + N G+      +F E++VD  R Q+DE L RYRK AERK + A
Sbjct:  166 ELAKKDPSAVDEMKKNAWKRFGKDHPDKSFVEPFPVPLAIIGGKYDIYQDLDPEKRKMISKALRFVAHSNGAHLQFFSTKSENLTGRARALIGHLLFHTSLSKSVSLEHSKPIIVPAGLDTLNQIGA-PPVSS--EDL--GKLQSRSPYDLWKASYATFF------------PPENVHRNQGDDPSKDPQFYESAVDAMRKQKDEELERYRKMAERKAREA 369          
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: W2JJR5_PHYPR (Cytoplasmic dynein 2 light intermediate chain 1 n=10 Tax=Phytophthora TaxID=4783 RepID=W2JJR5_PHYPR)

HSP 1 Score: 126 bits (316), Expect = 7.680e-31
Identity = 80/224 (35.71%), Postives = 127/224 (56.70%), Query Frame = 0
Query:   10 DPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGS-ETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFG-ATDPSDEL--QENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYR----KDAERKTKLA 225
            D    D LK    A++G  HPD   V P P+P++VVGNKYD F++++S++++ + QA+R+++H+ GAS+LF S K+K L   F+  +    FR+  R  S E +P +PLFVP G+D  + I        R++ F  GK   +     W +   + +  + + S++L  Q+  S  D  +G   E + N+FPE ++D  R Q+ E LRRYR    K  ERK++ A
Sbjct:  164 DKFAVDALKHDAMARYGNGHPDRDEVAPLPLPVLVVGNKYDTFRDEDSIKRKGITQAVRYLSHMYGASVLFTSMKDKNLVTQFRSIMKGFAFRAMARGASKEVDPAKPLFVPAGADLFEDIGVPKSAAWRQDRF--GKDQHEEKARQWIKIASEYYPPSANASEDLLTQKELSEQDDKDG---EESSNQFPEPNIDRARQQKQEELRRYRDNRRKAQERKSRGA 382          
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Match: A0A024TDT2_9STRA (Cytoplasmic dynein 2 light intermediate chain 1 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TDT2_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.710e-30
Identity = 77/205 (37.56%), Postives = 119/205 (58.05%), Query Frame = 0
Query:   23 AKFGPNHPDLRAVKPCPVPLVVVGNKYDVFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHLFRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLADGAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGNPEGNQNEFPETSVDEHRAQRDEILRRYRKDAERKTKLAAK 227
            AK+G  HPD R V P  +PL++VG KY+ F++++SV+++ L QA+R+IAH  GA+LLF + K+K L   F+  LNA L++S G   S    ++ LFVP GSD+ + I    P G R  DF       D  M  W +AI +++    P +   ++  ++D       +   +++PE S+D  R Q+ E LRRY KD + + K +AK
Sbjct:  153 AKYGEKHPDRRDVSPISIPLLIVGAKYETFRDEDSVKRKGLIQAVRYIAHAIGATLLFTTVKDKALATQFRSALNAALYKSEGGGKSTKEVDKGLFVPPGSDTFEEI--GLPKGARVADFEESNL--DKRMKLWAKAIAELYPPVTPPEAAGKDAVDDDK------DDVDDKYPEPSIDALRKQKREELRRY-KDKKTEKKPSAK 346          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10564.467.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSG7_ECTSI2.350e-9660.47Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A6H5L1B5_9PHAE3.020e-8271.43Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A835YX97_9STRA2.570e-6348.68Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A7S2FGJ4_9STRA3.490e-4137.95Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
UPI0001CB9D226.960e-3434.67cytoplasmic dynein 2 light intermediate chain 1-li... [more]
A0A485KQ56_9STRA3.180e-3137.61Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A225X019_9STRA3.940e-3135.50Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
UPI00109BF3C25.600e-3135.29LOW QUALITY PROTEIN: cytoplasmic dynein 2 light in... [more]
W2JJR5_PHYPR7.680e-3135.71Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]
A0A024TDT2_9STRA1.710e-3037.56Cytoplasmic dynein 2 light intermediate chain 1 n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 13..106
e-value: 7.7E-6
score: 27.1
IPR040045Cytoplasmic dynein 2 light intermediate chain 1PANTHERPTHR13236DYNEIN 2 LIGHT INTERMEDIATE CHAIN, ISOFORM 2coord: 3..223
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 29..99

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10564contigH-elongata_contig10564:248..1941 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10564.467.1mRNA_H-elongata_contig10564.467.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig10564 236..1941 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig10564.467.1 ID=prot_H-elongata_contig10564.467.1|Name=mRNA_H-elongata_contig10564.467.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=227bp
MCMRELTKRDPTFADTLKKKTFAKFGPNHPDLRAVKPCPVPLVVVGNKYD
VFKNQESVRKRTLGQALRFIAHLNGASLLFCSSKEKKLKDVFQQTLNAHL
FRSSGRKGSETNPERPLFVPLGSDSMDAILKHTPTGTRREDFVSGKTLAD
GAMDTWKRAIQDVFGATDPSDELQENPSNNDYGNGGNPEGNQNEFPETSV
DEHRAQRDEILRRYRKDAERKTKLAAK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR040045DYNC2LI1
IPR027417P-loop_NTPase