mRNA_H-elongata_contig177538.4670.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig177538.4670.1
Unique NamemRNA_H-elongata_contig177538.4670.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig177538.4670.1 vs. uniprot
Match: A0A6H5L9W6_9PHAE (Fe2OG dioxygenase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9W6_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 9.590e-57
Identity = 83/107 (77.57%), Postives = 94/107 (87.85%), Query Frame = 1 
Query:    1 QILLDGKWHDVPPRPGAFVCNLGDMLQRWRV-TNDHLRSTVHRVVNKLGRERYSIPFFFEPNFDTQVVCFPQFCSSDNPAKYSPVTSGMHLLEKYSQTHRDFDANQE 318
            Q+ L+G+W DVPPR GAF+CNLGDMLQRWRV TND LRSTVHRVVNKLGRERYSIPFFFE NFDT+VVC PQ CS +NPAKY PVT+G ++L KYSQTH+DFD NQ+
Sbjct:  211 QVRLNGEWLDVPPREGAFICNLGDMLQRWRVVTNDELRSTVHRVVNKLGRERYSIPFFFELNFDTEVVCLPQCCSEENPAKYPPVTAGSYILNKYSQTHQDFDGNQQ 317
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BLAST of mRNA_H-elongata_contig177538.4670.1 vs. uniprot
Match: D7FYW9_ECTSI (Fe2OG dioxygenase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYW9_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 1.790e-54
Identity = 79/105 (75.24%), Postives = 90/105 (85.71%), Query Frame = 1 
Query:    1 QILLDGKWHDVPPRPGAFVCNLGDMLQRWRVTNDHLRSTVHRVVNKLGRERYSIPFFFEPNFDTQVVCFPQFCSSDNPAKYSPVTSGMHLLEKYSQTHRDFDANQ 315
            Q+ L+GKW D+PPR GAF+CNLGDMLQRW  TND LRSTVHRVVNKLG ERYSIPFFFEPNFDT+V CFPQFCS +NPA+Y PV +G +L+ KYSQTH+DFD  Q
Sbjct:  213 QVRLNGKWLDIPPRKGAFICNLGDMLQRW--TNDDLRSTVHRVVNKLGLERYSIPFFFEPNFDTEVACFPQFCSEENPARYPPVKAGAYLMGKYSQTHQDFDGYQ 315
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BLAST of mRNA_H-elongata_contig177538.4670.1 vs. uniprot
Match: A0A8J9RD93_9CHLO (2-oxoglutarate-Fe(II) type oxidoreductase hxnY n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RD93_9CHLO)

HSP 1 Score: 143 bits (360), Expect = 1.580e-39
Identity = 62/103 (60.19%), Postives = 77/103 (74.76%), Query Frame = 1 
Query:    1 QILLDGKWHDVPPRPGAFVCNLGDMLQRWRVTNDHLRSTVHRVVNKLGRERYSIPFFFEPNFDTQVVCFPQFCSSDNPAKYSPVTSGMHLLEKYSQTHRDFDA 309
            QI   G++ D+PP+PGAF+ NLGDML+RW  TN   +ST+HRV+    R RYSIPFFFEP+FDT+V C P  CS DNP +Y P TSG HLL+KY+QTH  +DA
Sbjct:  211 QIWSGGRFVDIPPKPGAFIVNLGDMLERW--TNGLFKSTLHRVITDGSRHRYSIPFFFEPDFDTRVECLPCCCSPDNPPRYPPTTSGQHLLDKYAQTHSGYDA 311
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BLAST of mRNA_H-elongata_contig177538.4670.1 vs. uniprot
Match: I0Z511_COCSC (Oxygenase-like protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z511_COCSC)

HSP 1 Score: 142 bits (359), Expect = 1.630e-39
Identity = 63/98 (64.29%), Postives = 74/98 (75.51%), Query Frame = 1 
Query:   16 GKWHDVPPRPGAFVCNLGDMLQRWRVTNDHLRSTVHRVVNKLGRERYSIPFFFEPNFDTQVVCFPQFCSSDNPAKYSPVTSGMHLLEKYSQTHRDFDA 309
            G++ DVPP+PGAF+ NLGDML+RW  TN   +ST+HRVV    R RYSIPFFFEPNFDT+V C P  C  DNP +Y P TSG HLL+KY+QTH  FDA
Sbjct:  209 GRFVDVPPKPGAFIVNLGDMLERW--TNGLFKSTLHRVVTDGSRHRYSIPFFFEPNFDTRVECLPCCCGPDNPPRYPPTTSGQHLLDKYAQTHAGFDA 304
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BLAST of mRNA_H-elongata_contig177538.4670.1 vs. uniprot
Match: A0A5D6Y3Q7_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3Q7_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.170e-38
Identity = 65/105 (61.90%), Postives = 74/105 (70.48%), Query Frame = 1 
Query:    1 QILLDGKWHDVPPRPGAFVCNLGDMLQRWRVTNDHLRSTVHRVVNKLGRERYSIPFFFEPNFDTQVVCFPQFCSSDNPAKYSPVTSGMHLLEKYSQTHRDFDANQ 315
            QIL  G+W DVPPR  AF+ N+GDM +RW  TN   +ST HRVVN  GRERYS+PFF+EPNF   V CFP   S  NPAKY+P TSG HL+E Y QTH  FDA Q
Sbjct:  210 QILYRGEWLDVPPRADAFIVNIGDMGERW--TNGVFQSTRHRVVNATGRERYSVPFFYEPNFPCVVECFPSCVSERNPAKYAPTTSGEHLVEMYRQTHAAFDAPQ 312
[Close]
BLAST of mRNA_H-elongata_contig177538.4670.1 vs. uniprot
Match: A0A7R9YQ36_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9YQ36_9CHLO)

HSP 1 Score: 139 bits (351), Expect = 2.270e-38
Identity = 61/103 (59.22%), Postives = 70/103 (67.96%), Query Frame = 1 
Query:    1 QILLDGKWHDVPPRPGAFVCNLGDMLQRWRVTNDHLRSTVHRVVNKLGRERYSIPFFFEPNFDTQVVCFPQFCSSDNPAKYSPVTSGMHLLEKYSQTHRDFDA 309
            QI   G W DVPP PGAF+ NLGDML+RW  TN    ST+HRVVN  G+ERYSI FFFEPNF+  V C PQ C  D P KY P T+G HLL+KY+ TH  +  
Sbjct:  212 QIHTSGAWRDVPPMPGAFIINLGDMLERW--TNGMFHSTLHRVVNTTGQERYSIAFFFEPNFEAIVECLPQCCGPDRPPKYPPTTAGQHLLDKYAATHAGYSG 312
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BLAST of mRNA_H-elongata_contig177538.4670.1 vs. uniprot
Match: A0A6A3R2W1_9STRA (Fe2OG dioxygenase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3R2W1_9STRA)

HSP 1 Score: 139 bits (349), Expect = 4.620e-38
Identity = 62/106 (58.49%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:    1 QILLDGKWHDVPPRPGAFVCNLGDMLQRWRVTNDHLRSTVHRVVNKLGRERYSIPFFFEPNFDTQVVCFPQFCSSDNPAKYSPVTSGMHLLEKYSQTHRDFDANQE 318
            QI  +G+W DVPPR  AFV N+GDM +R+  TN   RST+HRVVN  G ERYS+PFF+EP+F  QV CFP   S++NPAKY P TSG HL++ Y QTH  F+A+ E
Sbjct:  209 QIRHEGQWVDVPPRADAFVVNIGDMAERF--TNGQFRSTLHRVVNTSGGERYSVPFFYEPHFTCQVECFPSCVSAENPAKYPPTTSGQHLVDMYKQTHASFEASDE 312
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BLAST of mRNA_H-elongata_contig177538.4670.1 vs. uniprot
Match: A0A6A3JHE1_9STRA (Fe2OG dioxygenase domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3JHE1_9STRA)

HSP 1 Score: 140 bits (354), Expect = 9.100e-38
Identity = 63/106 (59.43%), Postives = 77/106 (72.64%), Query Frame = 1 
Query:    1 QILLDGKWHDVPPRPGAFVCNLGDMLQRWRVTNDHLRSTVHRVVNKLGRERYSIPFFFEPNFDTQVVCFPQFCSSDNPAKYSPVTSGMHLLEKYSQTHRDFDANQE 318
            QI  +G+W DVPPR  AFV N+GDM +R+  TN   RST+HRVVN  G ERYS+PFF+EPNF  QV CFP   S++NPAKY P TSG HL++ Y QTH  F+A+ E
Sbjct:  333 QIRHEGQWVDVPPRADAFVVNIGDMAERF--TNGQFRSTLHRVVNTSGGERYSVPFFYEPNFTCQVECFPSCVSAENPAKYPPTTSGQHLVDMYKQTHASFEASDE 436
[Close]
BLAST of mRNA_H-elongata_contig177538.4670.1 vs. uniprot
Match: A0A662XBV8_9STRA (Fe2OG dioxygenase domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XBV8_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.420e-37
Identity = 60/103 (58.25%), Postives = 76/103 (73.79%), Query Frame = 1 
Query:    1 QILLDGKWHDVPPRPGAFVCNLGDMLQRWRVTNDHLRSTVHRVVNKLGRERYSIPFFFEPNFDTQVVCFPQFCSSDNPAKYSPVTSGMHLLEKYSQTHRDFDA 309
            QI  +G+W DVPPR  AFV N+GDM +R+  TN   +ST+HRVVN  G+ERYS+PFF+EPNF  QV CFP   S++NPAKY P +SG HL++ Y QTH  F+A
Sbjct:  209 QIFHEGQWVDVPPREDAFVVNIGDMAERF--TNGQFKSTLHRVVNGSGKERYSVPFFYEPNFTCQVECFPSCVSAENPAKYPPTSSGQHLVDMYKQTHAAFEA 309
[Close]
BLAST of mRNA_H-elongata_contig177538.4670.1 vs. uniprot
Match: G4YY76_PHYSP (Fe2OG dioxygenase domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YY76_PHYSP)

HSP 1 Score: 137 bits (346), Expect = 1.450e-37
Identity = 61/103 (59.22%), Postives = 75/103 (72.82%), Query Frame = 1 
Query:    1 QILLDGKWHDVPPRPGAFVCNLGDMLQRWRVTNDHLRSTVHRVVNKLGRERYSIPFFFEPNFDTQVVCFPQFCSSDNPAKYSPVTSGMHLLEKYSQTHRDFDA 309
            QI  +G+W DVPPR  AFV N+GDM +R+  TN   +ST+HRVVN  G+ERYS+PFF+EPNF   V CFP   S++NPAKY P TSG HL++ Y QTH  FDA
Sbjct:  209 QIRHEGQWVDVPPRAEAFVVNIGDMAERF--TNGRFKSTLHRVVNTSGQERYSVPFFYEPNFTCVVECFPSCVSAENPAKYPPTTSGQHLVDMYKQTHASFDA 309
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig177538.4670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9W6_9PHAE9.590e-5777.57Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
D7FYW9_ECTSI1.790e-5475.24Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A8J9RD93_9CHLO1.580e-3960.192-oxoglutarate-Fe(II) type oxidoreductase hxnY n=1... [more]
I0Z511_COCSC1.630e-3964.29Oxygenase-like protein n=1 Tax=Coccomyxa subellips... [more]
A0A5D6Y3Q7_9STRA2.170e-3861.90Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A7R9YQ36_9CHLO2.270e-3859.22Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A6A3R2W1_9STRA4.620e-3858.49Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A6A3JHE1_9STRA9.100e-3859.43Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
A0A662XBV8_9STRA1.420e-3758.25Fe2OG dioxygenase domain-containing protein n=2 Ta... [more]
G4YY76_PHYSP1.450e-3759.22Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig177538contigH-elongata_contig177538:145..1298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue7.7e-44
Seed eggNOG ortholog2880.D7FYW8
KEGG koko:K06901
KEGG TC2.A.1.40
GOsGO:0007275,GO:0008150,GO:0009653,GO:0009791,GO:0010015,GO:0010101,GO:0010102,GO:0010468,GO:0019222,GO:0022622,GO:0032501,GO:0032502,GO:0048364,GO:0048527,GO:0048528,GO:0048731,GO:0048856,GO:0050789,GO:0060255,GO:0065007,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:1905392
EggNOG free text desc.Belongs to the iron ascorbate-dependent oxidoreductase family
EggNOG OGsCOG3491@1,KOG0143@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Exons3
Model size327
Cds size327
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig177538.4670.1prot_H-elongata_contig177538.4670.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig177538 145..1298 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930026.960366-CDS-H-elongata_contig177538:144..2761622930026.960366-CDS-H-elongata_contig177538:144..276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177538 145..276 -
1691679251.931013-CDS-H-elongata_contig177538:144..2761691679251.931013-CDS-H-elongata_contig177538:144..276Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177538 145..276 -
1622930026.9768336-CDS-H-elongata_contig177538:837..9401622930026.9768336-CDS-H-elongata_contig177538:837..940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177538 838..940 -
1691679251.9408855-CDS-H-elongata_contig177538:837..9401691679251.9408855-CDS-H-elongata_contig177538:837..940Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177538 838..940 -
1622930026.9932675-CDS-H-elongata_contig177538:1206..12981622930026.9932675-CDS-H-elongata_contig177538:1206..1298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177538 1207..1298 -
1691679251.9484649-CDS-H-elongata_contig177538:1206..12981691679251.9484649-CDS-H-elongata_contig177538:1206..1298Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig177538 1207..1298 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig177538.4670.1

>prot_H-elongata_contig177538.4670.1 ID=prot_H-elongata_contig177538.4670.1|Name=mRNA_H-elongata_contig177538.4670.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=109bp
QILLDGKWHDVPPRPGAFVCNLGDMLQRWRVTNDHLRSTVHRVVNKLGRE
RYSIPFFFEPNFDTQVVCFPQFCSSDNPAKYSPVTSGMHLLEKYSQTHRD
FDANQEET*
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mRNA from alignment at H-elongata_contig177538:145..1298-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig177538.4670.1 ID=mRNA_H-elongata_contig177538.4670.1|Name=mRNA_H-elongata_contig177538.4670.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1154bp|location=Sequence derived from alignment at H-elongata_contig177538:145..1298- (Himanthalia elongata Himel1 dioecious)
CAAATTCTGCTAGACGGCAAGTGGCACGACGTGCCGCCGCGGCCAGGGGC
ATTCGTTTGTAACCTCGGCGACATGCTGCAACGATGGCGAGTGTTGATTT
CCCCCCCGAGCATTAACGTGCATTTCGCGTCCACTGTCCTTTGCTTCGAA
GCCCTTGGCATTAGGGTTATTCTGCCGTTGGGCAGACATCTACCGTGGGC
GATAACCAGATCATTATGGGTCCATTTCTCTCCGTCGAGACTTAACATGG
CCCAACTACATGCCGACCCGCATATTGCGCGAATGTTTCCGGGGGCTGAA
GCTGGATATGACCCATAATGATGAATGGGTAGTCAATCGCAAAATTGTAT
TATTGCAGGACAAACGATCACCTCCGATCCACGGTACACCGAGTGGTAAA
CAAGCTGGGCCGCGAACGGTACAGCATCCCCTTCTTCTTCGAGCCGAACT
TCGACACACAGGTGTGTACACCCAGCATCAAAGTGGTGCACCGGGCGCAT
TTTTCACTTGCAAACAAAAATTAAATACCCTGAGTTTTGGCTCGAGCTGT
TATATTCGGGTAACAAGGCTTTCGTGTTGAGCTTTATCAAGGATAAAACA
GCGAAGGAAATTCACCAGCAATTACCATGAACGTCCGCCCATGTGAAACA
GAGTGCGCTCATTGACAACGTGCGTTCGGCAGTGAAAAGCAGCAAGTGAC
GGAAAAGGAGACTCGACCCTTCGTACGTTTTTGCTCTCTAGACCGCACTT
TCTCCTTTTGCGCTTTAACATGGTGGAGCGCCGCGCCGCCTTGGGTATGT
TCTAATATGTTGCTACATGCAATGATAATGCTTTGGACCCCGTTATGTTT
TCGTTGAAAAGCCATCGCTCCAATGCTTCCCGGTACCCTTTTGAATCCTA
TCGATGTATAACATTTCCCCCGCCCTATCAAAATGGCGTCAACAATAACC
CTGCTGACTCACCTCATCAGAGTTCACGTCGCATTAGATTTGGCATTTTT
TGTTGTTGTGGCGCATCCGCAGGTGGTATGCTTTCCACAGTTCTGCTCAA
GTGACAACCCTGCTAAGTACTCGCCGGTGACGAGTGGAATGCACCTCCTT
GAGAAATACTCGCAGACGCATCGAGACTTTGATGCCAACCAAGAAGAGAC
TTAG
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Coding sequence (CDS) from alignment at H-elongata_contig177538:145..1298-

>mRNA_H-elongata_contig177538.4670.1 ID=mRNA_H-elongata_contig177538.4670.1|Name=mRNA_H-elongata_contig177538.4670.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=654bp|location=Sequence derived from alignment at H-elongata_contig177538:145..1298- (Himanthalia elongata Himel1 dioecious)
CAAATTCTGCTAGACGGCAAGTGGCACGACGTGCCGCCGCGGCCAGGGGC
ATTCGTTTGTAACCTCGGCGACATGCTGCAACGATGGCGAGTCAAATTCT
GCTAGACGGCAAGTGGCACGACGTGCCGCCGCGGCCAGGGGCATTCGTTT
GTAACCTCGGCGACATGCTGCAACGATGGCGAGTGACAAACGATCACCTC
CGATCCACGGTACACCGAGTGGTAAACAAGCTGGGCCGCGAACGGTACAG
CATCCCCTTCTTCTTCGAGCCGAACTTCGACACACAGGACAAACGATCAC
CTCCGATCCACGGTACACCGAGTGGTAAACAAGCTGGGCCGCGAACGGTA
CAGCATCCCCTTCTTCTTCGAGCCGAACTTCGACACACAGGTGGTATGCT
TTCCACAGTTCTGCTCAAGTGACAACCCTGCTAAGTACTCGCCGGTGACG
AGTGGAATGCACCTCCTTGAGAAATACTCGCAGACGCATCGAGACTTTGA
TGCCAACCAAGAAGAGACTTAGGTGGTATGCTTTCCACAGTTCTGCTCAA
GTGACAACCCTGCTAAGTACTCGCCGGTGACGAGTGGAATGCACCTCCTT
GAGAAATACTCGCAGACGCATCGAGACTTTGATGCCAACCAAGAAGAGAC
TTAG
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