mRNA_H-elongata_contig177641.4675.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177641.4675.1
Unique NamemRNA_H-elongata_contig177641.4675.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig177641.4675.1 vs. uniprot
Match: D7G9H6_ECTSI (Mitochondrial Processing Peptidase beta subunit (C-terminal region) Mitochondrial Processing Peptida n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9H6_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 1.140e-25
Identity = 59/70 (84.29%), Postives = 63/70 (90.00%), Query Frame = 1 
Query:    7 IERFGAWLCA---REQTVYYAKVFKEDLGRGLEILSDILIHSLLDEGAVHRERDVIIREMEEVNKQQEEV 207
            IE  GA L A   REQTVYYAKVFKEDLGRGLEILSDIL++SL+DEGAVHRERDVI+REMEEVNKQQEEV
Sbjct:  150 IEDMGAHLNAYTSREQTVYYAKVFKEDLGRGLEILSDILMNSLIDEGAVHRERDVILREMEEVNKQQEEV 219
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BLAST of mRNA_H-elongata_contig177641.4675.1 vs. uniprot
Match: A0A7S2N0R5_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N0R5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.570e-21
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 VRIERFGAWLCA---REQTVYYAKVFKEDLGRGLEILSDILIHSLLDEGAVHRERDVIIREMEEVNKQQEEV 207
            V IE  G  L A   REQTVY+AKVFK+D+GR +EILSDIL++S LDEGA+ RERDVI+REM EVNKQQEE+
Sbjct:  110 VEIENMGGHLNAYTSREQTVYFAKVFKKDVGRAVEILSDILLNSKLDEGAIDRERDVILREMAEVNKQQEEL 181
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BLAST of mRNA_H-elongata_contig177641.4675.1 vs. uniprot
Match: A0A7S1DZP2_9STRA (Hypothetical protein (Fragment) n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1DZP2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.630e-21
Identity = 49/72 (68.06%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 VRIERFGAWLCA---REQTVYYAKVFKEDLGRGLEILSDILIHSLLDEGAVHRERDVIIREMEEVNKQQEEV 207
            V IE  G  L A   REQTVY+AKVFK+D+G+ LEILSDIL++S L+EGA+ RERDVI+REM EVNKQQEE+
Sbjct:   73 VEIENMGGHLNAYTSREQTVYFAKVFKKDVGQALEILSDILLNSKLEEGAIERERDVILREMTEVNKQQEEL 144
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BLAST of mRNA_H-elongata_contig177641.4675.1 vs. uniprot
Match: A0A8J9S0U3_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S0U3_PHATR)

HSP 1 Score: 90.5 bits (223), Expect = 1.660e-20
Identity = 48/72 (66.67%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    1 VRIERFGAWLCA---REQTVYYAKVFKEDLGRGLEILSDILIHSLLDEGAVHRERDVIIREMEEVNKQQEEV 207
            + IE  G  L A   REQTVY+AKVFK+D+G+ +EILSDIL+HS LDE A+ RERDVI+REM EVNKQQEE+
Sbjct:   95 LEIENMGGHLNAYTSREQTVYFAKVFKDDVGKAVEILSDILLHSKLDEAAIDRERDVILREMAEVNKQQEEL 166
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BLAST of mRNA_H-elongata_contig177641.4675.1 vs. uniprot
Match: F0YAD5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAD5_AURAN)

HSP 1 Score: 92.4 bits (228), Expect = 2.350e-20
Identity = 51/72 (70.83%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    1 VRIERFGAWLCA---REQTVYYAKVFKEDLGRGLEILSDILIHSLLDEGAVHRERDVIIREMEEVNKQQEEV 207
            V +E  GA L A   REQTVYYAK+FKED+G G+EIL DIL +SLLD GAV RERDVI+REMEEVNKQ EE+
Sbjct:   89 VEVEDMGAHLNAYTSREQTVYYAKLFKEDVGAGMEILGDILQNSLLDAGAVERERDVILREMEEVNKQHEEL 160
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BLAST of mRNA_H-elongata_contig177641.4675.1 vs. uniprot
Match: A0A6S8R8K4_9STRA (Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A6S8R8K4_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 2.690e-20
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 1 
Query:    1 VRIERFGAWLCA---REQTVYYAKVFKEDLGRGLEILSDILIHSLLDEGAVHRERDVIIREMEEVNKQQEEV 207
            V IE  G  L A   REQTVY+AKVFK+D+GR +EILSDIL++S LDEGA+ RERDVI+REM EVNKQQEE+
Sbjct:  135 VEIENMGGHLNAYTSREQTVYFAKVFKKDVGRAVEILSDILLNSKLDEGAIERERDVILREMAEVNKQQEEL 206
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BLAST of mRNA_H-elongata_contig177641.4675.1 vs. uniprot
Match: A0A1Z5J963_FISSO (Mitochondrial-processing peptidase subunit alpha n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J963_FISSO)

HSP 1 Score: 91.7 bits (226), Expect = 4.690e-20
Identity = 49/72 (68.06%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 VRIERFGAWLCA---REQTVYYAKVFKEDLGRGLEILSDILIHSLLDEGAVHRERDVIIREMEEVNKQQEEV 207
            V IE  G  L A   REQTVY+AKVFK DL + +EILSDIL+HS LDEGA+ RERDVI+REM E+NKQQEE+
Sbjct:  106 VEIENMGGHLNAYTSREQTVYFAKVFKNDLKKAVEILSDILLHSKLDEGAIERERDVILREMSEINKQQEEL 177
[Close]
BLAST of mRNA_H-elongata_contig177641.4675.1 vs. uniprot
Match: B7G150_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G150_PHATC)

HSP 1 Score: 90.5 bits (223), Expect = 1.210e-19
Identity = 48/72 (66.67%), Postives = 58/72 (80.56%), Query Frame = 1 
Query:    1 VRIERFGAWLCA---REQTVYYAKVFKEDLGRGLEILSDILIHSLLDEGAVHRERDVIIREMEEVNKQQEEV 207
            + IE  G  L A   REQTVY+AKVFK+D+G+ +EILSDIL+HS LDE A+ RERDVI+REM EVNKQQEE+
Sbjct:  104 LEIENMGGHLNAYTSREQTVYFAKVFKDDVGKAVEILSDILLHSKLDEAAIDRERDVILREMAEVNKQQEEL 175
[Close]
BLAST of mRNA_H-elongata_contig177641.4675.1 vs. uniprot
Match: A0A7S2UMC3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UMC3_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.400e-19
Identity = 48/72 (66.67%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 VRIERFGAWLCA---REQTVYYAKVFKEDLGRGLEILSDILIHSLLDEGAVHRERDVIIREMEEVNKQQEEV 207
            V IE  G  L A   REQTVY+AKVFK+D+GR +EILSDIL++S LD  A+ RERDVI+REM EVNKQQEE+
Sbjct:  106 VEIENMGGHLNAYTSREQTVYFAKVFKDDVGRAVEILSDILLNSKLDPSAIERERDVILREMAEVNKQQEEL 177
[Close]
BLAST of mRNA_H-elongata_contig177641.4675.1 vs. uniprot
Match: A0A024UPT7_9STRA (Uncharacterized protein (Fragment) n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UPT7_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 6.110e-19
Identity = 50/72 (69.44%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 VRIERFGAWLCA---REQTVYYAKVFKEDLGRGLEILSDILIHSLLDEGAVHRERDVIIREMEEVNKQQEEV 207
            V IE  G  L A   REQTVYYAKVFK+D+ + L+ILSDIL +S LDE A+ RERDVI+REMEEVNKQQEEV
Sbjct:  119 VEIENMGGHLNAYTSREQTVYYAKVFKKDVPQALDILSDILQNSKLDEAAIERERDVILREMEEVNKQQEEV 190
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177641.4675.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9H6_ECTSI1.140e-2584.29Mitochondrial Processing Peptidase beta subunit (C... [more]
A0A7S2N0R5_9STRA1.570e-2169.44Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S1DZP2_9STRA1.630e-2168.06Hypothetical protein (Fragment) n=2 Tax=Thalassion... [more]
A0A8J9S0U3_PHATR1.660e-2066.67Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
F0YAD5_AURAN2.350e-2070.83Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6S8R8K4_9STRA2.690e-2069.44Hypothetical protein n=2 Tax=Lithodesmiaceae TaxID... [more]
A0A1Z5J963_FISSO4.690e-2068.06Mitochondrial-processing peptidase subunit alpha n... [more]
B7G150_PHATC1.210e-1966.67Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2UMC3_9STRA1.400e-1966.67Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A024UPT7_9STRA6.110e-1969.44Uncharacterized protein (Fragment) n=10 Tax=Saprol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177641contigH-elongata_contig177641:639..851 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score94.0
Seed ortholog evalue3.1e-17
Seed eggNOG ortholog44056.XP_009037382.1
Preferred nameMAS1
KEGG koko:K17732
GOsGO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0005746,GO:0005750,GO:0005758,GO:0005759,GO:0005773,GO:0005774,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006508,GO:0006605,GO:0006626,GO:0006627,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0008270,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009507,GO:0009536,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016485,GO:0016787,GO:0017087,GO:0017144,GO:0019538,GO:0019637,GO:0019693,GO:0019866,GO:0019867,GO:0022900,GO:0022904,GO:0030312,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034982,GO:0042773,GO:0042775,GO:0042886,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045184,GO:0045275,GO:0045333,GO:0046034,GO:0046483,GO:0046872,GO:0046907,GO:0046914,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0055086,GO:0055114,GO:0070011,GO:0070013,GO:0070069,GO:0070469,GO:0070585,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072521,GO:0072594,GO:0072655,GO:0098588,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:0098805,GO:0140096,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.mitochondrial electron transport, ubiquinol to cytochrome c
EggNOG OGsCOG0612@1,KOG0960@2759
EC3.4.24.64
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03029
Hectar predicted targeting categoryother localisation
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930027.4872036-CDS-H-elongata_contig177641:638..8511622930027.4872036-CDS-H-elongata_contig177641:638..851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177641 639..851 -
1691679252.180203-CDS-H-elongata_contig177641:638..8511691679252.180203-CDS-H-elongata_contig177641:638..851Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177641 639..851 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177641.4675.1prot_H-elongata_contig177641.4675.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177641 639..851 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177641.4675.1

>prot_H-elongata_contig177641.4675.1 ID=prot_H-elongata_contig177641.4675.1|Name=mRNA_H-elongata_contig177641.4675.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=71bp
VRIERFGAWLCAREQTVYYAKVFKEDLGRGLEILSDILIHSLLDEGAVHR
ERDVIIREMEEVNKQQEEVR*
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mRNA from alignment at H-elongata_contig177641:639..851-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177641.4675.1 ID=mRNA_H-elongata_contig177641.4675.1|Name=mRNA_H-elongata_contig177641.4675.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=213bp|location=Sequence derived from alignment at H-elongata_contig177641:639..851- (Himanthalia elongata Himel1 dioecious)
GTTAGGATTGAACGTTTTGGTGCTTGGTTGTGCGCCAGAGAACAGACGGT
ATACTATGCGAAGGTTTTCAAGGAAGATCTGGGGCGGGGGCTGGAGATCC
TGAGCGACATCCTGATTCACAGCCTGCTGGACGAGGGGGCCGTGCACCGG
GAGAGGGACGTGATCATTAGGGAGATGGAAGAGGTTAATAAGCAACAAGA
AGAGGTGAGGTGA
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Coding sequence (CDS) from alignment at H-elongata_contig177641:639..851-

>mRNA_H-elongata_contig177641.4675.1 ID=mRNA_H-elongata_contig177641.4675.1|Name=mRNA_H-elongata_contig177641.4675.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=426bp|location=Sequence derived from alignment at H-elongata_contig177641:639..851- (Himanthalia elongata Himel1 dioecious)
GTTAGGATTGAACGTTTTGGTGCTTGGTTGTGCGCCAGAGAACAGACGGT
ATACTATGCGAAGGTTTTCAAGGAAGATCTGGGGCGGGGGCTGGAGATCC
TGAGCGACATCCTGATTCACAGCCTGCTGGACGAGGGGGCCGTGCACCGG
GAGAGGGACGTGATCATTAGGGAGATGGAAGAGGTTAATAAGCAACAAGA
AGAGGTGAGGTGAGTTAGGATTGAACGTTTTGGTGCTTGGTTGTGCGCCA
GAGAACAGACGGTATACTATGCGAAGGTTTTCAAGGAAGATCTGGGGCGG
GGGCTGGAGATCCTGAGCGACATCCTGATTCACAGCCTGCTGGACGAGGG
GGCCGTGCACCGGGAGAGGGACGTGATCATTAGGGAGATGGAAGAGGTTA
ATAAGCAACAAGAAGAGGTGAGGTGA
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