mRNA_H-elongata_contig17736.4662.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig17736.4662.1
Unique NamemRNA_H-elongata_contig17736.4662.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: D7G7A9_ECTSI (Cation efflux protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A9_ECTSI)

HSP 1 Score: 368 bits (945), Expect = 9.670e-122
Identity = 198/260 (76.15%), Postives = 220/260 (84.62%), Query Frame = 1
Query:    1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIGNHVLDTLGEVVQGTERGSTLPRNTAVVAVVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTDATEYKVQHRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNIALE 780
            A+I DAGH LS+LLSDAVTLWAVRLSRLPPD+DHPYG GRFEAVGAFI+ +MLM A YGIGNH  +TL EV+   E  +   R TAV A VSI+AKEALFRAT A+G+RRNSQVLIANAWHH+TDAVSSVVALLAI GSM GA MLDPIAGLMVAGMV+LTGVQ     VSTDAMAQLTDA +Y V+ +VAE+AT+VPGVLSFDRVRARRMGPQTLVDLTIQTD M SASAAQQ   R++WEIL  +P VADVMVNIA+E
Sbjct:  247 AMIADAGHSLSDLLSDAVTLWAVRLSRLPPDEDHPYGHGRFEAVGAFIIALMLMGAGYGIGNHSFETLREVISRGEHAAIPTRLTAVAASVSIIAKEALFRATNAIGKRRNSQVLIANAWHHRTDAVSSVVALLAIAGSMSGAPMLDPIAGLMVAGMVALTGVQ-----VSTDAMAQLTDAADYDVRRKVAEIATQVPGVLSFDRVRARRMGPQTLVDLTIQTDDMISASAAQQIGQRVRWEILGELPFVADVMVNIAVE 501          
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: A0A7S4DFL3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DFL3_HETAK)

HSP 1 Score: 248 bits (634), Expect = 4.680e-76
Identity = 137/274 (50.00%), Postives = 182/274 (66.42%), Query Frame = 1
Query:    1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIGNHVLDTL---------------GEVVQGTERGSTLPRNTAVVA-VVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTDATEYKVQHRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNIA 774
            A++ DAGH LS+L+SD VTL++VRL+RLPPD+DHPYG GRFEAVGAFI+ +ML+ A YG+GNH  ++                G +  G       P   A+VA V+SIV+KE L+R T  VG R NSQVLIANAWHH++DA+SSV+A + I G+M G  +LD +AGLMVAGM+SLTG+Q     +  +++ QLTD  E      +     KV GVL FD +RARRMG Q LVD+ IQ D   SA+AA Q   R +W +L+ +P V+DV+V ++
Sbjct:  144 AMVADAGHSLSDLISDGVTLYSVRLARLPPDEDHPYGHGRFEAVGAFIIAMMLIAASYGLGNHSYESFLKAIGYMKIPALGIGGNLDGGVPTSELQPTKIALVAAVISIVSKELLYRVTAKVGERLNSQVLIANAWHHRSDALSSVIAFVGIGGAMMGVPVLDSLAGLMVAGMLSLTGLQ-----LGWESVKQLTDTAENDCIDEIGAAVGKVEGVLGFDNLRARRMGSQMLVDVRIQCDPYISATAAHQIAERTRWHVLKIVPQVSDVLVTVS 412          
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: A0A7S2RL19_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL19_9STRA)

HSP 1 Score: 246 bits (628), Expect = 6.530e-76
Identity = 136/264 (51.52%), Postives = 178/264 (67.42%), Query Frame = 1
Query:    1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIGNHVLDTLGEVVQGTERGSTLPRNTAVV-----AVVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTDATEYKVQHRVAEMATKVPGVLSFDR--VRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNI 771
            A+I DAGH LS+LLSD VTLWAVRLSRLPPD DHPYG GRFEA+GA  +  +L    +G G H   +L E  + +  G  L  +T  +     AVVSI++KE L+RAT  VG+R NSQVLIANAWHH++DA SSVVAL+ IVG++ G  +LDP+AGL VAGMV++TG+Q     V  D++ QLTD  + +   R +E+A    GV+S D+  VRARRMG   LVDL +Q      AS A Q    ++W ILE +P V++V+V++
Sbjct:   35 AMIADAGHSLSDLLSDGVTLWAVRLSRLPPDSDHPYGHGRFEALGALAIAALLASTAFGFGGHAYHSLTEFSRASAAGMDLATSTPTLLAVAAAVVSILSKEVLYRATAVVGQRLNSQVLIANAWHHRSDAFSSVVALVGIVGALLGQPILDPLAGLCVAGMVAITGLQ-----VGWDSLTQLTDTVDDEAVKRASEIAMNCDGVVSVDQKNVRARRMGSDILVDLRVQISPHVPASGANQIAEAVRWRILESMPAVSEVLVHV 293          
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: A0A7S2RMB7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMB7_9STRA)

HSP 1 Score: 246 bits (628), Expect = 3.230e-74
Identity = 136/264 (51.52%), Postives = 178/264 (67.42%), Query Frame = 1
Query:    1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIGNHVLDTLGEVVQGTERGSTLPRNTAVV-----AVVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTDATEYKVQHRVAEMATKVPGVLSFDR--VRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNI 771
            A+I DAGH LS+LLSD VTLWAVRLSRLPPD DHPYG GRFEA+GA  +  +L    +G G H   +L E  + +  G  L  +T  +     AVVSI++KE L+RAT  VG+R NSQVLIANAWHH++DA SSVVAL+ IVG++ G  +LDP+AGL VAGMV++TG+Q     V  D++ QLTD  + +   R +E+A    GV+S D+  VRARRMG   LVDL +Q      AS A Q    ++W ILE +P V++V+V++
Sbjct:  196 AMIADAGHSLSDLLSDGVTLWAVRLSRLPPDSDHPYGHGRFEALGALAIAALLASTAFGFGGHAYHSLTEFSRASAAGMDLATSTPTLLAVAAAVVSILSKEVLYRATAVVGQRLNSQVLIANAWHHRSDAFSSVVALVGIVGALLGQPILDPLAGLCVAGMVAITGLQ-----VGWDSLTQLTDTVDDEAVKRASEIAMNCDGVVSVDQKNVRARRMGSDILVDLRVQISPHVPASGANQIAEAVRWRILESMPAVSEVLVHV 454          
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: A0A024TH39_9STRA (ZT_dimer domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TH39_9STRA)

HSP 1 Score: 225 bits (573), Expect = 2.960e-67
Identity = 135/273 (49.45%), Postives = 178/273 (65.20%), Query Frame = 1
Query:    1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIG--------NHVLDTLGEVVQGTERG--STLPRNT-----AVVAVVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTD-ATEYKVQHRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNI 771
            A++ DA H LS+LLSD VTLWAVR+SRLPPDD+HPYG G+FEAVG+  V  +L  A  G+G          +LD    V    +    +TL R T     A  AV SI AKEAL+ AT+ VG + NS+VLIANAWHH+TDA+SSVVAL  I+GSM    + DPIAG +V+GM++ TGV      +  D++ +LTD + E +V   +   ++ V  V+S   VRARRMGP TLVDL +   G TS SAAQQ   R+K E+L+R+P V++V+V+I
Sbjct:   84 ALVADAVHSLSDLLSDVVTLWAVRISRLPPDDEHPYGYGKFEAVGSLTVGAILTAAGVGMGYDALHLLQTGLLDAAVTVPSSLDFSFLTTLDRTTQWSIAAGAAVASIGAKEALYHATVRVGNQTNSKVLIANAWHHRTDAISSVVALGGILGSMANVPLFDPIAGAIVSGMIAKTGVD-----ICLDSVRELTDKSVENEVLDLLRHSSSSVEDVVSVSNVRARRMGPYTLVDLRVNVHGRTSVSAAQQVAARVKAEVLKRVPDVSEVLVHI 351          
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: A0A7S2V756_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V756_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.260e-65
Identity = 132/301 (43.85%), Postives = 182/301 (60.47%), Query Frame = 1
Query:    1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIGNH------------------------VLDTLGEV------VQGT-------------ERGSTLPRNTAVVA-VVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTDATEYKVQHRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNI 771
            A+I DAGH LS+L+SD VTLWAVR++RLP D DHPYG GRFEAVGAF+++VMLM A Y +GNH                        +L  +G +      V G+             E  + +P   A+VA +VSIV+KE L+R T  VG++ NSQVLIANAWHH++DA+SS VA+  IVG+  G  +LDP+AGLMV+ M++LTG+Q        D++  LTD  +  +  ++  +  +V GV    ++RAR MG  TLVD+ I T    SASAA Q   R +W +L  +P+V+DV+V +
Sbjct:   38 AMIADAGHSLSDLVSDGVTLWAVRVARLPADADHPYGHGRFEAVGAFVISVMLMSAGYSLGNHAYESFLRALPYSGIPTSLAGWKVGLLSMMGHMGAASASVTGSAXXXXXXXXXXXVEGFAGMPGKIALVAALVSIVSKELLYRVTARVGKKLNSQVLIANAWHHRSDALSSFVAVGGIVGATMGLPVLDPLAGLMVSAMLTLTGLQC-----GWDSVKALTDTADTAMVSKLGALLDQVEGVQGHSQLRARSMGSDTLVDVKIHTHPRISASAAHQVAERARWHLLRNVPMVSDVLVTL 333          
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: W4GR85_9STRA (ZT_dimer domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GR85_9STRA)

HSP 1 Score: 220 bits (561), Expect = 2.560e-65
Identity = 134/277 (48.38%), Postives = 178/277 (64.26%), Query Frame = 1
Query:    1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIGN---HVLDT-LGEVVQGTERG----------STLPRNT-----AVVAVVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTD-ATEYKVQHRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNI 771
            A++ DA H LS+LLSD VTLWAVR+SRLPPDD+HPYG G+FEAVG+  V  +L  A  G+G    H+L T   +    T             ++L R T     A  A+VSI AKEAL+ AT+ +G + NS+VLIANAWHH+TDA+SSVVAL  IVGSM    + DPIAG +V+ M++ TGV      +  D++ +LTD + E +V   +   ++ V  V+S   VRARRMGP TLVDL +   G TS SAAQQ   R+K E+L R+P V++V+V+I
Sbjct:   89 ALVADAAHSLSDLLSDIVTLWAVRISRLPPDDEHPYGYGKFEAVGSLTVGAILTAAGVGMGYDAFHILQTGFFDAATATTVAVPSFLDLSFLTSLDRTTQWGIAAGAAIVSIGAKEALYHATVRIGNQTNSKVLIANAWHHRTDAISSVVALGGIVGSMANIPLFDPIAGAVVSCMIAKTGVD-----ICLDSVRELTDKSVEDEVLDLLRHSSSSVEDVVSVSNVRARRMGPYTLVDLRVNVHGRTSVSAAQQLAARVKAEVLRRVPDVSEVLVHI 360          
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: A0A3D5HED6_9DELT (Cation transporter n=5 Tax=root TaxID=1 RepID=A0A3D5HED6_9DELT)

HSP 1 Score: 215 bits (547), Expect = 1.780e-64
Identity = 118/262 (45.04%), Postives = 172/262 (65.65%), Query Frame = 1
Query:    1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIGNHVLDTLGEVVQGTERGSTLPRNTAV-VAVVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTDAT-EYKVQHRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNIALE 780
            A+I DAGH +S+LLSD +TLWAVR+S +P D +HPYG G+FE VG FI+ ++L+    G+  HV + +   V        +P   A+ +A ++I+ KEALF  T  VGRR  S+VL+ANAWHH++DA+SSV ALL I G+  G  ++DPIAG++VAG++  TG+      +  +++ +LTD T E  V   + ++ + + GV  +  +RARRMGP  LVDL IQ D M S SAA Q   R++ EILE++P V +V+V++  E
Sbjct:   40 ALIADAGHSVSDLLSDGITLWAVRMSGIPKDKNHPYGHGKFETVGTFIIALLLLFTGIGVAGHVFNRMDAPV--------VPGTIALWMAGIAIIVKEALFHVTRMVGRRTGSRVLMANAWHHRSDAISSVAALLGIAGAQLGIPLMDPIAGMLVAGLIIKTGID-----IGYESIRELTDETVEEDVISELGKIMSGIEGVDHYHEMRARRMGPHLLVDLHIQVDSMMSISAAHQVAERVRLEILEKLPAVNEVLVHVDAE 288          
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: A0A329SCH1_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SCH1_9STRA)

HSP 1 Score: 216 bits (549), Expect = 1.120e-63
Identity = 129/273 (47.25%), Postives = 175/273 (64.10%), Query Frame = 1
Query:    1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIGNHVLDTLGEVVQGTERGS----TLP------RNT-----AVVAVVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTDAT-EYKVQHRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNI 771
            A+I DA H LS+LLSD VTLW+V+++RLPPD  HPYG G++EAVG+  V  +L+    GIG      + E+  G    S     LP      R+T     A  A +SI AKEALF AT+ +G++ NS+VLIANAWHH+TDA+SSVVAL  I+GSM G  +LDP+AG+ VA M+  TG +     +  D++ +LTD T E +V   + E++  V  VL   +VRARRMGP TLVDL +  D  TS S AQQ   R++  IL+ +P V++V+V+I
Sbjct:  112 ALIADAAHSLSDLLSDVVTLWSVKVARLPPDPKHPYGYGKYEAVGSLSVGAILVLCGLGIGADGFQAMQEIWNGAAATSLPELNLPFLSEIDRSTQLALAAGAAGISIAAKEALFNATVKIGKQANSKVLIANAWHHRTDAISSVVALGGIIGSMAGMPLLDPVAGMAVAAMIMKTGGE-----ICLDSVQELTDNTVEAEVLETLKEVSASVDDVLHVSQVRARRMGPYTLVDLRVHLDARTSISMAQQISERVRSYILQEVPDVSEVLVHI 379          
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Match: A0A833T1I5_PHYIN (Dimerization domain of Zinc Transporter n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833T1I5_PHYIN)

HSP 1 Score: 215 bits (547), Expect = 2.070e-63
Identity = 131/273 (47.99%), Postives = 173/273 (63.37%), Query Frame = 1
Query:    1 AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVTVMLMRAEYGIGNHVLDTLGEVVQGTERGS----TLP------RNT-----AVVAVVSIVAKEALFRATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIAGLMVAGMVSLTGVQARLPRVSTDAMAQLTDAT-EYKVQHRVAEMATKVPGVLSFDRVRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIVADVMVNI 771
            A+I DA H LS+LLSD VTLW+V+++RLPPD  HPYG G++EAVG+  V  +L+    GIG      + E+  GT   S    TLP      R+T     A  A VSI AKEALF AT+ +G++ NS+VLIANAWHH+TDA+SSVVAL  I+GSM G  +LDP+AG+ VA M+  TG       +  D++ +LTD T E +V   + E++  V  VL   +VRARRMGP TLVDL +     TS S AQQ   R++  IL  +P V +V+V+I
Sbjct:  108 ALIADAAHSLSDLLSDVVTLWSVKVARLPPDPMHPYGYGKYEAVGSLSVGAILVLCGLGIGADGFQAIQEIWNGTGASSLPEFTLPFLSDIDRSTQWALAAGAAGVSIAAKEALFHATVKIGKQANSKVLIANAWHHRTDAISSVVALGGIIGSMAGVPLLDPVAGMAVAAMIVKTGGD-----ICLDSVQELTDNTVEAEVLETLKEVSAGVDDVLHVSQVRARRMGPYTLVDLRVHLHARTSISMAQQISERVRSHILHEVPDVTEVLVHI 375          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig17736.4662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7A9_ECTSI9.670e-12276.15Cation efflux protein n=2 Tax=Ectocarpus siliculos... [more]
A0A7S4DFL3_HETAK4.680e-7650.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2RL19_9STRA6.530e-7651.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2RMB7_9STRA3.230e-7451.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A024TH39_9STRA2.960e-6749.45ZT_dimer domain-containing protein n=1 Tax=Aphanom... [more]
A0A7S2V756_9STRA1.260e-6543.85Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W4GR85_9STRA2.560e-6548.38ZT_dimer domain-containing protein n=1 Tax=Aphanom... [more]
A0A3D5HED6_9DELT1.780e-6445.04Cation transporter n=5 Tax=root TaxID=1 RepID=A0A3... [more]
A0A329SCH1_9STRA1.120e-6347.25Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A833T1I5_PHYIN2.070e-6347.99Dimerization domain of Zinc Transporter n=1 Tax=Ph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig17736contigH-elongata_contig17736:5076..7019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score367.1
Seed ortholog evalue6.9e-99
Seed eggNOG ortholog2880.D7G7A9
EggNOG free text desc.cation transmembrane transporter activity
EggNOG OGsCOG0053@1,KOG1485@2759
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size780
Cds size780
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig17736.4662.1prot_H-elongata_contig17736.4662.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig17736 5076..7019 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930026.1100807-CDS-H-elongata_contig17736:5075..51941622930026.1100807-CDS-H-elongata_contig17736:5075..5194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17736 5076..5194 +
1691679251.622986-CDS-H-elongata_contig17736:5075..51941691679251.622986-CDS-H-elongata_contig17736:5075..5194Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17736 5076..5194 +
1622930026.1273978-CDS-H-elongata_contig17736:5422..56061622930026.1273978-CDS-H-elongata_contig17736:5422..5606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17736 5423..5606 +
1691679251.633479-CDS-H-elongata_contig17736:5422..56061691679251.633479-CDS-H-elongata_contig17736:5422..5606Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17736 5423..5606 +
1622930026.1455693-CDS-H-elongata_contig17736:5828..60321622930026.1455693-CDS-H-elongata_contig17736:5828..6032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17736 5829..6032 +
1691679251.643053-CDS-H-elongata_contig17736:5828..60321691679251.643053-CDS-H-elongata_contig17736:5828..6032Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17736 5829..6032 +
1622930026.1717765-CDS-H-elongata_contig17736:6562..67661622930026.1717765-CDS-H-elongata_contig17736:6562..6766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17736 6563..6766 +
1691679251.6518438-CDS-H-elongata_contig17736:6562..67661691679251.6518438-CDS-H-elongata_contig17736:6562..6766Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17736 6563..6766 +
1622930026.1945605-CDS-H-elongata_contig17736:6950..70191622930026.1945605-CDS-H-elongata_contig17736:6950..7019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17736 6951..7019 +
1691679251.660486-CDS-H-elongata_contig17736:6950..70191691679251.660486-CDS-H-elongata_contig17736:6950..7019Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig17736 6951..7019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig17736.4662.1

>prot_H-elongata_contig17736.4662.1 ID=prot_H-elongata_contig17736.4662.1|Name=mRNA_H-elongata_contig17736.4662.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp
AIITDAGHQLSNLLSDAVTLWAVRLSRLPPDDDHPYGRGRFEAVGAFIVT
VMLMRAEYGIGNHVLDTLGEVVQGTERGSTLPRNTAVVAVVSIVAKEALF
RATIAVGRRRNSQVLIANAWHHQTDAVSSVVALLAIVGSMCGASMLDPIA
GLMVAGMVSLTGVQARLPRVSTDAMAQLTDATEYKVQHRVAEMATKVPGV
LSFDRVRARRMGPQTLVDLTIQTDGMTSASAAQQTRMRMKWEILERIPIV
ADVMVNIALE
back to top

mRNA from alignment at H-elongata_contig17736:5076..7019+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig17736.4662.1 ID=mRNA_H-elongata_contig17736.4662.1|Name=mRNA_H-elongata_contig17736.4662.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1944bp|location=Sequence derived from alignment at H-elongata_contig17736:5076..7019+ (Himanthalia elongata Himel1 dioecious)
GCGATAATCACCGACGCAGGTCACCAGCTGTCGAACCTTCTCTCAGACGC CGTCACGCTCTGGGCCGTGCGCCTGAGTCGATTACCTCCGGACGACGACC ATCCCTACGGACGTGGAAGGTGAATCTTAAACGCTACGTATTCCCGTTTC CACCACTGACGGATGATCACGATGGAGTCATAACAAAAACGGATGATGAC ACTGGAGTCAAAATAAAAACGGATTATGACGTTCTAAAAGGGGTATGCGG TCATTTAAGCCAAAGTGTTGTATTGAGTAGGAGATTGAGAAGAGATTCAA GGATCGGCGTTAGTTCGTTCATTTACTCTTGTGTTGTATTACGACAGATT CGAGGCGGTGGGGGCCTTCATCGTGACGGTGATGCTCATGCGGGCGGAGT ACGGCATCGGCAACCACGTGCTTGACACACTGGGGGAAGTGGTACAGGGA ACCGAGCGCGGCAGTACGCTCCCTCGTAATACGGCTGTGGTGGCCGTGGT CAGTATCGTAGCCAAGGAGGCGTTATTTCGGGTGAGCGACCGCTCAGCAC CCGCAGTGAAAAGCGTGAAGATGTGGGGAGGGGCTGTGGGTTGGGCAGAG TTTTCACCCCTGCAGAATGGCGGCTTTTCACATTCATGGAGTATTTTTTA GGCCCAACCAACTTGGAGAAACACACCTCAACATAATCCAGATTAGTATC TAAAACTAATAAAGCTATAGACGAGTGAACGGACGGTGCCTTTTGTTCTG CAGGCAACCATCGCCGTGGGCAGGCGGCGCAACTCGCAAGTCCTGATCGC AAACGCGTGGCACCACCAGACTGATGCCGTATCTTCCGTCGTGGCTCTCT TGGCTATCGTGGGCTCCATGTGCGGCGCATCGATGCTCGACCCGATCGCG GGACTGATGGTCGCGGGCATGGTGTCCTTGACTGGGGTGCAGGCGAGACT TCCTCGTGTATAGCATAATCAGCAGGAGGGAAAGCGTACTAAAGTTTTAC GTTCCTTTCTTTGTTATTGACCTGTTATTCATCTGTTATTGACATTTTAT TGACCATGCGTCCTCGGGAGGGACGGGACGGGGGAAATGGGGGTTAGACA GGAAACACAAAGGGCAGTCTTTTTTATTCACCTGGTGTATTTTCCTTAAA CAAAAAACATATAAACTATAACCTCCGAACATTTGTTCCTACGATGTGTT TCTTCATCCTGTTGACAAAAATCGATGGAATCACTTGTTATTAATCAAGT GAAATGGACTAGGGTGGAGGGAAGCGAAGGGCTTGATTATTAGTCTACAT CACTATATGAACAAAAGAGAAGCAATTATTACTATCATTCTGATGTTGAT GGTGGCGGTGGTACACGTACGTCGCTATAGACTATGCCGAAAATTCGTTA GCCCTGACTCCCCCAACCTCCAACCCCCGTTAGTCTTGACCTCTGAGCTC TTCTTTCCGGAAAATGCCGTTCGCTTCCCACCTTCAGGTGTCCACCGACG CGATGGCACAGCTGACGGACGCGACTGAATACAAAGTCCAACACAGAGTG GCCGAGATGGCAACCAAGGTCCCTGGAGTGCTGTCGTTCGATCGCGTCCG CGCGCGGAGGATGGGGCCTCAGACTCTCGTGGACCTGACCATCCAGACAG ACGGCATGACCTCAGCATCTGCAGCGCAGCAGACACGCATGGTTATATCT TGTATCTTGTATTTTGTGGGGTACGAGCATTTGTAACTCATTCTGGTTGG ATAAACGAATCATTTTACCAAAAGAAAAAAGAAAACAAATGGGGGGGAGG TTTGCGATCGATATCTCAAGGGTTAACAGAGTACTATACTGCTAATGATG TTATGATGTAATGCAGGTGGCTCAGCGTATGAAGTGGGAAATCTTGGAAA GGATACCCATCGTTGCGGACGTGATGGTAAACATCGCGTTGGAG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig17736:5076..7019+

>mRNA_H-elongata_contig17736.4662.1 ID=mRNA_H-elongata_contig17736.4662.1|Name=mRNA_H-elongata_contig17736.4662.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at H-elongata_contig17736:5076..7019+ (Himanthalia elongata Himel1 dioecious)
GCGATAATCACCGACGCAGGTCACCAGCTGTCGAACCTTCTCTCAGACGC
CGTCACGCTCTGGGCCGTGCGCCTGAGTCGATTACCTCCGGACGACGACC
ATCCCTACGGACGTGGAAGGCGATAATCACCGACGCAGGTCACCAGCTGT
CGAACCTTCTCTCAGACGCCGTCACGCTCTGGGCCGTGCGCCTGAGTCGA
TTACCTCCGGACGACGACCATCCCTACGGACGTGGAAGATTCGAGGCGGT
GGGGGCCTTCATCGTGACGGTGATGCTCATGCGGGCGGAGTACGGCATCG
GCAACCACGTGCTTGACACACTGGGGGAAGTGGTACAGGGAACCGAGCGC
GGCAGTACGCTCCCTCGTAATACGGCTGTGGTGGCCGTGGTCAGTATCGT
AGCCAAGGAGGCGTTATTTCGGATTCGAGGCGGTGGGGGCCTTCATCGTG
ACGGTGATGCTCATGCGGGCGGAGTACGGCATCGGCAACCACGTGCTTGA
CACACTGGGGGAAGTGGTACAGGGAACCGAGCGCGGCAGTACGCTCCCTC
GTAATACGGCTGTGGTGGCCGTGGTCAGTATCGTAGCCAAGGAGGCGTTA
TTTCGGGCAACCATCGCCGTGGGCAGGCGGCGCAACTCGCAAGTCCTGAT
CGCAAACGCGTGGCACCACCAGACTGATGCCGTATCTTCCGTCGTGGCTC
TCTTGGCTATCGTGGGCTCCATGTGCGGCGCATCGATGCTCGACCCGATC
GCGGGACTGATGGTCGCGGGCATGGTGTCCTTGACTGGGGTGCAGGCGAG
ACTTCCTCGTGCAACCATCGCCGTGGGCAGGCGGCGCAACTCGCAAGTCC
TGATCGCAAACGCGTGGCACCACCAGACTGATGCCGTATCTTCCGTCGTG
GCTCTCTTGGCTATCGTGGGCTCCATGTGCGGCGCATCGATGCTCGACCC
GATCGCGGGACTGATGGTCGCGGGCATGGTGTCCTTGACTGGGGTGCAGG
CGAGACTTCCTCGTGTGTCCACCGACGCGATGGCACAGCTGACGGACGCG
ACTGAATACAAAGTCCAACACAGAGTGGCCGAGATGGCAACCAAGGTCCC
TGGAGTGCTGTCGTTCGATCGCGTCCGCGCGCGGAGGATGGGGCCTCAGA
CTCTCGTGGACCTGACCATCCAGACAGACGGCATGACCTCAGCATCTGCA
GCGCAGCAGACACGCATGGTGTCCACCGACGCGATGGCACAGCTGACGGA
CGCGACTGAATACAAAGTCCAACACAGAGTGGCCGAGATGGCAACCAAGG
TCCCTGGAGTGCTGTCGTTCGATCGCGTCCGCGCGCGGAGGATGGGGCCT
CAGACTCTCGTGGACCTGACCATCCAGACAGACGGCATGACCTCAGCATC
TGCAGCGCAGCAGACACGCATGCGTATGAAGTGGGAAATCTTGGAAAGGA
TACCCATCGTTGCGGACGTGATGGTAAACATCGCGTTGGAGCGTATGAAG
TGGGAAATCTTGGAAAGGATACCCATCGTTGCGGACGTGATGGTAAACAT
CGCGTTGGAG
back to top